SitesBLAST
Comparing WP_052123206.1 NCBI__GCF_000769915.1:WP_052123206.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
4itbA Structure of bacterial enzyme in complex with cofactor and substrate (see paper)
46% identity, 99% coverage: 4:449/451 of query aligns to 4:452/453 of 4itbA
- active site: N130 (= N130), K153 (= K153), E227 (= E227), C261 (= C261), E358 (= E355), E435 (= E432)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: V126 (= V126), M127 (= M127), P128 (= P128), W129 (= W129), N130 (= N130), K153 (= K153), A155 (= A155), S156 (= S156), A186 (≠ G186), V189 (= V189), G205 (= G205), S206 (= S206), A209 (= A209), S212 (≠ T212), L228 (= L228), C261 (= C261), E358 (= E355), F360 (= F357)
- binding 4-oxobutanoic acid: E227 (= E227), C261 (= C261), S418 (= S415)
3vz3A Structural insights into substrate and cofactor selection by sp2771 (see paper)
45% identity, 99% coverage: 4:449/451 of query aligns to 4:452/453 of 3vz3A
- active site: N130 (= N130), K153 (= K153), E227 (= E227), A261 (≠ C261), E358 (= E355), E435 (= E432)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: V126 (= V126), M127 (= M127), W129 (= W129), N130 (= N130), Q135 (= Q135), R138 (= R138), K153 (= K153), A155 (= A155), S156 (= S156), A186 (≠ G186), V189 (= V189), T204 (= T204), G205 (= G205), S206 (= S206), A209 (= A209), E227 (= E227), L228 (= L228), G229 (= G229), A261 (≠ C261), F360 (= F357)
- binding 4-oxobutanoic acid: F131 (= F131), W134 (= W134), S260 (= S260), A261 (≠ C261), I262 (= I262), S418 (= S415)
3efvA Crystal structure of a putative succinate-semialdehyde dehydrogenase from salmonella typhimurium lt2 with bound NAD (see paper)
42% identity, 99% coverage: 3:448/451 of query aligns to 7:455/459 of 3efvA
- active site: N134 (= N130), E231 (= E227), C265 (= C261), E439 (= E432)
- binding nicotinamide-adenine-dinucleotide: I130 (≠ V126), M131 (= M127), P132 (= P128), W133 (= W129), N134 (= N130), Q139 (= Q135), R142 (= R138), K157 (= K153), A159 (= A155), N190 (≠ G186), V193 (= V189), T208 (= T204), G209 (= G205), S210 (= S206), A213 (= A209), E231 (= E227), L232 (= L228), G233 (= G229), C265 (= C261), E362 (= E355), F364 (= F357), F428 (= F421)
8qmrA Succinic semialdehyde dehydrogenase from e. Coli with bound NAD+ and succinic semialdehyde (see paper)
41% identity, 99% coverage: 3:448/451 of query aligns to 8:456/460 of 8qmrA
- binding nicotinamide-adenine-dinucleotide: I131 (≠ V126), M132 (= M127), P133 (= P128), W134 (= W129), K158 (= K153), N191 (≠ G186), V194 (= V189), G210 (= G205), S211 (= S206), R213 (≠ K208), A214 (= A209), I218 (≠ V213), G234 (= G229), C266 (= C261), R310 (= R305), E363 (= E355), F365 (= F357)
- binding 4-oxobutanoic acid: F136 (= F131), W139 (= W134), Q140 (= Q135), R143 (= R138), C266 (= C261), S423 (= S415)
8qmqA Succinic semialdehyde dehydrogenase from e. Coli with bound NAD+ (see paper)
41% identity, 99% coverage: 3:448/451 of query aligns to 8:456/460 of 8qmqA
- binding nicotinamide-adenine-dinucleotide: I131 (≠ V126), M132 (= M127), P133 (= P128), W134 (= W129), N135 (= N130), Q140 (= Q135), R143 (= R138), K158 (= K153), N191 (≠ G186), V194 (= V189), T209 (= T204), G210 (= G205), S211 (= S206), A214 (= A209), E232 (= E227), L233 (= L228), G234 (= G229), C266 (= C261), E363 (= E355), F365 (= F357)
4ywuA Structural insight into the substrate inhibition mechanism of NADP+- dependent succinic semialdehyde dehydrogenase from streptococcus pyogenes (see paper)
38% identity, 99% coverage: 4:449/451 of query aligns to 4:453/455 of 4ywuA
- active site: N131 (= N130), K154 (= K153), E228 (= E227), C262 (= C261), E359 (= E355), E436 (= E432)
- binding 4-oxobutanoic acid: N131 (= N130), Q136 (= Q135), R139 (= R138), E228 (= E227), V261 (≠ S260), C262 (= C261), F425 (= F421)
4ohtA Crystal structure of succinic semialdehyde dehydrogenase from streptococcus pyogenes in complex with NADP+ as the cofactor (see paper)
38% identity, 99% coverage: 4:449/451 of query aligns to 4:453/455 of 4ohtA
- active site: N131 (= N130), K154 (= K153), E228 (= E227), C262 (= C261), E359 (= E355), E436 (= E432)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: V127 (= V126), E128 (≠ M127), P129 (= P128), W130 (= W129), K154 (= K153), H155 (= H154), A156 (= A155), S157 (= S156), Y187 (≠ G186), S207 (= S206), I214 (≠ V213)
P51649 Succinate-semialdehyde dehydrogenase, mitochondrial; Aldehyde dehydrogenase family 5 member A1; NAD(+)-dependent succinic semialdehyde dehydrogenase; EC 1.2.1.24 from Homo sapiens (Human) (see 5 papers)
37% identity, 92% coverage: 35:447/451 of query aligns to 109:530/535 of P51649
- G176 (≠ Q102) to R: in SSADHD; <1% of activity; dbSNP:rs72552281
- H180 (≠ S107) to Y: 83% of activity; dbSNP:rs2760118
- P182 (≠ D109) to L: 48% of activity; dbSNP:rs3765310
- R213 (= R138) binding substrate; mutation to A: Reduces catalytic activity to less than 15% of wild-type.
- C223 (≠ N148) to Y: in SSADHD; 5% of activity; dbSNP:rs72552282
- KPAE 228:231 (≠ KHAS 153:156) binding NAD(+)
- T233 (≠ V158) to M: in SSADHD; 4% of activity; dbSNP:rs1326526453
- A237 (= A162) to S: 65% of activity; dbSNP:rs62621664
- N255 (≠ Q180) to S: in SSADHD; 17% of activity; dbSNP:rs145087265
- G268 (≠ I193) to E: in SSADHD; <1% of activity; dbSNP:rs375628463
- GSTTTG 284:289 (≠ GSEKAG 205:210) binding NAD(+)
- R334 (≠ Q255) binding substrate; mutation to A: Reduces catalytic activity to less than 15% of wild-type.
- N335 (= N256) to K: in SSADHD; 1% of activity; dbSNP:rs72552283
- C340 (= C261) modified: Disulfide link with 342, In inhibited form
- C342 (≠ A263) modified: Disulfide link with 340, In inhibited form; mutation to A: Loss of regulation by redox state.
- N372 (= N292) natural variant: N -> S
- P382 (= P302) to L: in SSADHD; 2% of activity
- V406 (= V326) to I: in dbSNP:rs143741652
- G409 (= G329) to D: in SSADHD; <1% of activity; dbSNP:rs118203984
- S498 (= S415) binding substrate; mutation to A: Reduces catalytic activity to less than 15% of wild-type.
Sites not aligning to the query:
- 36 G → R: no effect on succinate-semialdehyde dehydrogenase activity; dbSNP:rs4646832
- 93 C → F: in SSADHD; 3% of activity; dbSNP:rs765561257
- 533 G → R: in SSADHD; <1% of activity; dbSNP:rs72552284
6j76A Structure of 3,6-anhydro-l-galactose dehydrogenase in complex with nap (see paper)
33% identity, 94% coverage: 26:449/451 of query aligns to 43:475/477 of 6j76A
- active site: N148 (= N130), E246 (= E227), C280 (= C261), E458 (= E432)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: I144 (≠ V126), T145 (≠ M127), A146 (≠ P128), W147 (= W129), N148 (= N130), K171 (= K153), T173 (≠ A155), S174 (= S156), G204 (= G186), G208 (≠ K190), T223 (= T204), G224 (= G205), S225 (= S206), A228 (= A209), S231 (≠ T212), I232 (≠ V213), E246 (= E227), L247 (= L228), C280 (= C261), E381 (= E355), F383 (= F357), H447 (≠ F421)
P25526 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD; SSDH; Glutarate-semialdehyde dehydrogenase; EC 1.2.1.79; EC 1.2.1.- from Escherichia coli (strain K12) (see paper)
32% identity, 99% coverage: 5:450/451 of query aligns to 31:481/482 of P25526
3jz4A Crystal structure of e. Coli NADP dependent enzyme (see paper)
32% identity, 99% coverage: 5:450/451 of query aligns to 30:480/481 of 3jz4A
- active site: N156 (= N130), K179 (= K153), E254 (= E227), C288 (= C261), E385 (= E355), E462 (= E432)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: P154 (= P128), W155 (= W129), K179 (= K153), A181 (= A155), S182 (= S156), A212 (≠ G186), G216 (≠ K190), G232 (= G205), S233 (= S206), I236 (≠ A209), C288 (= C261), K338 (≠ D311), E385 (= E355), F387 (= F357)
2w8rA The crystal structure of human ssadh in complex with NAD+ (see paper)
37% identity, 92% coverage: 35:447/451 of query aligns to 59:480/485 of 2w8rA
2w8qA The crystal structure of human ssadh in complex with ssa. (see paper)
37% identity, 92% coverage: 35:447/451 of query aligns to 59:480/485 of 2w8qA
8hapB Crystal structure of thermostable acetaldehyde dehydrogenase from hyperthermophilic archaeon sulfolobus tokodaii (see paper)
33% identity, 98% coverage: 6:449/451 of query aligns to 7:463/466 of 8hapB
- binding 2'-monophosphoadenosine-5'-diphosphate: I136 (≠ V126), L137 (≠ M127), F139 (≠ W129), K163 (= K153), S165 (≠ A155), I166 (≠ S156), S196 (≠ G186), G200 (≠ K190), G216 (= G205), S217 (= S206), T220 (≠ A209), I224 (≠ V213)
8hapA Crystal structure of thermostable acetaldehyde dehydrogenase from hyperthermophilic archaeon sulfolobus tokodaii (see paper)
33% identity, 98% coverage: 6:449/451 of query aligns to 7:463/466 of 8hapA
- binding [(2r,3r,4r,5r)-5-(6-amino-9h-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]methyl [(2r,3s,4s)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate: I136 (≠ V126), L137 (≠ M127), F139 (≠ W129), K163 (= K153), S165 (≠ A155), I166 (≠ S156), S196 (≠ G186), G200 (≠ K190), G216 (= G205), S217 (= S206), T220 (≠ A209), I224 (≠ V213), L239 (= L228), C272 (= C261), E368 (= E355), F370 (= F357)
8of1A Structure of aldh5f1 from moss physcomitrium patens in complex with NAD+ in the contracted conformation
33% identity, 99% coverage: 6:450/451 of query aligns to 49:498/505 of 8of1A
- binding nicotinamide-adenine-dinucleotide: I170 (≠ V126), A171 (≠ M127), P172 (= P128), W173 (= W129), K197 (= K153), A230 (≠ G186), F248 (≠ L203), G250 (= G205), S251 (= S206), V254 (≠ A209), M257 (≠ T212), L273 (= L228), C306 (= C261), K356 (≠ D311), E403 (= E355), F405 (= F357)
3rhdA Crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn from methanocaldococcus jannaschii dsm 2661 complexed with NADP
36% identity, 99% coverage: 6:451/451 of query aligns to 10:456/456 of 3rhdA
- active site: N133 (= N130), H156 (= H154), E233 (= E227), C267 (= C261), E360 (= E355), E437 (= E432)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: I129 (≠ V126), T130 (≠ M127), F132 (≠ W129), H156 (= H154), S158 (= S156), S159 (≠ N157), K160 (≠ V158), G193 (= G186), E194 (≠ S187), G197 (≠ K190), D198 (≠ N191), F211 (≠ L203), S214 (= S206), V217 (≠ A209)
6tgwA Crystal structure of human aldehyde dehydrogenase 1a3 in complex with a selective inhibitor (see paper)
34% identity, 99% coverage: 4:449/451 of query aligns to 25:476/478 of 6tgwA
- active site: N155 (= N130), E254 (= E227), C288 (= C261), E459 (= E432)
- binding methyl 5-(1,3-benzodioxol-5-yl)-2-phenyl-pyrazolo[1,5-a]pyrimidine-7-carboxylate: I106 (≠ A81), G110 (≠ K85), F156 (= F131), Q278 (≠ T251), F282 (≠ Q255), L442 (≠ S415), A444 (≠ P417)
- binding nicotinamide-adenine-dinucleotide: I151 (≠ V126), T152 (≠ M127), P153 (= P128), W154 (= W129), K178 (= K153), G211 (= G186), G215 (≠ K190), F229 (≠ L203), G231 (= G205), S232 (= S206), V235 (≠ A209)
6te5B Crystal structure of human aldehyde dehydrogenase 1a3 in complex with lq43 inhibitor compound (see paper)
34% identity, 99% coverage: 4:449/451 of query aligns to 27:476/479 of 6te5B
- active site: N157 (= N130), E256 (= E227), C290 (= C261), E459 (= E432)
- binding 6-(3,5-dimethoxyphenyl)-2-(4-methoxyphenyl)imidazo[1,2-a]pyridine: E111 (≠ K84), G112 (≠ K85), T116 (≠ L89), L442 (≠ S415), A444 (≠ P417)
- binding nicotinamide-adenine-dinucleotide: I153 (≠ V126), T154 (≠ M127), W156 (= W129), K180 (= K153), E183 (≠ S156), G213 (= G186), F231 (≠ L203), S234 (= S206), V237 (≠ A209), Q337 (≠ L308), K340 (≠ D311)
6tryA Crystal structure of human aldehyde dehydrogenase 1a3 in complex with mf13 inhibitor compound (see paper)
34% identity, 99% coverage: 4:449/451 of query aligns to 26:475/478 of 6tryA
- active site: N156 (= N130), E255 (= E227), C289 (= C261), E458 (= E432)
- binding nicotinamide-adenine-dinucleotide: I152 (≠ V126), T153 (≠ M127), W155 (= W129), K179 (= K153), A181 (= A155), E182 (≠ S156), G212 (= G186), G216 (≠ K190), A217 (≠ N191), F230 (≠ L203), G232 (= G205), S233 (= S206), V236 (≠ A209), K335 (≠ D307)
- binding 8-(4-chlorophenyl)-2-phenyl-imidazo[1,2-a]pyridine: I107 (≠ A81), G111 (≠ K85), T115 (≠ L89), L160 (≠ W134), C288 (≠ S260), L441 (≠ S415), A443 (≠ P417)
Query Sequence
>WP_052123206.1 NCBI__GCF_000769915.1:WP_052123206.1
MPLTTNPYDLSTLSEYQYYTDIQVNQMLEISQKSFRKWGKTPLKKRVKFIKNLIFVLTKK
QHLLAEKCSQEMGKPLKQAIAEVKKCSLLCEFYLEHAEKFLQDEKISSDAGESFVTHEPL
GVILGVMPWNFPYWQVFRFAIPAIIAGNTVVVKHASNVAECAQLLEELFKEAEFPEMIYQ
NLQISGSQVKNVIENPIIKGVSLTGSEKAGATVASTAANLIKKSVLELGGSNAFIVLEDA
DLDKAVPVAVTARMQNTGQSCIAAKRFLVHSSLYDEFLKRFTTEVKKLKSGNPMDEDTDI
GPLARVDLAEDIEKQVNKSVDMGAKVIIGGRRNNAFYEPTIVVNVTSDMPLFNEEVFGPV
APVIAFDSFEEAVKLSNYSDFGLGVNIFTEDIEGIKEKISLFEEGAVFINAMVKSDPALP
FGGVKKSGFGRELAENGIKEFVNVKTVYIAK
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory