SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_050463180.1 NCBI__GCF_001189915.1:WP_050463180.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

6sulA Amicoumacin kinase amin in complex with amp-pnp, mg2+ and ami (see paper)
23% identity, 60% coverage: 35:226/318 of query aligns to 36:234/334 of 6sulA

query
sites
6sulA
E
|
E
N
|
N
S
 
Y
N
x
V
F
 
Y
F
 
E
I
 
L
T
 
K
T
 
K
D
 
D
S
 
G
G
 
E
E
 
S
Y
 
F
V
x
I
L
 
L
T
x
K
L
 
I
F
 
T
E
 
H
K
 
-
L
 
-
T
 
T
F
 
I
E
 
R
Q
 
R
L
 
S
P
 
P
F
 
D
Y
 
Y
-
 
I
-
 
L
-
 
G
-
 
E
L
 
M
E
 
E
L
 
W
M
 
L
R
 
H
H
 
H
L
 
L
A
 
A
Q
 
K
R
 
G
G
 
G
V
 
L
L
 
S
V
 
V
P
 
A
A
 
K
P
 
P
V
 
I
A
 
A
N
 
S
Q
 
L
Q
 
N
G
 
G
S
 
R
I
 
D
I
 
I
N
 
E
A
 
Q
L
 
V
N
 
D
-
 
D
G
 
G
K
 
Q
P
 
G
A
 
G
S
 
S
I
 
F
V
 
L
T
 
L
K
 
R
L
 
V
E
 
-
G
 
-
E
 
-
S
 
-
Q
 
-
L
 
Y
S
 
E
P
x
K
T
x
A
P
 
P
V
 
G
H
 
H
C
x
K
A
 
V
E
 
E
-
 
E
-
 
A
-
 
D
-
 
W
-
 
N
-
 
D
-
 
E
-
 
L
-
 
F
-
 
Y
-
 
A
V
 
L
G
 
G
A
 
Q
M
 
Y
L
 
T
A
 
G
H
 
R
M
 
M
H
 
H
L
 
K
A
 
L
A
 
T
Q
 
K
D
 
S
F
 
Y
T
 
Q
I
 
L
R
 
S
Q
 
D
P
 
P
N
 
R
L
 
Y
R
 
K
G
 
R
L
 
Q
S
 
E
W
 
W
W
 
D
R
 
E
E
|
E
T
 
E
T
x
Q
P
 
L
V
 
K
V
 
L
L
 
R
P
 
K
Y
 
Y
L
 
V
P
 
P
A
 
A
D
 
D
T
 
Q
Q
 
T
D
 
-
L
 
-
L
 
-
R
 
-
T
 
-
E
 
-
M
 
L
Q
 
V
F
 
F
Q
 
E
E
 
Q
T
 
A
F
 
D
A
 
R
A
 
L
S
 
M
A
 
E
T
 
K
Y
 
L
A
 
A
Q
 
K
L
 
L
P
 
P
N
 
K
-
 
N
-
 
Q
-
 
D
-
 
T
-
 
Y
G
 
G
P
 
L
V
 
V
H
 
H
A
 
A
D
|
D
L
 
L
F
x
H
R
x
H
N
x
G
N
|
N
A
 
F
M
 
H
F
 
W
V
 
D
D
 
Q
T
 
G
R
 
K
L
 
I
T
 
T
G
 
T
F
 
-
F
|
F
D
|
D
F
 
F
Y
 
D
F
x
D
A
 
I
G
 
G
C
 
Y
D
 
N
T
 
W
W
 
F
L
 
M
F
 
N
D
 
D
L
 
I
A
 
S
V
 
I

Sites not aligning to the query:

6sunA Amicoumacin kinase hamin in complex with amp-pnp, ca2+ and ami (see paper)
21% identity, 51% coverage: 65:226/318 of query aligns to 69:235/334 of 6sunA

query
sites
6sunA
L
 
M
E
 
D
L
 
W
M
 
I
R
 
R
H
 
Y
L
 
L
A
 
S
Q
 
Q
R
 
H
G
 
G
V
 
I
L
 
S
V
 
V
P
 
A
A
 
K
P
 
P
V
 
V
A
 
L
N
 
S
Q
 
A
Q
 
R
G
 
G
S
 
K
I
 
D
I
 
V
N
 
E
A
 
A
L
 
I
-
 
P
-
 
D
-
 
Q
-
 
A
-
 
G
-
 
G
-
 
A
-
 
F
-
 
L
-
 
L
-
 
R
-
 
V
-
 
Y
N
 
E
G
x
K
K
x
A
P
 
P
A
 
G
S
 
R
I
x
K
V
 
V
T
 
T
K
 
E
L
 
A
E
 
D
G
 
W
E
 
N
S
 
G
Q
 
Q
L
 
L
S
 
F
P
 
Q
T
 
A
P
 
-
V
 
-
H
 
-
C
 
-
A
 
-
E
 
-
V
 
L
G
 
G
A
 
A
M
 
Y
L
 
T
A
 
G
H
 
R
M
 
M
H
 
H
L
 
Q
A
 
T
A
 
T
Q
 
K
D
 
Q
F
 
Y
T
 
Q
I
 
V
R
 
K
Q
 
D
P
 
P
N
 
R
L
 
Y
R
 
K
G
 
R
L
 
Q
S
 
E
W
 
W
W
 
Y
R
 
E
E
|
E
T
 
E
T
x
Q
P
 
L
V
 
K
V
 
L
L
 
E
P
 
T
Y
 
Y
L
 
I
P
 
P
A
 
S
D
 
D
T
 
Q
Q
 
T
D
 
V
L
 
V
L
 
L
R
 
Q
T
 
R
E
 
K
M
 
D
Q
 
E
F
 
L
Q
 
M
E
 
Q
T
 
K
F
 
L
A
 
-
A
 
H
S
 
Q
A
 
L
T
 
R
Y
 
I
A
 
S
Q
 
K
L
 
D
P
 
V
N
 
Y
G
 
G
P
 
L
V
 
V
H
 
H
A
 
A
D
|
D
L
 
L
F
x
H
R
x
H
N
x
G
N
|
N
A
 
F
M
 
H
F
 
Y
V
 
H
D
 
Q
T
 
G
R
 
E
L
 
I
T
 
I
G
 
A
F
 
-
F
|
F
D
|
D
F
 
F
Y
x
D
F
x
D
A
 
C
G
 
G
C
 
Y
D
 
H
T
 
W
W
 
F
L
 
I
F
 
N
D
 
D
L
 
I
A
 
S
V
 
I

Sites not aligning to the query:

6sumA Amicoumacin kinase hamin in complex with amp-pnp, mg2+ and ami (see paper)
21% identity, 51% coverage: 65:226/318 of query aligns to 69:235/335 of 6sumA

query
sites
6sumA
L
 
M
E
 
D
L
 
W
M
 
I
R
 
R
H
 
Y
L
 
L
A
 
S
Q
 
Q
R
 
H
G
 
G
V
 
I
L
 
S
V
 
V
P
 
A
A
 
K
P
 
P
V
 
V
A
 
L
N
 
S
Q
 
A
Q
 
R
G
 
G
S
 
K
I
 
D
I
 
V
N
 
E
A
 
A
L
 
I
-
 
P
-
 
D
-
 
Q
-
 
A
-
 
G
-
 
G
-
 
A
-
 
F
-
 
L
-
 
L
-
 
R
-
 
V
-
 
Y
N
 
E
G
x
K
K
x
A
P
 
P
A
 
G
S
 
R
I
x
K
V
 
V
T
 
T
K
 
E
L
 
A
E
 
D
G
 
W
E
 
N
S
 
G
Q
 
Q
L
 
L
S
 
F
P
 
Q
T
 
A
P
 
-
V
 
-
H
 
-
C
 
-
A
 
-
E
 
-
V
 
L
G
 
G
A
 
A
M
 
Y
L
 
T
A
 
G
H
 
R
M
 
M
H
 
H
L
 
Q
A
 
T
A
 
T
Q
 
K
D
 
Q
F
 
Y
T
 
Q
I
 
V
R
 
K
Q
 
D
P
 
P
N
 
R
L
 
Y
R
 
K
G
 
R
L
 
Q
S
 
E
W
 
W
W
 
Y
R
 
E
E
|
E
T
 
E
T
x
Q
P
 
L
V
 
K
V
 
L
L
 
E
P
 
T
Y
 
Y
L
 
I
P
 
P
A
 
S
D
 
D
T
 
Q
Q
 
T
D
 
V
L
 
V
L
 
L
R
 
Q
T
 
R
E
 
K
M
 
D
Q
 
E
F
 
L
Q
 
M
E
 
Q
T
 
K
F
 
L
A
 
-
A
 
H
S
 
Q
A
 
L
T
 
R
Y
 
I
A
 
S
Q
 
K
L
 
D
P
 
V
N
 
Y
G
 
G
P
 
L
V
 
V
H
 
H
A
 
A
D
|
D
L
 
L
F
x
H
R
x
H
N
x
G
N
|
N
A
 
F
M
 
H
F
 
Y
V
 
H
D
 
Q
T
 
G
R
 
E
L
 
I
T
 
I
G
 
A
F
 
-
F
|
F
D
|
D
F
 
F
Y
 
D
F
x
D
A
 
C
G
 
G
C
 
Y
D
 
H
T
 
W
W
 
F
L
 
I
F
 
N
D
 
D
L
 
I
A
 
S
V
 
I

Sites not aligning to the query:

Query Sequence

>WP_050463180.1 NCBI__GCF_001189915.1:WP_050463180.1
MAVFTPVSLDDLSGWLTQFSLGKAQAIKGISSGIENSNFFITTDSGEYVLTLFEKLTFEQ
LPFYLELMRHLAQRGVLVPAPVANQQGSIINALNGKPASIVTKLEGESQLSPTPVHCAEV
GAMLAHMHLAAQDFTIRQPNLRGLSWWRETTPVVLPYLPADTQDLLRTEMQFQETFAASA
TYAQLPNGPVHADLFRNNAMFVDTRLTGFFDFYFAGCDTWLFDLAVTVNDWCIDVDSGAL
DFPRAQAMMDAYHAVRPFSAAEQQAWQPMLRAAALRFWISRLYDFYLPRDAEMLTPHDPG
HFERILRLRITHPVPALN

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory