Comparing WP_047005877.1 NCBI__GCF_001010925.1:WP_047005877.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
7arlD Lolcde in complex with lipoprotein and adp (see paper)
52% identity, 94% coverage: 12:223/226 of query aligns to 7:218/222 of 7arlD
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
52% identity, 94% coverage: 12:223/226 of query aligns to 10:221/233 of P75957
7mdyC Lolcde nucleotide-bound
52% identity, 94% coverage: 12:223/226 of query aligns to 7:218/226 of 7mdyC
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
52% identity, 94% coverage: 12:223/226 of query aligns to 9:220/229 of 7v8iD
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
45% identity, 97% coverage: 7:225/226 of query aligns to 4:221/648 of P75831
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
46% identity, 89% coverage: 25:225/226 of query aligns to 17:216/223 of 2pclA
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
40% identity, 97% coverage: 7:225/226 of query aligns to 3:220/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
40% identity, 97% coverage: 7:225/226 of query aligns to 3:220/592 of 5lj7A
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
41% identity, 98% coverage: 5:225/226 of query aligns to 2:221/650 of 5ws4A
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
42% identity, 97% coverage: 7:226/226 of query aligns to 1:224/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
42% identity, 97% coverage: 7:226/226 of query aligns to 1:224/230 of 1l2tA
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
39% identity, 97% coverage: 7:225/226 of query aligns to 3:220/226 of 5xu1B
P9WQK5 Uncharacterized ABC transporter ATP-binding protein Rv0073 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
42% identity, 94% coverage: 8:220/226 of query aligns to 4:215/330 of P9WQK5
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
36% identity, 96% coverage: 6:223/226 of query aligns to 2:215/230 of 6z4wA
A0A0H2ZM82 Cell division ATP-binding protein FtsE from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
36% identity, 96% coverage: 6:223/226 of query aligns to 2:215/230 of A0A0H2ZM82
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
36% identity, 96% coverage: 6:223/226 of query aligns to 2:215/229 of 6z67B
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
39% identity, 96% coverage: 7:224/226 of query aligns to 1:211/343 of P30750
Sites not aligning to the query:
7w79A Heme exporter hrtba in complex with mn-amppnp (see paper)
40% identity, 97% coverage: 4:223/226 of query aligns to 1:213/216 of 7w79A
7w78A Heme exporter hrtba in complex with mg-amppnp (see paper)
40% identity, 97% coverage: 4:223/226 of query aligns to 1:213/218 of 7w78A
8w6iD Cryo-em structure of escherichia coli str k12 ftsex complex with atp- gamma-s in peptidisc
42% identity, 87% coverage: 27:223/226 of query aligns to 18:213/219 of 8w6iD
Sites not aligning to the query:
>WP_047005877.1 NCBI__GCF_001010925.1:WP_047005877.1
MSNAEAVVSLRNLTRSFQQGDVRIDVLRGVDLDVGPGEIVALLGQSGSGKSTMLQAVGLL
EGGFGGSIRIAGKEASQLDAAERTSLRREHLGFVYQFHHLLPDFTAQENVVLPQLLLGTK
RAEAELRAQELLGSLGLEHRLTHRPSKLSGGEQQRVAVARALANKPQLVLADEPTGNLDE
KTSERVLSEFLELVRGQGSAALVATHNERLAARMDRVVRLHDGVIE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory