SitesBLAST
Comparing WP_043917257.1 NCBI__GCF_000877395.1:WP_043917257.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
7qh2C Cryo-em structure of ldh-etfab complex from acetobacterium woodii (see paper)
31% identity, 94% coverage: 18:465/477 of query aligns to 11:463/467 of 7qh2C
- binding flavin-adenine dinucleotide: V73 (≠ P80), G75 (= G82), S76 (= S83), G77 (= G84), T78 (= T85), G79 (≠ S86), L80 (= L87), A83 (≠ G90), C84 (≠ A91), P137 (= P144), G138 (≠ S145), E139 (≠ S146), A142 (= A149), T143 (≠ A151), G146 (= G154), N147 (= N155), S149 (≠ A157), T150 (≠ M158), A152 (≠ S160), G153 (= G161), E203 (= E210), G204 (= G211), I209 (≠ V216), E422 (= E424), H423 (= H425)
- binding fe (iii) ion: H377 (= H380), H384 (= H387), E422 (= E424)
P9WIT1 Uncharacterized FAD-linked oxidoreductase Rv2280; EC 1.-.-.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
31% identity, 88% coverage: 45:466/477 of query aligns to 33:456/459 of P9WIT1
- K354 (≠ R359) modified: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-Cter in protein Pup)
6lpnB Crystal structure of human d-2-hydroxyglutarate dehydrogenase in apo form (see paper)
29% identity, 93% coverage: 23:467/477 of query aligns to 20:466/467 of 6lpnB
- binding flavin-adenine dinucleotide: W40 (≠ A44), P76 (= P80), G78 (= G82), G79 (≠ S83), N80 (≠ G84), T81 (= T85), G82 (≠ S86), M83 (≠ L87), G86 (= G90), S87 (≠ A91), L140 (≠ P144), A142 (≠ S146), C146 (= C150), H147 (≠ A151), G150 (= G154), N151 (= N155), A153 (= A157), T154 (≠ M158), G208 (= G211), I212 (≠ V215), I213 (≠ V216), E423 (= E424), N460 (= N461)
6lpxA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-og) (see paper)
29% identity, 93% coverage: 23:467/477 of query aligns to 19:465/466 of 6lpxA
- binding 2-oxoglutaric acid: R333 (= R332), T337 (≠ F336), K348 (≠ C347), Y379 (vs. gap), H381 (= H380), H388 (= H387), H423 (= H425)
- binding flavin-adenine dinucleotide: W39 (≠ A44), P75 (= P80), Q76 (≠ R81), G77 (= G82), G78 (≠ S83), N79 (≠ G84), T80 (= T85), G81 (≠ S86), M82 (≠ L87), G85 (= G90), S86 (≠ A91), L139 (≠ P144), G140 (≠ S145), A141 (≠ S146), C145 (= C150), G149 (= G154), N150 (= N155), A152 (= A157), T153 (≠ M158), G157 (= G162), G207 (= G211), I212 (≠ V216), E422 (= E424), N459 (= N461)
- binding zinc ion: H381 (= H380), H388 (= H387), E422 (= E424)
6lpuA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with l-2-hydroxyglutarate (l-2-hg) (see paper)
29% identity, 93% coverage: 23:467/477 of query aligns to 19:465/466 of 6lpuA
- binding flavin-adenine dinucleotide: W39 (≠ A44), P75 (= P80), G77 (= G82), G78 (≠ S83), N79 (≠ G84), T80 (= T85), G81 (≠ S86), G85 (= G90), S86 (≠ A91), L139 (≠ P144), G140 (≠ S145), A141 (≠ S146), C145 (= C150), H146 (≠ A151), G148 (≠ A153), G149 (= G154), N150 (= N155), A152 (= A157), T153 (≠ M158), A155 (≠ S160), E206 (= E210), G207 (= G211), I211 (≠ V215), I212 (≠ V216), E422 (= E424), N459 (= N461)
- binding (2s)-2-hydroxypentanedioic acid: R333 (= R332), T337 (≠ F336), K348 (≠ C347), Y379 (vs. gap), H381 (= H380), H388 (= H387), H423 (= H425)
- binding zinc ion: H381 (= H380), H388 (= H387), E422 (= E424)
6lpqA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) (see paper)
29% identity, 93% coverage: 23:467/477 of query aligns to 19:465/466 of 6lpqA
- binding flavin-adenine dinucleotide: W39 (≠ A44), P75 (= P80), G77 (= G82), G78 (≠ S83), N79 (≠ G84), T80 (= T85), G81 (≠ S86), G85 (= G90), S86 (≠ A91), L139 (≠ P144), G140 (≠ S145), A141 (≠ S146), C145 (= C150), H146 (≠ A151), G149 (= G154), N150 (= N155), A152 (= A157), T153 (≠ M158), A155 (≠ S160), G157 (= G162), E206 (= E210), G207 (= G211), I211 (≠ V215), I212 (≠ V216), E422 (= E424), N459 (= N461)
- binding d-malate: M82 (≠ L87), R333 (= R332), T337 (≠ F336), K348 (≠ C347), Y379 (vs. gap), H381 (= H380), H388 (= H387), E422 (= E424), H423 (= H425)
- binding zinc ion: H381 (= H380), H388 (= H387), E422 (= E424)
6lppA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-2-hydroxyglutarate (d-2-hg) (see paper)
29% identity, 93% coverage: 23:467/477 of query aligns to 19:465/466 of 6lppA
- binding (2R)-2-hydroxypentanedioic acid: R333 (= R332), T337 (≠ F336), K348 (≠ C347), Y379 (vs. gap), H381 (= H380), H388 (= H387), N390 (≠ L389), H423 (= H425)
- binding flavin-adenine dinucleotide: W39 (≠ A44), P75 (= P80), G77 (= G82), G78 (≠ S83), N79 (≠ G84), T80 (= T85), G81 (≠ S86), M82 (≠ L87), G85 (= G90), S86 (≠ A91), L139 (≠ P144), G140 (≠ S145), A141 (≠ S146), C145 (= C150), G149 (= G154), N150 (= N155), A152 (= A157), T153 (≠ M158), A155 (≠ S160), G157 (= G162), G207 (= G211), I212 (≠ V216), E422 (= E424), H423 (= H425)
- binding zinc ion: H381 (= H380), H388 (= H387), E422 (= E424)
Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens (Human) (see 7 papers)
29% identity, 93% coverage: 23:467/477 of query aligns to 72:518/521 of Q8N465
- S109 (≠ T61) to W: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs142050154
- N127 (≠ V79) to K: in D2HGA1; uncertain significance; complete loss of catalytic activity; dbSNP:rs762857195
- G131 (≠ S83) to V: in D2HGA1; uncertain significance; complete loss of catalytic activity
- I147 (= I99) to S: in D2HGA1; uncertain significance; severe phenotype; almost complete loss of catalytic activity; dbSNP:rs121434361
- M153 (≠ L105) to T: in D2HGA1; uncertain significance; significant loss of catalytic activity; to V: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs1432270139
- C172 (≠ R124) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs773735172
- P189 (≠ A141) to L: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs587783517
- A205 (= A157) to V: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs750889931
- A231 (≠ M183) to V: in D2HGA1; uncertain significance; significant loss of catalytic activity
- G233 (= G185) to S: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs374535734
- D375 (≠ S321) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs267606759
- R386 (= R332) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- T390 (≠ F336) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Significantly reduced catalytic activity.
- V399 (≠ Y345) to M: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746519212
- K401 (≠ C347) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- R419 (≠ S368) to H: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs199908032
- A426 (≠ V375) to T: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs146578303
- H434 (= H380) binding Zn(2+); mutation to A: Loss of catalytic activity.
- G436 (= G382) to V: slight reduction in catalytic activity
- N439 (= N385) to D: in D2HGA1; uncertain significance; mild phenotype; moderate reduction in catalytic activity; dbSNP:rs121434362
- H441 (= H387) binding Zn(2+); mutation to A: Loss of catalytic activity.
- N443 (≠ L389) binding (R)-2-hydroxyglutarate; mutation to A: Significantly reduced catalytic activity.
- V444 (≠ I390) to A: in D2HGA1; uncertain significance; severe phenotype; significant reduction in catalytic activity; dbSNP:rs121434360
- A446 (≠ F392) to V: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746956176
- E475 (= E424) binding Zn(2+); mutation to A: Loss of catalytic activity.
- H476 (= H425) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- G477 (= G426) to R: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs1453924640
Sites not aligning to the query:
- 15 R → G: in dbSNP:rs4675887
- 169:521 natural variant: Missing (in D2HGA1; uncertain significance)
- 400:521 natural variant: Missing (in D2HGA1; uncertain significance; complete loss of catalytic activity)
8jdeA Crystal structure of mldhd in complex with d-lactate (see paper)
27% identity, 88% coverage: 48:466/477 of query aligns to 35:455/455 of 8jdeA