SitesBLAST
Comparing WP_043917557.1 NCBI__GCF_000877395.1:WP_043917557.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3pm9A Crystal structure of a putative dehydrogenase (rpa1076) from rhodopseudomonas palustris cga009 at 2.57 a resolution
43% identity, 90% coverage: 36:458/468 of query aligns to 37:465/465 of 3pm9A
- active site: A149 (= A147), L159 (≠ S157)
- binding flavin-adenine dinucleotide: P69 (= P68), Q70 (≠ V69), G71 (= G70), G72 (= G71), N73 (= N72), T74 (= T73), G75 (= G74), L76 (= L75), G79 (= G78), Q80 (vs. gap), L91 (= L89), L133 (≠ F131), G134 (= G132), A135 (= A133), C139 (≠ A137), T140 (≠ Q138), G142 (= G140), G143 (= G141), S146 (= S144), T147 (= T145), A149 (= A147), G150 (= G148), E200 (= E198), G201 (= G199), I205 (≠ L203), I206 (= I204), E423 (= E416)
6lpxA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-og) (see paper)
37% identity, 92% coverage: 31:459/468 of query aligns to 38:465/466 of 6lpxA
- binding 2-oxoglutaric acid: R333 (= R325), T337 (≠ A329), K348 (≠ D340), Y379 (≠ V373), H381 (= H375), H388 (= H382), H423 (= H417)
- binding flavin-adenine dinucleotide: W39 (= W32), P75 (= P68), Q76 (≠ V69), G77 (= G70), G78 (= G71), N79 (= N72), T80 (= T73), G81 (= G74), M82 (≠ L75), G85 (= G78), S86 (≠ T79), L139 (≠ F131), G140 (= G132), A141 (= A133), C145 (≠ A137), G149 (= G141), N150 (≠ V142), A152 (≠ S144), T153 (= T145), G157 (= G149), G207 (= G199), I212 (= I204), E422 (= E416), N459 (= N453)
- binding zinc ion: H381 (= H375), H388 (= H382), E422 (= E416)
6lpuA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with l-2-hydroxyglutarate (l-2-hg) (see paper)
37% identity, 92% coverage: 31:459/468 of query aligns to 38:465/466 of 6lpuA
- binding flavin-adenine dinucleotide: W39 (= W32), P75 (= P68), G77 (= G70), G78 (= G71), N79 (= N72), T80 (= T73), G81 (= G74), G85 (= G78), S86 (≠ T79), L139 (≠ F131), G140 (= G132), A141 (= A133), C145 (≠ A137), H146 (≠ Q138), G148 (= G140), G149 (= G141), N150 (≠ V142), A152 (≠ S144), T153 (= T145), A155 (= A147), E206 (= E198), G207 (= G199), I211 (≠ L203), I212 (= I204), E422 (= E416), N459 (= N453)
- binding (2s)-2-hydroxypentanedioic acid: R333 (= R325), T337 (≠ A329), K348 (≠ D340), Y379 (≠ V373), H381 (= H375), H388 (= H382), H423 (= H417)
- binding zinc ion: H381 (= H375), H388 (= H382), E422 (= E416)
6lpqA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) (see paper)
37% identity, 92% coverage: 31:459/468 of query aligns to 38:465/466 of 6lpqA
- binding flavin-adenine dinucleotide: W39 (= W32), P75 (= P68), G77 (= G70), G78 (= G71), N79 (= N72), T80 (= T73), G81 (= G74), G85 (= G78), S86 (≠ T79), L139 (≠ F131), G140 (= G132), A141 (= A133), C145 (≠ A137), H146 (≠ Q138), G149 (= G141), N150 (≠ V142), A152 (≠ S144), T153 (= T145), A155 (= A147), G157 (= G149), E206 (= E198), G207 (= G199), I211 (≠ L203), I212 (= I204), E422 (= E416), N459 (= N453)
- binding d-malate: M82 (≠ L75), R333 (= R325), T337 (≠ A329), K348 (≠ D340), Y379 (≠ V373), H381 (= H375), H388 (= H382), E422 (= E416), H423 (= H417)
- binding zinc ion: H381 (= H375), H388 (= H382), E422 (= E416)
6lppA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-2-hydroxyglutarate (d-2-hg) (see paper)
37% identity, 92% coverage: 31:459/468 of query aligns to 38:465/466 of 6lppA
- binding (2R)-2-hydroxypentanedioic acid: R333 (= R325), T337 (≠ A329), K348 (≠ D340), Y379 (≠ V373), H381 (= H375), H388 (= H382), N390 (≠ T384), H423 (= H417)
- binding flavin-adenine dinucleotide: W39 (= W32), P75 (= P68), G77 (= G70), G78 (= G71), N79 (= N72), T80 (= T73), G81 (= G74), M82 (≠ L75), G85 (= G78), S86 (≠ T79), L139 (≠ F131), G140 (= G132), A141 (= A133), C145 (≠ A137), G149 (= G141), N150 (≠ V142), A152 (≠ S144), T153 (= T145), A155 (= A147), G157 (= G149), G207 (= G199), I212 (= I204), E422 (= E416), H423 (= H417)
- binding zinc ion: H381 (= H375), H388 (= H382), E422 (= E416)
6lpnB Crystal structure of human d-2-hydroxyglutarate dehydrogenase in apo form (see paper)
37% identity, 92% coverage: 31:459/468 of query aligns to 39:466/467 of 6lpnB
- binding flavin-adenine dinucleotide: W40 (= W32), P76 (= P68), G78 (= G70), G79 (= G71), N80 (= N72), T81 (= T73), G82 (= G74), M83 (≠ L75), G86 (= G78), S87 (≠ T79), L140 (≠ F131), A142 (= A133), C146 (≠ A137), H147 (≠ Q138), G150 (= G141), N151 (≠ V142), A153 (≠ S144), T154 (= T145), G208 (= G199), I212 (≠ L203), I213 (= I204), E423 (= E416), N460 (= N453)
Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens (Human) (see 7 papers)
37% identity, 92% coverage: 31:461/468 of query aligns to 91:520/521 of Q8N465
- S109 (≠ T49) to W: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs142050154
- N127 (≠ V67) to K: in D2HGA1; uncertain significance; complete loss of catalytic activity; dbSNP:rs762857195
- G131 (= G71) to V: in D2HGA1; uncertain significance; complete loss of catalytic activity
- I147 (≠ M86) to S: in D2HGA1; uncertain significance; severe phenotype; almost complete loss of catalytic activity; dbSNP:rs121434361
- M153 (= M92) to T: in D2HGA1; uncertain significance; significant loss of catalytic activity; to V: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs1432270139
- C172 (≠ V111) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs773735172
- P189 (= P128) to L: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs587783517
- A205 (≠ S144) to V: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs750889931
- A231 (= A170) to V: in D2HGA1; uncertain significance; significant loss of catalytic activity
- G233 (= G172) to S: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs374535734
- D375 (≠ S314) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs267606759
- R386 (= R325) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- T390 (≠ A329) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Significantly reduced catalytic activity.
- V399 (≠ I338) to M: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746519212
- K401 (≠ D340) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- R419 (≠ E358) to H: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs199908032
- A426 (≠ L364) to T: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs146578303
- H434 (= H375) binding Zn(2+); mutation to A: Loss of catalytic activity.
- G436 (= G377) to V: slight reduction in catalytic activity
- N439 (= N380) to D: in D2HGA1; uncertain significance; mild phenotype; moderate reduction in catalytic activity; dbSNP:rs121434362
- H441 (= H382) binding Zn(2+); mutation to A: Loss of catalytic activity.
- N443 (≠ T384) binding (R)-2-hydroxyglutarate; mutation to A: Significantly reduced catalytic activity.
- V444 (≠ L385) to A: in D2HGA1; uncertain significance; severe phenotype; significant reduction in catalytic activity; dbSNP:rs121434360
- A446 (≠ P387) to V: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746956176
- E475 (= E416) binding Zn(2+); mutation to A: Loss of catalytic activity.
- H476 (= H417) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- G477 (= G418) to R: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs1453924640
Sites not aligning to the query:
- 15 R → G: in dbSNP:rs4675887
- 169:521 natural variant: Missing (in D2HGA1; uncertain significance)
- 400:521 natural variant: Missing (in D2HGA1; uncertain significance; complete loss of catalytic activity)
P39976 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
32% identity, 97% coverage: 3:458/468 of query aligns to 28:496/496 of P39976
Sites not aligning to the query:
- 17 modified: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)
7qh2C Cryo-em structure of ldh-etfab complex from acetobacterium woodii (see paper)
31% identity, 96% coverage: 10:457/468 of query aligns to 14:463/467 of 7qh2C