Comparing WP_051180815.1 NCBI__GCF_000423825.1:WP_051180815.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 19 hits to proteins with known functional sites (download)
2wfxB Crystal structure of the complex between human hedgehog-interacting protein hip and sonic hedgehog in the presence of calcium (see paper)
35% identity, 94% coverage: 16:348/354 of query aligns to 8:336/417 of 2wfxB
Sites not aligning to the query:
7pgnB Hhp-c in complex with glycosaminoglycan mimic sos (see paper)
33% identity, 95% coverage: 16:351/354 of query aligns to 9:345/438 of 7pgnB
7pgnA Hhp-c in complex with glycosaminoglycan mimic sos (see paper)
33% identity, 94% coverage: 16:348/354 of query aligns to 10:349/437 of 7pgnA
7pgmB Hhip-c in complex with heparin (see paper)
33% identity, 95% coverage: 16:351/354 of query aligns to 9:334/427 of 7pgmB
Q96QV1 Hedgehog-interacting protein; HHIP; HIP from Homo sapiens (Human) (see 3 papers)
33% identity, 94% coverage: 19:351/354 of query aligns to 225:577/700 of Q96QV1
3a9hA Crystal structure of pqq-dependent sugar dehydrogenase holo-form (see paper)
34% identity, 76% coverage: 32:300/354 of query aligns to 23:267/338 of 3a9hA
Sites not aligning to the query:
3a9gA Crystal structure of pqq-dependent sugar dehydrogenase apo-form (see paper)
34% identity, 76% coverage: 32:300/354 of query aligns to 23:267/338 of 3a9gA
P75804 Aldose sugar dehydrogenase YliI; Asd; Soluble aldose sugar dehydrogenase YliI; EC 1.1.5.- from Escherichia coli (strain K12) (see paper)
31% identity, 77% coverage: 20:291/354 of query aligns to 34:302/371 of P75804
2ismB Crystal structure of the putative oxidoreductase (glucose dehydrogenase) (ttha0570) from thermus theromophilus hb8
34% identity, 66% coverage: 19:253/354 of query aligns to 10:236/333 of 2ismB
2g8sA Crystal structure of the soluble aldose sugar dehydrogenase (asd) from escherichia coli in the apo-form (see paper)
31% identity, 77% coverage: 20:291/354 of query aligns to 12:280/348 of 2g8sA
3dasA Structure of the pqq-bound form of aldose sugar dehydrogenase (adh) from streptomyces coelicolor
35% identity, 60% coverage: 65:278/354 of query aligns to 61:253/334 of 3dasA
Sites not aligning to the query:
7cdyA Crystal structure of glucose dehydrogenase
30% identity, 73% coverage: 36:292/354 of query aligns to 25:279/346 of 7cdyA
7cgzA Glucose dehydrogenase
31% identity, 60% coverage: 36:248/354 of query aligns to 25:240/321 of 7cgzA
1cq1A Soluble quinoprotein glucose dehydrogenase from acinetobacter calcoaceticus in complex with pqqh2 and glucose (see paper)
29% identity, 51% coverage: 67:248/354 of query aligns to 73:264/444 of 1cq1A
Sites not aligning to the query:
1c9uA Crystal structure of the soluble quinoprotein glucose dehydrogenase in complex with pqq (see paper)
29% identity, 51% coverage: 67:248/354 of query aligns to 73:264/444 of 1c9uA
Sites not aligning to the query:
5minB Apo form of the soluble pqq-dependent glucose dehydrogenase from acinetobacter calcoaceticus
29% identity, 51% coverage: 67:248/354 of query aligns to 73:270/453 of 5minB
Sites not aligning to the query:
P13650 Quinoprotein glucose dehydrogenase B; Glucose dehydrogenase B [pyrroloquinoline-quinone]; Soluble glucose dehydrogenase; s-GDH; EC 1.1.5.2 from Acinetobacter calcoaceticus (see paper)
29% identity, 51% coverage: 67:248/354 of query aligns to 97:294/478 of P13650
Sites not aligning to the query:
1cruA Soluble quinoprotein glucose dehydrogenase from acinetobacter calcoaceticus in complex with pqq and methylhydrazine (see paper)
30% identity, 51% coverage: 67:248/354 of query aligns to 73:268/448 of 1cruA
Sites not aligning to the query:
8re0A Quinoprotein glucose dehydrogenase B (see paper)
29% identity, 51% coverage: 67:248/354 of query aligns to 73:270/452 of 8re0A
Sites not aligning to the query:
>WP_051180815.1 NCBI__GCF_000423825.1:WP_051180815.1
MAAAQETPRLGLEAVATRGLQSPVYVTHAGDGSGRLFILEQPGRIRIVQQGRLLPTPFLD
ITKQVRAGGEQGLLGLAFHPKYRQNGRYFINYTRAPDGATVVAEYRVSDEANVSATEERR
LLVVPQPYPNHNGGMIEFGPDGFLYIALGDGGAGGDPGNRAQNRRELLGKLLRIDVDRGK
PYGIPADNPFARGGGRAEIFAYGLRNPWRFSFDRKTGQLWAADVGQDAWEEIDVIKRGGN
YGWRIMEGKHCFPPRRGCSQAGLQLPVAEYGHEKGRCSITGGYVYRGSRVPALTGIYLYA
DYCSGEIFGLRDGRQRVLLPTKLRITSFGQDEQGEVYVVGHEGTVHRLSGGASR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory