SitesBLAST
Comparing WP_043765527.1 NCBI__GCF_000733765.1:WP_043765527.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
41% identity, 69% coverage: 1:213/309 of query aligns to 1:215/285 of 4yerA
- binding adenosine-5'-diphosphate: F14 (≠ Y14), F17 (= F18), N39 (= N40), G40 (= G41), G42 (= G43), K43 (= K44), T44 (= T45), T45 (= T46), T135 (= T134), F136 (≠ L135), S137 (= S136)
7e7oA Cryo-em structure of human abca4 in nrpe-bound state (see paper)
34% identity, 98% coverage: 5:306/309 of query aligns to 823:1118/2003 of 7e7oA
Sites not aligning to the query:
- binding [(2S)-3-[2-[(E)-[(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraenylidene]amino]ethoxy-oxidanyl-phosphoryl]oxy-2-[(Z)-octadec-9-enoyl]oxy-propyl] (Z)-octadec-9-enoate: 285, 290, 526, 527, 589, 592, 1454
7lkpA Structure of atp-free human abca4 (see paper)
32% identity, 99% coverage: 1:306/309 of query aligns to 743:1044/1941 of 7lkpA
Sites not aligning to the query:
- binding Digitonin: 522, 526, 530, 533, 616
- binding cholesterol: 9, 10, 13, 617, 1073, 1074, 1076, 1402, 1436, 1487, 1492, 1495, 1496, 1499, 1603
7e7qA Cryo-em structure of human abca4 in atp-bound state (see paper)
33% identity, 97% coverage: 5:303/309 of query aligns to 792:1090/1958 of 7e7qA
- binding adenosine-5'-triphosphate: F801 (≠ Y14), C804 (vs. gap), A808 (= A20), N828 (= N40), G831 (= G43), K832 (= K44), T833 (= T45), T834 (= T46), Q873 (= Q85), S926 (= S136), G928 (= G138)
- binding magnesium ion: T833 (= T45), Q873 (= Q85)
Sites not aligning to the query:
8f5bA Human abca4 structure in complex with amp-pnp
33% identity, 97% coverage: 5:303/309 of query aligns to 721:1028/1924 of 8f5bA
Sites not aligning to the query:
5x40A Structure of a cbio dimer bound with amppcp (see paper)
40% identity, 69% coverage: 1:213/309 of query aligns to 1:219/280 of 5x40A
- binding phosphomethylphosphonic acid adenylate ester: F14 (≠ Y14), V18 (≠ F18), A20 (= A20), N40 (= N40), G41 (= G41), G43 (= G43), K44 (= K44), S45 (≠ T45), T46 (= T46), Q88 (= Q85), H139 (≠ M133), M140 (≠ T134), L141 (= L135), S142 (= S136), G144 (= G138), Q145 (≠ M139), Q166 (≠ E160), H198 (= H192)
- binding magnesium ion: S45 (≠ T45), Q88 (= Q85)
7m1qA Human abca4 structure in complex with n-ret-pe (see paper)
33% identity, 91% coverage: 24:303/309 of query aligns to 825:1099/1911 of 7m1qA
Sites not aligning to the query:
- binding [(2S)-3-[2-[(E)-[(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraenylidene]amino]ethoxy-oxidanyl-phosphoryl]oxy-2-[(Z)-octadec-9-enoyl]oxy-propyl] (Z)-octadec-9-enoate: 291, 296, 538, 539, 600, 604, 1157, 1310, 1437, 1575
- binding magnesium ion: 287, 289
7lkzA Structure of atp-bound human abca4 (see paper)
33% identity, 97% coverage: 5:303/309 of query aligns to 709:1022/1920 of 7lkzA
- binding adenosine-5'-triphosphate: F718 (≠ Y14), A725 (= A20), N745 (= N40), G746 (= G41), G748 (= G43), K749 (= K44), T750 (= T45), K834 (= K127), D841 (≠ T134), S843 (= S136)
- binding magnesium ion: T750 (= T45), Q790 (= Q85)
Sites not aligning to the query:
- binding [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate: 22, 465, 566, 567, 568, 572, 592, 593, 595, 1076, 1355, 1362, 1470, 1471
- binding adenosine-5'-triphosphate: 1619, 1646, 1647, 1649, 1650, 1651, 1652, 1742, 1744, 1745
Q8R420 Phospholipid-transporting ATPase ABCA3; ATP-binding cassette sub-family A member 3; Xenobiotic-transporting ATPase ABCA3; EC 7.6.2.1; EC 7.6.2.2 from Mus musculus (Mouse) (see paper)
34% identity, 96% coverage: 5:301/309 of query aligns to 530:837/1704 of Q8R420
Sites not aligning to the query:
- 292 E→V: Knockin new born mice are healthy and survive into adulthood without overt signs of respiratory distress. Knockin mice show a severe lung phenotype that begins with alveolar inflammatory cell infiltration at the early stage of the mouse life followed by aberrant lung remodeling with characteristics of diffuse parenchymal lung disease (DPLD)- and emphysema-like alveolar disruption in older mice.
8ee6A Cryo-em structure of human abca7 in pe/ch nanodiscs (see paper)
36% identity, 98% coverage: 1:304/309 of query aligns to 620:932/1808 of 8ee6A
Sites not aligning to the query:
Q99758 Phospholipid-transporting ATPase ABCA3; ABC-C transporter; ATP-binding cassette sub-family A member 3; ATP-binding cassette transporter 3; ATP-binding cassette 3; Xenobiotic-transporting ATPase ABCA3; EC 7.6.2.1; EC 7.6.2.2 from Homo sapiens (Human) (see 15 papers)
34% identity, 96% coverage: 5:301/309 of query aligns to 530:837/1704 of Q99758
- N568 (= N40) to D: in SMDP3; does not affect location in intracellular vesicle membrane; does not affect proteolytic cleavage; does not affect N-glycosylation; loss of ATP hydrolysis activity; decreases ATP binding in vitro; does not affect protein expression; does not affect multivesicular bodies and lamellar bodies location; affects multivesicular bodies and lamellar bodies development; loss of phosphatidylcholine transport; does not affect cholesterol transport; dbSNP:rs121909184
- L579 (≠ I51) to P: in SMDP3; uncertain significance
- R605 (= R77) to Q: in SMDP3; uncertain significance; dbSNP:rs760006956
- S693 (≠ A163) mutation to L: Does not affect protein oligomerization.
- P766 (= P237) to S: in dbSNP:rs45592239
- E801 (≠ F263) to D: in a breast cancer sample; somatic mutation
Sites not aligning to the query:
- 43 R → L: in SMDP3; uncertain significance
- 53 N→Q: Does not affect N-glycosylation. Does not affect protein expression. Does not affect lamellar body membrane location.
- 101 L → P: in SMDP3; loss of intracellular vesicle membrane location; loss of proteolytic cleavage; does not affect N-glycosylation; loss of ATP hydrolysis activity; decreases ATP binding in vitro; dbSNP:rs121909182
- 124 modified: carbohydrate, N-linked (GlcNAc...) asparagine; N→Q: Loss of N-glycosylation. Reduces protein expression by 50%. Affects anterograde trafficking; when associated with Q-140. Reduces protein expression by 85%; when associated with Q-140. Does not affect lamellar body membrane location.
- 140 modified: carbohydrate, N-linked (GlcNAc...) asparagine; N → H: in dbSNP:rs45447801; N→Q: Loss of N-glycosylation. Reduces protein expression by 50%. Affects anterograde trafficking; when associated with Q-124. Reduces protein expression by 85%; when associated with Q-140. Does not affect lamellar body membrane location.
- 173:174 LK→AA: Loss of proteolytic processing.
- 174:175 Cleavage; by CTSL
- 215 Q → K: in SMDP3; loss of lamellar bodies membrane location; loss of proteolytic cleavage; increases cellular free cholesterol and phosphatidylcholine transport; loss of vesicles formation; increases free cholesterol induced cell death; loss of protein oligomerization; dbSNP:rs879159551
- 280 R → C: in SMDP3; uncertain significance; does not affect protein oligomerization; dbSNP:rs201299260
- 288 R → K: in SMDP3; uncertain significance; does not affect protein oligomerization; dbSNP:rs117603931
- 290 L → M: in a breast cancer sample; somatic mutation
- 292 E → V: in SMDP3; uncertain significance; does not affect lamellar bodies membrane location; does not affect proteolytic cleavage; affects lamellar bodies formation; does not affect cholesterol and phosphatidylcholine transport; decreases vesicles formation; does not affect free cholesterol induced cell death; dbSNP:rs149989682
- 945 N→Q: Does not affect lamellar body membrane location. Does not affect protein expression. Does not affect proteolytic processing.
- 982 L → P: in SMDP3; loss of intracellular vesicle membrane location; loss of proteolytic cleavage; does not affect N-glycosylation; dbSNP:rs1402761450
- 1069 H → Q: in a breast cancer sample; somatic mutation
- 1076 N → K: in SMDP3; uncertain significance
- 1221 G → S: in SMDP3; does not affect intracellular vesicle membrane location; does not affect proteolytic cleavage; does not affect N-glycosylation; loss of ATP hydrolysis activity; G→A: Decreases ATP hydrolysis activity of 15% compared to the wild-type.; G→T: Decreases ATP hydrolysis activity of 36% compared to the wild-type.; G→V: Decreases ATP hydrolysis activity of 18% compared to the wild-type.
- 1302 G → E: in SMDP3; uncertain significance
- 1388 K → N: in SMDP3; decreases phosphatidylcholine transport; increases protein abundance; does not affect folding in the endoplasmic reticulum; decreases proteolytic processing; affects lamellar bodies development; reduces free cholesterol transport
- 1553 L → P: in SMDP3; loss of intracellular vesicle membrane location; loss of proteolytic cleavage; does not affect N-glycosylation; dbSNP:rs121909183
- 1580 L → P: in SMDP3; does not affect location in intracellular vesicle membrane; does not affect proteolytic cleavage; does not affect N-glycosylation; loss of ATP hydrolysis activity; decreases ATP binding in vitro; affects the intracellular vesicles development; decreases phosphatidylcholine transport; L→A: Decreases ATP hydrolysis activity of 13% compared to the wild-type.; L→F: Decreases ATP hydrolysis activity of 13% compared to the wild-type.; L→V: Decreases ATP hydrolysis activity of 56% compared to the wild-type.
- 1591 Q → P: in SMDP3; loss of intracellular vesicle membrane location; loss of proteolytic cleavage; does not affect N-glycosylation; dbSNP:rs28936691
7w02A Cryo-em structure of atp-bound abca3 (see paper)
33% identity, 96% coverage: 5:301/309 of query aligns to 495:802/1566 of 7w02A
- binding adenosine-5'-triphosphate: F504 (≠ Y14), N533 (= N40), G534 (= G41), G536 (= G43), K537 (= K44), T538 (= T45), T539 (= T46), Q578 (= Q85), L630 (= L135), S631 (= S136)
- binding magnesium ion: T538 (= T45), Q578 (= Q85)
Sites not aligning to the query:
- binding adenosine-5'-triphosphate: 1277, 1305, 1306, 1307, 1308, 1309, 1310, 1344, 1395, 1398
- binding magnesium ion: 1310, 1344
P78363 Retinal-specific phospholipid-transporting ATPase ABCA4; ATP-binding cassette sub-family A member 4; RIM ABC transporter; RIM proteinv; RmP; Retinal-specific ATP-binding cassette transporter; Stargardt disease protein; EC 7.6.2.1 from Homo sapiens (Human) (see 43 papers)
38% identity, 67% coverage: 5:212/309 of query aligns to 929:1138/2273 of P78363