SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_044620696.1 NCBI__GCF_000940995.1:WP_044620696.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8y4wA Sialic acid bound form of tripartite atp-independent periplasmic (trap) transporter from fusobacterium nucleatum.
27% identity, 67% coverage: 5:114/165 of query aligns to 7:118/612 of 8y4wA

query
sites
8y4wA
L
 
L
D
 
E
K
 
E
Y
 
W
L
 
L
E
 
G
N
 
G
T
 
S
L
 
L
A
 
F
C
 
I
I
 
G
L
 
M
L
 
F
A
 
V
V
 
I
M
 
L
V
 
V
V
 
M
A
 
Q
I
 
I
F
 
F
T
 
S
Q
 
R
V
 
-
V
 
-
T
 
-
R
 
Q
T
 
I
L
 
F
D
 
N
I
 
S
S
 
P
L
 
L
S
 
I
W
 
W
T
 
S
E
 
E
E
 
E
L
 
L
A
 
S
R
 
R
Y
 
L
C
 
I
F
 
F
I
 
V
W
 
Y
L
 
V
V
 
G
Y
 
L
I
 
L
G
 
G
V
 
V
S
 
S
F
 
M
A
 
G
A
 
I
S
 
R
R
 
S
K
 
Q
C
 
Q
H
 
H
I
 
I
K
 
M
I
 
I
D
 
D
A
 
F
I
 
L
A
 
Y
M
 
A
L
 
K
L
 
F
D
 
P
E
 
K
K
 
S
E
 
M
K
 
Q
K
 
K
-
 
I
-
 
I
-
 
F
-
 
T
-
 
I
-
 
I
Y
 
Q
L
 
I
S
 
L
L
 
I
L
 
L
A
 
A
D
 
C
L
 
L
V
 
I
F
 
F
F
 
F
A
 
L
F
 
Y
S
 
F
S
 
G
F
 
Y
I
 
D
L
 
L
F
 
F
H
 
I
S
 
K
T
 
K
Q
 
E
M
 
E
V
 
I
L
 
-
E
 
E
L
 
I
Y
 
V
H
 
S
L
 
L
G
 
G

Sites not aligning to the query:

Query Sequence

>WP_044620696.1 NCBI__GCF_000940995.1:WP_044620696.1
MIKWLDKYLENTLACILLAVMVVAIFTQVVTRTLDISLSWTEELARYCFIWLVYIGVSFA
ASRKCHIKIDAIAMLLDEKEKKYLSLLADLVFFAFSSFILFHSTQMVLELYHLGQTSPAL
GLPMWIVYLAGPVGFALTSFRLIQQMVITFDELEALKLQQAKASE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory