Comparing WP_051305559.1 NCBI__GCF_000429965.1:WP_051305559.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 19 hits to proteins with known functional sites (download)
2wqdA Crystal structure of enzyme i of the phosphoenolpyruvate:sugar phosphotransferase system in the dephosphorylated state (see paper)
38% identity, 96% coverage: 15:592/600 of query aligns to 1:569/570 of 2wqdA
P23533 Phosphoenolpyruvate-protein phosphotransferase; Phosphotransferase system, enzyme I; EC 2.7.3.9 from Staphylococcus carnosus (strain TM300) (see paper)
41% identity, 88% coverage: 55:581/600 of query aligns to 40:562/573 of P23533
P08839 Phosphoenolpyruvate-protein phosphotransferase; Phosphotransferase system, enzyme I; EC 2.7.3.9 from Escherichia coli (strain K12) (see 2 papers)
34% identity, 97% coverage: 17:597/600 of query aligns to 1:573/575 of P08839
2hwgA Structure of phosphorylated enzyme i of the phosphoenolpyruvate:sugar phosphotransferase system (see paper)
34% identity, 97% coverage: 18:597/600 of query aligns to 1:572/572 of 2hwgA
2xz7A Crystal structure of the phosphoenolpyruvate-binding domain of enzyme i in complex with phosphoenolpyruvate from the thermoanaerobacter tengcongensis pep-sugar phosphotransferase system (pts) (see paper)
42% identity, 54% coverage: 268:590/600 of query aligns to 5:322/324 of 2xz7A
2xz9A Crystal structure from the phosphoenolpyruvate-binding domain of enzyme i in complex with pyruvate from the thermoanaerobacter tengcongensis pep-sugar phosphotransferase system (pts) (see paper)
42% identity, 53% coverage: 274:590/600 of query aligns to 4:315/317 of 2xz9A
1kc7A Pyruvate phosphate dikinase with bound mg-phosphonopyruvate (see paper)
26% identity, 64% coverage: 169:551/600 of query aligns to 421:859/872 of 1kc7A
Sites not aligning to the query:
P22983 Pyruvate, phosphate dikinase; Pyruvate, orthophosphate dikinase; EC 2.7.9.1 from Clostridium symbiosum (Bacteroides symbiosus) (see 4 papers)
26% identity, 64% coverage: 169:551/600 of query aligns to 422:860/874 of P22983
Sites not aligning to the query:
5lu4A C4-type pyruvate phosphate dikinase: conformational intermediate of central domain in the swiveling mechanism (see paper)
27% identity, 64% coverage: 172:556/600 of query aligns to 426:845/850 of 5lu4A
Sites not aligning to the query:
O23404 Pyruvate, phosphate dikinase 1, chloroplastic; Pyruvate, orthophosphate dikinase 1; EC 2.7.9.1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
27% identity, 64% coverage: 171:556/600 of query aligns to 514:955/963 of O23404
5jvjB C4-type pyruvate phosphate dikinase: different conformational states of the nucleotide binding domain in the dimer (see paper)
27% identity, 64% coverage: 172:556/600 of query aligns to 353:790/797 of 5jvjB
Sites not aligning to the query:
Q39735 Pyruvate, phosphate dikinase, chloroplastic; Cold-sensitive pyruvate, orthophosphate dikinase; Pyruvate, orthophosphate dikinase; EC 2.7.9.1 from Flaveria bidentis (Coastal plain yellowtops) (Ethulia bidentis) (see 2 papers)
25% identity, 84% coverage: 54:556/600 of query aligns to 369:946/953 of Q39735
Sites not aligning to the query:
5jvlA C4-type pyruvate phospate dikinase: nucleotide binding domain with bound atp analogue (see paper)
27% identity, 64% coverage: 172:556/600 of query aligns to 426:867/874 of 5jvlA
Sites not aligning to the query:
1vbgA Pyruvate phosphate dikinase from maize (see paper)
27% identity, 64% coverage: 172:556/600 of query aligns to 426:867/874 of 1vbgA
Sites not aligning to the query:
P11155 Pyruvate, phosphate dikinase 1, chloroplastic; Pyruvate, orthophosphate dikinase 1; EC 2.7.9.1 from Zea mays (Maize) (see 7 papers)
27% identity, 64% coverage: 172:556/600 of query aligns to 499:940/947 of P11155
Sites not aligning to the query:
5jvlB C4-type pyruvate phospate dikinase: nucleotide binding domain with bound atp analogue (see paper)
26% identity, 63% coverage: 178:556/600 of query aligns to 104:513/520 of 5jvlB
Sites not aligning to the query:
Q02KR1 Phosphoenolpyruvate synthase; PEP synthase; Pyruvate, water dikinase; EC 2.7.9.2 from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
26% identity, 59% coverage: 194:547/600 of query aligns to 408:774/791 of Q02KR1
1vbhA Pyruvate phosphate dikinase with bound mg-pep from maize (see paper)
26% identity, 64% coverage: 172:556/600 of query aligns to 417:855/862 of 1vbhA
Sites not aligning to the query:
P37349 PEP-dependent dihydroxyacetone kinase, phosphoryl donor subunit DhaM; Dihydroxyacetone kinase subunit M; EC 2.7.1.121 from Escherichia coli (strain K12) (see paper)
26% identity, 27% coverage: 52:214/600 of query aligns to 278:440/472 of P37349
Sites not aligning to the query:
>WP_051305559.1 NCBI__GCF_000429965.1:WP_051305559.1
MKKQQYSAGKEPACSTLLQGIGVSAGIVVGRVVVIKRQTCRAGWYQLPPEFIQEEVARFQ
QAVTTAEQELRQLRENLADDLADSLSIIDSHILMLKDRMIYDQTVEIIRLKNVNAEWALA
QALTKVKQRFDTIADPYIKERYADVKHVADRVFGILFGREPYQLVTGQEPVVVVANDFSP
EDTMQLHTENILGLLAERGGMTSHTSIVARSLNIPAVIGLTHITGSIATGDLVIIDGDAG
TVIVAPSPEQIKAYRRQALELNAGAGELAQYIPLSATTFDGYQVQLSANVEMTEELASVL
RFGSQGIGLFRSEFDFFHQSCHPDEAALYTTYRQLLETLAPHPVTVRTLDVGGDKFLDHL
PGHLSQLDPERNPALGLRSIRFSLYESELFSMQLRALLRASVHGRLRILFPLVSSLAELH
AVKAILRTIIGQLEEDGLDYEPQVELGVMVEVPSAVILADVFAKEVDFLAVGTNDLIQYS
LAIDRSNQHVAHMYDPFHPAVLRMIKQTIDAGHAQGIPVSVCGEMAGDILCATVLFGLGV
DELSMRPAVIPYIKRLLRHLRYDELQLLGQEILHCVDGRQVQNQLMAFLRQYYPEKVPQL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory