SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_043920126.1 NCBI__GCF_000877395.1:WP_043920126.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 6 hits to proteins with known functional sites (download)

5bokA Ferredoxin component of 3-nitrotoluene dioxygenase from diaphorobacter sp. Strain ds2
30% identity, 91% coverage: 2:102/111 of query aligns to 2:101/102 of 5bokA

query
sites
5bokA
T
 
N
W
 
W
T
 
I
D
 
D
I
 
A
G
 
A
H
 
A
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R
D
 
D
E
 
E
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V
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P
L
 
E
R
 
G
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D
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V
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I
K
 
G
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I
K
 
N
T
 
I
I
 
V
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G
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K
C
 
E
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I
A
 
A
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L
F
 
Y
R
 
E
T
 
V
A
 
A
E
 
-
A
 
G
E
 
E
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I
F
 
Y
A
 
A
T
 
T
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D
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N
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T
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T
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x
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A
G
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A
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R
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D
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K
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Q
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Y
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I
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N
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L
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K
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L

P0A185 Naphthalene 1,2-dioxygenase system, ferredoxin component from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 2 papers)
35% identity, 74% coverage: 22:103/111 of query aligns to 23:104/104 of P0A185

query
sites
P0A185
T
 
T
I
 
V
G
 
E
G
 
G
C
 
K
V
 
E
A
 
L
V
 
A
F
 
L
R
 
Y
T
 
E
A
 
V
E
 
E
A
 
G
E
 
E
V
 
I
F
 
Y
A
 
A
T
 
T
G
 
D
G
 
N
S
 
L
C
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C
P
 
T
H
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H
K
 
G
G
 
S
G
 
A
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R
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M
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S
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D
G
 
G
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Y
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L
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E
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G
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R
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I
T
 
E
C
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C
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P
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L
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H
N
 
Q
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G
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R
I
 
F
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D
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V
T
 
C
S
 
T
G
 
G
A
 
K
V
 
A
L
 
L
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C
A
 
A
D
 
P
D
 
V
G
 
T
Q
 
Q
-
 
N
V
 
I
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K
T
 
T
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Y
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P
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R
 
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I
E
 
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N
G
 
L
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R
L
 
V
L
 
M
I
 
I
D
 
D
L
 
L
G
 
S

Sites not aligning to the query:

2qpzA Naphthalene 1,2-dioxygenase rieske ferredoxin (see paper)
35% identity, 74% coverage: 22:103/111 of query aligns to 22:103/103 of 2qpzA

query
sites
2qpzA
T
 
T
I
 
V
G
 
E
G
 
G
C
 
K
V
 
E
A
 
L
V
 
A
F
 
L
R
 
Y
T
 
E
A
 
V
E
 
E
A
 
G
E
 
E
V
 
I
F
 
Y
A
 
A
T
 
T
G
 
D
G
 
N
S
 
L
C
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C
P
 
T
H
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H
K
x
G
G
 
S
G
 
A
P
 
R
L
 
M
A
 
S
D
 
D
G
 
G
I
 
Y
V
 
L
H
 
E
D
 
G
R
 
R
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E
V
 
I
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E
C
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C
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P
L
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L
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H
N
 
Q
W
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F
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D
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C
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G
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A
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L
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C
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A
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x
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V
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T
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Q
-
 
N
V
 
I
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K
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T
Y
 
Y
P
 
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K
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I
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E
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N
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I
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D
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L
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S

Q17938 Cholesterol 7-desaturase; Cholesterol desaturase daf-36; Rieske oxygenase DAF-36/Neverland; DAF-36/NVD; EC 1.14.19.21 from Caenorhabditis elegans (see paper)
26% identity, 61% coverage: 19:86/111 of query aligns to 97:168/428 of Q17938

query
sites
Q17938
K
 
E
V
 
I
K
 
T
T
 
V
I
 
L
G
 
G
G
 
Q
C
 
F
V
 
L
A
 
S
V
 
L
F
 
I
R
 
R
T
 
S
A
 
E
E
 
S
A
 
G
E
 
A
V
 
V
F
 
Y
A
 
I
T
 
T
G
 
D
G
 
S
S
 
Y
C
|
C
P
 
P
H
 
H
K
 
I
G
 
G
G
 
A
P
 
N
L
 
F
A
 
N
D
 
I
G
 
G
-
 
G
-
 
R
I
 
V
V
 
V
H
 
R
D
 
D
R
 
N
K
 
C
V
 
I
T
 
Q
C
 
C
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P
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F
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H
N
 
G
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W
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I
I
 
F
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A
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G
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C
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V
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E
A
 
V
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P
-
 
Y
D
 
D
D
 
E
G
 
G
Q
 
R
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I
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P

Sites not aligning to the query:

D0C9N6 Carnitine monooxygenase oxygenase subunit; Carnitine monooxygenase alpha subunit; EC 1.14.13.239 from Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / JCM 6841 / CCUG 19606 / CIP 70.34 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81) (see paper)
28% identity, 93% coverage: 2:104/111 of query aligns to 43:156/371 of D0C9N6

query
sites
D0C9N6
T
 
S
W
 
W
T
 
I
D
 
C
I
 
V
G
 
A
H
 
H
I
 
S
D
 
S
E
 
E
I
 
L
P
 
A
L
 
Q
R
 
P
G
 
N
-
 
D
-
 
Y
-
 
I
A
 
T
R
 
R
K
 
K
V
 
V
K
 
-
T
 
-
I
 
I
G
 
G
G
 
E
C
 
N
V
 
I
A
 
V
V
 
I
F
 
I
R
 
R
T
 
G
A
 
K
E
 
D
A
 
S
E
 
V
V
 
L
F
 
R
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A
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Y
G
 
N
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V
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C
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P
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H
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G
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E
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L
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L
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G
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S
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G
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D
 
A
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K
K
 
N
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V
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I
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T
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C
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P
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Y
H
 
H
N
 
A
W
 
W
V
 
T
I
 
F
D
 
K
L
 
L
T
 
D
S
 
G
G
 
S
A
 
L
V
 
A
L
 
L
G
 
A
A
 
R
D
 
N
D
 
C
G
 
D
Q
 
H
V
 
V
P
 
E
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S
Y
 
F
-
 
D
-
 
K
-
 
E
-
 
N
-
 
S
-
 
S
-
 
M
-
 
V
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P
V
 
L
R
 
K
V
 
V
E
 
E
E
 
E
-
 
Y
D
 
A
G
 
G
R
 
F
L
 
L
L
 
F
I
 
I
D
 
N
L
 
M
G
 
D
E
 
E

Sites not aligning to the query:

2i7fA Sphingomonas yanoikuyae b1 ferredoxin (see paper)
38% identity, 68% coverage: 27:101/111 of query aligns to 27:100/102 of 2i7fA

query
sites
2i7fA
V
 
L
A
 
A
V
 
V
F
 
Y
R
 
N
T
 
V
A
 
-
E
 
D
A
 
G
E
 
E
V
 
V
F
 
F
A
 
V
T
 
T
G
 
D
G
 
N
S
 
L
C
|
C
P
 
T
H
|
H
K
x
G
G
 
N
G
 
A
P
 
M
L
 
L
A
 
T
D
 
D
G
 
G
I
 
Y
V
 
Q
H
 
D
D
 
G
R
 
T
K
 
I
V
 
I
T
 
E
C
|
C
P
 
P
L
x
F
H
|
H
N
 
G
W
 
G
V
 
S
I
 
F
D
 
D
L
 
I
T
 
A
S
 
T
G
 
G
A
 
A
V
 
A
L
 
-
G
 
K
A
 
A
D
 
F
D
 
P
G
 
C
Q
 
Q
V
 
I
P
 
P
-
 
I
-
 
K
T
 
T
Y
 
Y
P
 
P
V
 
V
R
 
T
V
 
I
E
 
-
E
 
E
D
 
D
G
 
G
R
 
W
L
 
V
L
 
C
I
 
I
D
 
D

Query Sequence

>WP_043920126.1 NCBI__GCF_000877395.1:WP_043920126.1
MTWTDIGHIDEIPLRGARKVKTIGGCVAVFRTAEAEVFATGGSCPHKGGPLADGIVHDRK
VTCPLHNWVIDLTSGAVLGADDGQVPTYPVRVEEDGRLLIDLGELRLRRSA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory