SitesBLAST
Comparing WP_047093429.1 NCBI__GCF_001013305.1:WP_047093429.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4hcxA Structure of icdh-1 from m.Tuberculosis complexed with NADPH & mn2+ (see paper)
71% identity, 98% coverage: 3:402/409 of query aligns to 2:402/402 of 4hcxA
- binding manganese (ii) ion: D274 (= D274), D278 (= D278)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: A73 (= A74), T74 (= T75), T76 (= T77), E305 (= E305), H308 (= H308), G309 (= G309), T310 (= T310), V311 (= V311), R313 (= R313), H314 (= H314), N327 (= N327)
2qfyA Crystal structure of saccharomyces cerevesiae mitochondrial NADP(+)- dependent isocitrate dehydrogenase in complex with a-ketoglutarate (see paper)
64% identity, 99% coverage: 2:404/409 of query aligns to 2:409/411 of 2qfyA
2qfxA Crystal structure of saccharomyces cerevesiae mitochondrial NADP(+)- dependent isocitrate dehydrogenase in complex with NADPH, a- ketoglutarate and ca(2+) (see paper)
64% identity, 99% coverage: 2:404/409 of query aligns to 2:409/410 of 2qfxA
- binding 2-oxoglutaric acid: T77 (= T77), S94 (= S94), R100 (= R100), R109 (= R109), D276 (= D274)
- binding calcium ion: D276 (= D274), D280 (= D278)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: A74 (= A74), T75 (= T75), N96 (= N96), L289 (= L287), H310 (= H308), G311 (= G309), T312 (= T310), V313 (= V311), T314 (= T312), R315 (= R313), H316 (= H314), T328 (= T326), N329 (= N327)
2qfvA Crystal structure of saccharomyces cerevesiae mitochondrial NADP(+)- dependent isocitrate dehydrogenase in complex with NADP(+) (see paper)
64% identity, 99% coverage: 2:404/409 of query aligns to 2:409/410 of 2qfvA
- binding nadp nicotinamide-adenine-dinucleotide phosphate: A74 (= A74), T75 (= T75), I76 (= I76), T77 (= T77), N96 (= N96), H310 (= H308), G311 (= G309), T312 (= T310), V313 (= V311), T314 (= T312), R315 (= R313), H316 (= H314), N329 (= N327), D377 (= D374)
P48735 Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Homo sapiens (Human) (see 4 papers)
62% identity, 99% coverage: 3:406/409 of query aligns to 43:452/452 of P48735
- P158 (= P118) to L: in GLM; somatic mutation
- P162 (= P122) to S: in GLM; somatic mutation
- R172 (= R132) to G: in GLM; somatic mutation; reduces enzymatic activity; dbSNP:rs1057519906; to K: in GLM; somatic mutation; reduces enzymatic activity; dbSNP:rs121913503; to M: in GLM; somatic mutation; reduces enzymatic activity; dbSNP:rs121913503; to S: found in patients with cartilagenous tumors; dbSNP:rs1057519736; to T: found in patients with cartilagenous tumors; to W: found in patients with cartilagenous tumors; dbSNP:rs1057519906
- K413 (= K373) modified: N6-acetyllysine; mutation to A: 44-fold loss in activity.; mutation to Q: 20-fold decrease in Vmax.; mutation to R: No appreciable difference in Km for isocitrate and NADP.
P33198 Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Sus scrofa (Pig) (see 2 papers)
62% identity, 99% coverage: 3:406/409 of query aligns to 12:421/421 of P33198
- T86 (= T77) binding D-threo-isocitrate
- 103:109 (vs. 94:100, 100% identical) binding D-threo-isocitrate
- R118 (= R109) binding D-threo-isocitrate
- R141 (= R132) binding D-threo-isocitrate
- Y148 (= Y139) Critical for catalysis; mutation to F: Large decrease in Vmax and insignificant change in KM for isocitrate and NADP.
- K220 (= K210) Critical for catalysis; mutation K->Q,Y: Large decrease in Vmax and insignificant change in KM for isocitrate and NADP.
- D260 (= D251) binding Mn(2+)
- D283 (= D274) binding Mn(2+)
5h3eB Crystal structure of mouse isocitrate dehydrogenases 2 k256q mutant complexed with isocitrate (see paper)
62% identity, 99% coverage: 3:405/409 of query aligns to 2:410/410 of 5h3eB
6adiA Crystal structures of idh2 r140q in complex with ag-881 (see paper)
62% identity, 99% coverage: 3:406/409 of query aligns to 3:412/418 of 6adiA
- binding 6-(6-chloropyridin-2-yl)-N2,N4-bis[(2R)-1,1,1-trifluoropropan-2-yl]-1,3,5-triazine-2,4-diamine: V254 (= V254), V257 (≠ A257), D272 (= D272), V275 (= V275), Q276 (= Q276), I279 (= I279)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: T75 (= T75), I76 (= I76), T77 (= T77), N96 (= N96), E305 (= E305), H308 (= H308), G309 (= G309), T310 (= T310), V311 (= V311), H314 (= H314), T326 (= T326), N327 (= N327)
5i96A Crystal structure of human mitochondrial isocitrate dehydrogenase (idh2) r140q mutant homodimer in complex with ag-221 (enasidenib) inhibitor. (see paper)
62% identity, 99% coverage: 3:406/409 of query aligns to 3:412/417 of 5i96A
- binding 2-methyl-1-[(4-[6-(trifluoromethyl)pyridin-2-yl]-6-{[2-(trifluoromethyl)pyridin-4-yl]amino}-1,3,5-triazin-2-yl)amino]propan-2-ol: Y271 (= Y271), D272 (= D272), V275 (= V275), Q276 (= Q276), I279 (= I279)
- binding calcium ion: D274 (= D274), S277 (= S277)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: T75 (= T75), T77 (= T77), E305 (= E305), H308 (= H308), G309 (= G309), T310 (= T310), V311 (= V311), T312 (= T312), R313 (= R313), H314 (= H314), N327 (= N327)
5i95A Crystal structure of human mitochondrial isocitrate dehydrogenase r140q mutant homodimer bound to NADPH and alpha-ketoglutaric acid (see paper)
62% identity, 99% coverage: 3:406/409 of query aligns to 3:412/413 of 5i95A
- binding 2-oxoglutaric acid: T77 (= T77), S94 (= S94), N96 (= N96), R109 (= R109), D274 (= D274)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: T75 (= T75), I76 (= I76), T77 (= T77), N96 (= N96), H308 (= H308), G309 (= G309), T310 (= T310), V311 (= V311), T312 (= T312), R313 (= R313), H314 (= H314), N327 (= N327)
4ja8A Complex of mitochondrial isocitrate dehydrogenase r140q mutant with agi-6780 inhibitor (see paper)
62% identity, 99% coverage: 3:406/409 of query aligns to 3:412/416 of 4ja8A