Comparing WP_048060884.1 NCBI__GCF_000008645.1:WP_048060884.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
6n2oC 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound (see paper)
29% identity, 91% coverage: 5:323/352 of query aligns to 201:548/572 of 6n2oC
Sites not aligning to the query:
6n2oA 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound (see paper)
29% identity, 91% coverage: 5:323/352 of query aligns to 201:548/572 of 6n2oA
Sites not aligning to the query:
6n2nA Crystal structure of 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus (see paper)
29% identity, 91% coverage: 5:323/352 of query aligns to 201:548/572 of 6n2nA
5b47A 2-oxoacid:ferredoxin oxidoreductase 2 from sulfolobus tokodai - pyruvate complex (see paper)
28% identity, 97% coverage: 6:346/352 of query aligns to 232:613/627 of 5b47A
5b46A 2-oxoacid:ferredoxin oxidoreductase 2 from sulfolobus tokodai - ligand free form (see paper)
28% identity, 97% coverage: 6:346/352 of query aligns to 232:613/627 of 5b46A
Q96XT2 2-oxoacid:ferredoxin oxidoreductase 2, subunit alpha; OFOR2; EC 1.2.7.11 from Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (Sulfolobus tokodaii) (see paper)
28% identity, 97% coverage: 6:346/352 of query aligns to 233:614/628 of Q96XT2
5b48A 2-oxoacid:ferredoxin oxidoreductase 1 from sulfolobus tokodai (see paper)
29% identity, 95% coverage: 8:342/352 of query aligns to 202:560/576 of 5b48A
P72578 2-oxoacid:ferredoxin oxidoreductase subunit alpha; OFOR; EC 1.2.7.11 from Sulfolobus sp. (see 2 papers)
28% identity, 95% coverage: 8:342/352 of query aligns to 234:608/632 of P72578
Q96Y66 2-oxoacid:ferredoxin oxidoreductase 1, subunit alpha; OFOR1; EC 1.2.7.11 from Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (Sulfolobus tokodaii) (see paper)
28% identity, 95% coverage: 8:342/352 of query aligns to 234:608/627 of Q96Y66
Sites not aligning to the query:
5exeA Crystal structure of oxalate oxidoreductase from moorella thermoacetica bound with carboxy-tpp adduct (see paper)
25% identity, 97% coverage: 6:347/352 of query aligns to 6:378/394 of 5exeA
5exdD Crystal structure of oxalate oxidoreductase from moorella thermoacetica bound with carboxy-di-oxido-methyl-tpp (coom-tpp) intermediate (see paper)
25% identity, 97% coverage: 6:347/352 of query aligns to 6:378/394 of 5exdD
5c4iA Structure of an oxalate oxidoreductase (see paper)
25% identity, 97% coverage: 6:347/352 of query aligns to 6:378/394 of 5c4iA
Q2RMD6 Pyruvate:ferredoxin oxidoreductase; PFOR; Pyruvate synthase; EC 1.2.7.1 from Moorella thermoacetica (strain ATCC 39073 / JCM 9320) (see paper)
30% identity, 48% coverage: 1:169/352 of query aligns to 1:170/1171 of Q2RMD6
Sites not aligning to the query:
>WP_048060884.1 NCBI__GCF_000008645.1:WP_048060884.1
MATQMVKGNTAVIIGAMYAGCDCYFGYPITPASEILHEASRYFPMVGRKFVQAESEEAAI
NMVYGAAAAGHRVMTASSGPGISLKQEGISFLAGAELPAVIVDVMRAGPGLGNIGPEQGD
YNQIVKGGGHGNYRNMVLAPSSVQEMCDLTMEAFELADKYRNPVVVLTDAVLGQMAEPLR
FPEEAVEHRPDTSWAVCGNRETMKNLVTSIFLDFDELEEFNFYLQEKYARIEENEVRYEE
YLVDDAEIVMVAYGISSRVARSAVETARAEGINVGLLRPITLFPFPSDRIRELADGGCRF
ISVEMSSGQMREDIRMASGCRDVELVNRMGGNLIELRDVLEKIREVAGDSSD
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory