SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_049991787.1 NCBI__GCF_000784335.1:WP_049991787.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
32% identity, 75% coverage: 70:285/288 of query aligns to 63:278/281 of P94530

query
sites
P94530
Y
 
Y
E
 
T
Y
 
F
L
 
L
L
 
F
T
 
N
N
 
G
-
 
G
S
 
S
L
 
I
I
 
Y
V
 
F
Q
 
K
W
 
W
T
 
F
V
 
F
N
 
N
T
 
S
V
 
L
I
 
V
L
 
L
A
 
G
G
 
L
V
 
F
T
 
T
T
 
T
I
 
V
V
 
L
V
 
T
M
 
L
L
 
F
I
 
F
D
 
S
A
 
S
M
 
M
I
 
I
A
 
G
Y
 
Y
S
 
G
L
 
L
T
 
A
R
 
V
L
 
Y
D
 
D
W
 
F
P
 
K
G
 
G
R
 
R
R
 
N
A
 
I
I
 
I
F
 
F
A
 
V
V
 
L
I
 
V
V
 
L
A
 
I
S
 
I
F
 
M
M
 
M
V
 
V
P
 
P
G
 
L
I
 
E
V
 
V
N
 
M
L
 
M
V
 
L
P
 
P
V
 
L
Y
 
F
I
 
K
I
 
L
V
 
T
S
 
V
E
 
G
L
 
L
G
 
H
L
 
L
V
 
I
N
 
D
S
 
S
V
 
Y
W
 
T
G
 
G
V
 
V
V
 
I
L
 
L
P
 
P
S
 
F
A
 
I
A
 
V
N
 
S
P
 
P
L
 
V
G
 
A
V
 
V
F
 
F
M
 
F
L
 
F
V
 
R
Q
 
Q
F
 
Y
F
 
A
K
 
L
D
 
G
I
 
L
P
 
P
E
 
R
E
 
D
L
 
L
E
 
L
E
 
D
A
 
S
A
 
A
R
 
R
L
 
M
D
|
D
G
 
G
F
 
C
S
 
T
R
 
E
L
 
F
R
 
G
V
 
I
F
 
F
S
 
F
H
 
R
I
 
I
V
 
M
L
 
A
P
 
P
L
 
L
M
 
M
R
 
K
S
 
P
A
 
A
L
 
F
A
 
G
A
 
A
L
 
M
G
 
I
L
 
I
F
 
L
I
 
Q
F
 
S
I
 
L
W
 
N
T
 
S
W
 
W
N
 
N
A
 
N
F
 
F
V
 
L
W
 
W
P
 
P
L
 
L
L
 
I
I
 
V
F
 
L
Q
 
R
D
 
S
D
 
K
A
 
E
M
 
M
Y
 
F
T
 
T
L
 
L
P
 
P
I
 
I
G
 
G
L
 
L
V
 
S
T
 
S
L
 
L
Q
 
L
D
 
S
N
 
P
L
 
Y
G
 
G
V
 
-
T
 
N
E
 
N
P
 
Y
G
 
D
V
 
M
I
 
L
M
 
I
T
 
S
S
 
G
A
 
S
V
 
V
V
 
F
A
 
A
S
 
I
V
 
L
P
 
P
L
 
V
L
 
I
L
 
I
V
 
I
F
 
F
L
 
L
V
 
F
M
 
F
Q
 
Q
K
 
K
H
 
Y
L
 
F
V
 
I
R
 
S
A
 
G
V
 
L
E
 
T
M
 
V
Q
 
G
G
 
G

P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
28% identity, 71% coverage: 82:285/288 of query aligns to 84:293/296 of P68183

query
sites
P68183
W
 
W
T
 
L
V
 
W
N
 
N
T
 
S
V
 
V
I
 
K
L
 
V
A
 
A
G
 
G
V
 
I
T
 
S
T
 
A
I
 
I
V
 
G
V
 
I
M
 
V
L
 
A
I
 
L
D
 
S
A
 
T
M
 
T
I
 
C
A
 
A
Y
 
Y
S
 
A
L
 
F
T
 
A
R
 
R
L
 
M
D
 
R
W
 
F
P
 
P
G
 
G
R
 
K
R
 
A
A
 
T
I
 
L
F
 
L
A
 
K
V
 
G
I
 
M
V
 
L
A
 
I
S
 
F
F
 
Q
M
 
M
V
 
F
P
 
P
G
 
A
I
 
V
V
 
L
N
 
S
L
 
L
V
 
V
P
 
A
V
 
L
Y
 
Y
I
 
A
I
 
L
V
 
F
S
 
D
E
 
R
L
 
L
G
 
G
L
 
E
-
 
Y
-
 
I
-
 
P
-
 
F
-
 
I
-
 
G
V
 
L
N
 
N
S
 
T
V
 
H
W
 
G
G
 
G
V
 
V
V
 
I
L
 
F
P
 
A
S
 
Y
A
 
L
A
 
G
N
 
G
-
 
I
P
 
A
L
 
L
G
 
H
V
 
V
F
 
W
M
 
T
L
 
I
V
 
K
Q
 
G
F
 
Y
F
 
F
K
 
E
D
 
T
I
 
I
P
 
D
E
 
S
E
 
S
L
 
L
E
 
E
E
|
E
A
 
A
A
|
A
R
 
A
L
 
L
D
 
D
G
|
G
F
 
A
S
 
T
R
 
P
L
 
W
R
 
Q
V
 
A
F
 
F
S
 
R
H
 
L
I
 
V
V
 
L
L
 
L
P
|
P
L
 
L
M
 
S
R
 
V
S
 
P
A
 
I
L
 
L
A
 
A
A
 
V
L
 
V
G
 
F
L
 
I
F
 
L
I
 
S
F
 
F
I
 
I
W
 
A
T
 
A
W
 
I
N
 
T
A
 
E
F
 
V
V
 
P
W
 
V
P
 
A
L
 
S
L
 
L
I
 
L
F
 
L
Q
 
R
D
 
D
D
 
V
A
 
N
M
 
S
Y
 
Y
T
 
T
L
 
L
P
 
A
I
 
V
G
 
G
L
 
-
V
 
-
T
 
-
L
 
M
Q
 
Q
D
 
Q
N
 
Y
L
 
L
G
 
N
V
 
P
T
 
Q
E
 
N
P
 
Y
-
 
L
-
 
W
G
 
G
V
 
D
I
 
F
M
 
A
T
 
A
S
 
A
A
 
A
V
 
V
V
 
M
A
 
S
S
 
A
V
 
L
P
 
P
L
 
I
L
 
T
L
 
I
V
 
V
F
 
F
L
 
L
V
 
L
M
 
A
Q
 
Q
K
 
R
H
 
W
L
 
L
V
 
V
R
 
N
A
 
G
V
 
L
E
 
T
M
 
A
Q
 
G
G
 
G

Query Sequence

>WP_049991787.1 NCBI__GCF_000784335.1:WP_049991787.1
MSTDSQRLFDGVSLTSDRLRTIGLYAGLYGTALLFLLPYWYMFATSFMTRDLVYSEVPHL
IPWDLTLYWYEYLLTNSLIVQWTVNTVILAGVTTIVVMLIDAMIAYSLTRLDWPGRRAIF
AVIVASFMVPGIVNLVPVYIIVSELGLVNSVWGVVLPSAANPLGVFMLVQFFKDIPEELE
EAARLDGFSRLRVFSHIVLPLMRSALAALGLFIFIWTWNAFVWPLLIFQDDAMYTLPIGL
VTLQDNLGVTEPGVIMTSAVVASVPLLLVFLVMQKHLVRAVEMQGTTK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory