SitesBLAST
Comparing WP_047271515.1 NCBI__GCF_002893965.1:WP_047271515.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3qe3A Sheep liver sorbitol dehydrogenase (see paper)
32% identity, 97% coverage: 9:346/347 of query aligns to 3:343/351 of 3qe3A
- active site: C39 (= C45), G40 (= G46), S41 (= S47), H44 (= H50), H64 (= H70), E65 (= E71), R94 (≠ G100), D97 (≠ A103), C100 (≠ F106), S108 (= S114), F112 (≠ T118), P151 (= P161), G155 (≠ A165), K339 (= K342)
- binding glycerol: Y45 (= Y51), F54 (≠ S60), T116 (≠ S122), R293 (= R295)
- binding zinc ion: C39 (= C45), H64 (= H70), E65 (= E71)
P07846 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Ovis aries (Sheep) (see paper)
32% identity, 97% coverage: 9:346/347 of query aligns to 7:346/354 of P07846
- C43 (= C45) binding Zn(2+)
- Y49 (= Y51) binding substrate
- H67 (= H70) binding Zn(2+)
- E68 (= E71) binding Zn(2+)
- E153 (= E160) binding substrate
- R296 (= R295) binding substrate
- Y297 (≠ F296) binding substrate
6dkhC The crystal structure of l-idonate 5-dehydrogenase from escherichia coli str. K-12 substr. Mg1655
33% identity, 90% coverage: 36:347/347 of query aligns to 34:346/346 of 6dkhC
Q00796 Sorbitol dehydrogenase; SDH; (R,R)-butanediol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.4; EC 1.1.1.14; EC 1.1.1.56; EC 1.1.1.9 from Homo sapiens (Human) (see 10 papers)
31% identity, 98% coverage: 8:346/347 of query aligns to 8:349/357 of Q00796
- C45 (= C45) binding Zn(2+)
- H70 (= H70) binding Zn(2+)
- E71 (= E71) binding Zn(2+)
- R110 (= R110) to P: in HMNR8; results in protein aggregation
- H135 (≠ L139) to R: in HMNR8; results in protein aggregation
- A153 (≠ S157) to D: in HMNR8; uncertain significance; results in protein aggregation; dbSNP:rs145813597
- I184 (= I188) binding NAD(+)
- D204 (= D208) binding NAD(+)
- R209 (≠ P213) binding NAD(+)
- Q239 (≠ V234) to L: in dbSNP:rs1042079
- N269 (≠ R264) to T: in dbSNP:rs930337
- VGL 273:275 (≠ LGL 268:270) binding NAD(+)
- VFR 297:299 (≠ SFR 293:295) binding NAD(+)
- V322 (≠ L318) to I: in HMNR8; uncertain significance; dbSNP:rs149975952
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
1pl6A Human sdh/nadh/inhibitor complex (see paper)
31% identity, 98% coverage: 8:346/347 of query aligns to 7:348/356 of 1pl6A
- active site: C44 (= C45), G45 (= G46), S46 (= S47), H49 (= H50), H69 (= H70), E70 (= E71), R99 (≠ G100), D102 (≠ A103), C105 (≠ F106), S113 (= S114), F117 (≠ T118), P156 (= P161), G160 (≠ A165), K344 (= K342)
- binding 4-[2-(hydroxymethyl)pyrimidin-4-yl]-n,n-dimethylpiperazine-1-sulfonamide: C44 (= C45), S46 (= S47), I56 (≠ A57), F59 (≠ S60), H69 (= H70), E155 (= E160), L274 (= L270), F297 (= F294)
- binding nicotinamide-adenine-dinucleotide: G181 (= G186), P182 (= P187), I183 (= I188), D203 (= D208), L204 (≠ V209), R208 (≠ P213), C249 (= C245), T250 (= T246), V272 (≠ L268), G273 (= G269), L274 (= L270), F297 (= F294), R298 (= R295)
- binding zinc ion: C44 (= C45), H69 (= H70)
P27867 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Rattus norvegicus (Rat) (see paper)
30% identity, 97% coverage: 9:346/347 of query aligns to 9:349/357 of P27867
- C45 (= C45) binding Zn(2+)
- H70 (= H70) binding Zn(2+)
- E71 (= E71) binding Zn(2+)
- E156 (= E160) binding Zn(2+)
- D204 (= D208) binding NAD(+)
- R209 (≠ P213) binding NAD(+)
- VGM 273:275 (≠ LGL 268:270) binding NAD(+)
- VFR 297:299 (≠ SFR 293:295) binding NAD(+)
1e3jA Ketose reductase (sorbitol dehydrogenase) from silverleaf whitefly (see paper)
30% identity, 97% coverage: 9:345/347 of query aligns to 2:344/348 of 1e3jA
- active site: C38 (= C45), G39 (= G46), S40 (= S47), H43 (= H50), H63 (= H70), E64 (= E71), C93 (≠ G100), C96 (≠ A103), C99 (≠ F106), C107 (≠ S114), T111 (= T118), P150 (= P161), G154 (≠ A165), K341 (= K342)
- binding phosphate ion: A174 (≠ C185), A196 (≠ D208), R197 (≠ V209), S198 (≠ H210), R201 (≠ P213)
- binding zinc ion: C38 (= C45), H63 (= H70), E64 (= E71), C93 (≠ G100), C96 (≠ A103), C99 (≠ F106), C107 (≠ S114)
7y9pA Xylitol dehydrogenase s96c/s99c/y102c mutant(thermostabilized form) from pichia stipitis (see paper)
30% identity, 92% coverage: 27:345/347 of query aligns to 24:354/357 of 7y9pA
5vm2A Crystal structure of eck1772, an oxidoreductase/dehydrogenase of unknown specificity involved in membrane biogenesis from escherichia coli
27% identity, 95% coverage: 13:342/347 of query aligns to 7:335/347 of 5vm2A
- active site: C39 (= C45), G40 (= G46), S41 (= S47), H44 (= H50), H65 (= H70), E66 (= E71), C95 (≠ G100), C98 (≠ A103), C101 (≠ F106), C109 (≠ S114), D113 (≠ T118), P153 (= P161), G157 (≠ A165)
- binding magnesium ion: H65 (= H70), E66 (= E71), E152 (= E160)
- binding zinc ion: C95 (≠ G100), C98 (≠ A103), C101 (≠ F106), C109 (≠ S114)
Sites not aligning to the query:
B6HI95 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255) (Penicillium chrysogenum) (see paper)
27% identity, 97% coverage: 2:336/347 of query aligns to 3:359/385 of B6HI95
- DI 212:213 (≠ DV 208:209) mutation to SR: Alters cofactor specificity from NAD to NADP; when associated with T-358.
- S358 (≠ K335) mutation to T: Alters cofactor specificity from NAD to NADP; when associated with 212-SR-213.
O58389 L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (see 2 papers)
28% identity, 93% coverage: 24:345/347 of query aligns to 21:345/348 of O58389
- C42 (= C45) binding Zn(2+)
- T44 (≠ S47) mutation to A: Total loss of enzymatic activity.
- H67 (= H70) binding Zn(2+)
- E68 (= E71) binding Zn(2+)
- C97 (≠ G100) binding Zn(2+)
- C100 (≠ A103) binding Zn(2+)
- C103 (≠ F106) binding Zn(2+)
- C111 (≠ S114) binding Zn(2+)
- E152 (= E160) mutation E->A,Q: Almost complete loss of enzymatic activity.; mutation to C: 120-fold decrease in catalytic efficiency.; mutation to D: Shows 3-fold higher turnover rate and reduced affinities toward L-threonine and NAD(+), compared to wild-type.; mutation to K: Total loss of enzymatic activity.
- L179 (≠ I188) binding NAD(+)
- E199 (≠ D208) binding NAD(+); mutation to A: Large decrease in affinity for NAD(+).
- R204 (≠ P213) binding NAD(+); mutation to A: Large decrease in affinity for NAD(+).
- LGL 266:268 (= LGL 268:270) binding NAD(+)
- IT 291:292 (vs. gap) binding NAD(+)
- R294 (≠ F294) mutation to A: 4000-fold decrease in catalytic efficiency.
2dfvA Hyperthermophilic threonine dehydrogenase from pyrococcus horikoshii (see paper)
28% identity, 93% coverage: 24:345/347 of query aligns to 19:343/346 of 2dfvA
- active site: C40 (= C45), G41 (= G46), T42 (≠ S47), H45 (= H50), H65 (= H70), E66 (= E71), C95 (≠ G100), C98 (≠ A103), C101 (≠ F106), C109 (≠ S114), K113 (≠ T118), P151 (= P161), A155 (= A165), K340 (= K342)
- binding nicotinamide-adenine-dinucleotide: G175 (= G186), P176 (= P187), L177 (≠ I188), E197 (≠ D208), P198 (≠ V209), R202 (≠ P213), F241 (≠ C245), S242 (≠ T246), A244 (≠ N248), L264 (= L268), G265 (= G269), L266 (= L270), I289 (vs. gap), T290 (vs. gap)
- binding zinc ion: C95 (≠ G100), C101 (≠ F106), C109 (≠ S114)
Q7SI09 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (see 2 papers)
25% identity, 95% coverage: 7:336/347 of query aligns to 7:349/363 of Q7SI09
- C53 (= C45) binding Zn(2+)
- F59 (≠ Y51) mutation F->A,S,Y: No effect.
- H78 (= H70) binding Zn(2+)
- E79 (= E71) binding Zn(2+)
- C108 (≠ G100) binding Zn(2+)
- C111 (≠ A103) binding Zn(2+)
- C114 (≠ F106) binding Zn(2+)
- C122 (≠ S114) binding Zn(2+)
- E163 (= E160) binding Zn(2+)
- PI 190:191 (= PI 187:188) binding NAD(+)
- D211 (= D208) binding NAD(+)
- DI 211:212 (≠ DV 208:209) mutation to SR: Alters cofactor specificity from NAD to NADP; when associated with T-348.
- R216 (≠ P213) binding NAD(+)
- I282 (≠ L268) binding NAD(+)
- QYR 306:308 (≠ SFR 293:295) binding NAD(+)
- S348 (≠ K335) mutation to T: Alters cofactor specificity from NAD to NADP; when associated with 211-SR-212.
3m6iA L-arabinitol 4-dehydrogenase (see paper)
25% identity, 95% coverage: 7:336/347 of query aligns to 3:345/358 of 3m6iA
- active site: C49 (= C45), G50 (= G46), S51 (= S47), H54 (= H50), H74 (= H70), E75 (= E71), C104 (≠ G100), C107 (≠ A103), C110 (≠ F106), C118 (≠ S114), D122 (≠ T118), P160 (= P161), A164 (= A165)
- binding nicotinamide-adenine-dinucleotide: C49 (= C45), V163 (= V164), G185 (= G186), P186 (= P187), I187 (= I188), D207 (= D208), R212 (≠ P213), C255 (= C245), T256 (= T246), I278 (≠ L268), G279 (= G269), V280 (≠ L270), R304 (= R295)
- binding zinc ion: C49 (= C45), H74 (= H70), C104 (≠ G100), C107 (≠ A103), C110 (≠ F106), C118 (≠ S114)
Sites not aligning to the query:
A2QAC0 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) (see 2 papers)
27% identity, 96% coverage: 4:336/347 of query aligns to 6:360/386 of A2QAC0
- M70 (≠ S60) mutation to F: Abolishes enzyme activity.
- DI 213:214 (≠ DV 208:209) mutation to SR: Alters cofactor specificity from NAD to NADP; when associated with T-359.
- Y318 (≠ F294) mutation to F: Increases affinity for D-sorbitol.
- A359 (≠ K335) mutation to T: Alters cofactor specificity from NAD to NADP; when associated with 213-SR-214.
3gfbA L-threonine dehydrogenase (tktdh) from the hyperthermophilic archaeon thermococcus kodakaraensis (see paper)
26% identity, 93% coverage: 25:345/347 of query aligns to 20:343/347 of 3gfbA
- active site: C40 (= C45), G41 (= G46), T42 (≠ S47), H45 (= H50), H65 (= H70), E66 (= E71), C95 (≠ G100), C98 (≠ A103), C101 (≠ F106), C109 (≠ S114), K113 (≠ T118), P151 (= P161), A155 (= A165), K340 (= K342)
- binding nicotinamide-adenine-dinucleotide: G173 (= G184), G175 (= G186), P176 (= P187), L177 (≠ I188), S196 (≠ V207), E197 (≠ D208), P198 (≠ V209), R202 (≠ P213), F241 (≠ C245), S242 (≠ T246), A244 (≠ N248), L264 (= L268), G265 (= G269), L266 (= L270), I289 (vs. gap), T290 (vs. gap)
Q5JI69 L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see paper)
26% identity, 93% coverage: 25:345/347 of query aligns to 22:345/350 of Q5JI69
- L179 (≠ I188) binding NAD(+)
- E199 (≠ D208) binding NAD(+)
- R204 (≠ P213) binding NAD(+)
- LGL 266:268 (= LGL 268:270) binding NAD(+)
- IT 291:292 (vs. gap) binding NAD(+)
4ej6A Crystal structure of a putative zinc-binding dehydrogenase (target psi-012003) from sinorhizobium meliloti 1021
28% identity, 90% coverage: 15:327/347 of query aligns to 10:323/343 of 4ej6A
- active site: C40 (= C45), G41 (= G46), T42 (≠ S47), H45 (= H50), H61 (= H70), E62 (= E71), C91 (≠ G100), C94 (≠ A103), C97 (≠ F106), C105 (= C117), R109 (≠ G121), P147 (= P161), C151 (≠ A165)
- binding zinc ion: C91 (≠ G100), C94 (≠ A103), C97 (≠ F106), C105 (= C117)
Sites not aligning to the query:
4ejmA Crystal structure of a putative zinc-binding dehydrogenase (target psi-012003) from sinorhizobium meliloti 1021 bound to NADP
28% identity, 90% coverage: 15:327/347 of query aligns to 10:323/342 of 4ejmA
- active site: C40 (= C45), G41 (= G46), T42 (≠ S47), H45 (= H50), H61 (= H70), E62 (= E71), C91 (≠ G100), C94 (≠ A103), C97 (≠ F106), C105 (≠ S114), R109 (≠ T118), P147 (= P161), C151 (≠ A165)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G170 (= G184), G172 (= G186), V173 (≠ P187), I174 (= I188), T194 (≠ D208), R195 (≠ V209), Q196 (≠ H210), K199 (≠ P213), C240 (= C245), E245 (≠ R250), T246 (≠ G251), L263 (= L268), V265 (≠ L270), I291 (≠ F296)
- binding zinc ion: C91 (≠ G100), C94 (≠ A103), C97 (≠ F106), C105 (≠ S114)
Sites not aligning to the query:
P07913 L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Escherichia coli (strain K12) (see paper)
26% identity, 90% coverage: 36:347/347 of query aligns to 29:340/341 of P07913
- C38 (= C45) mutation to D: Shows only 1% of wild-type catalytic activity. This mutant can be stimulated to the wild-type activity level after incubation with Zn(+).; mutation to S: Loss of catalytic activity. This mutant cannot be stimulated to the wild-type activity level after incubation with Zn(+).
Query Sequence
>WP_047271515.1 NCBI__GCF_002893965.1:WP_047271515.1
MSFVLPETTLGVVAHAAGDLRVEHVALTAPTAEQAVIEIAYGGVCGSDLHYWTHGAAGES
ILKAPMLLGHEVVGTVVTAAADGTGPAVGTSVAVHPATPGGTAPRFPSDRPNLSPCCTYL
GSAAQYPHTEGAFVKYAVLPTRMLRELPEGLDLRTASVAEPASVAWHAVSRAGDVRGKKA
LVVGCGPIGALVVAVLRRAGAQSITAVDVHDLPLQIASTLGADRVLEATDAEAVAASDAD
VVVECTGNHRGLESAIRGATRGGRVVMLGLLPSGPQPVHISLAITRELELVGSFRFNDEI
DEVLLALADGSLAVDAVLTHEYPVEEALEAFAVAKDASVSGKVLLRF
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory