SitesBLAST
Comparing WP_052473864.1 NCBI__GCF_000828635.1:WP_052473864.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6bfgA Crystal structure of monotopic membrane protein (s)-mandelate dehydrogenase (see paper)
39% identity, 93% coverage: 14:382/396 of query aligns to 5:365/373 of 6bfgA
- active site: Y129 (= Y138), D156 (= D166), H272 (= H287)
- binding flavin mononucleotide: Y24 (= Y33), P77 (= P86), T78 (≠ L87), G79 (= G88), Q127 (= Q136), Y129 (= Y138), T154 (= T164), K248 (= K263), H272 (= H287), G273 (= G288), R275 (= R290), D301 (= D318), S302 (≠ G319), G303 (= G320), R305 (= R322), G324 (= G341), R325 (= R342)
P20932 (S)-mandelate dehydrogenase; MDH; L(+)-mandelate dehydrogenase; EC 1.1.99.31 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
39% identity, 93% coverage: 14:382/396 of query aligns to 7:367/393 of P20932
- PTG 79:81 (≠ PLG 86:88) binding FMN
- G81 (= G88) mutation to A: 23-fold decrease in catalytic activity with mandelate as substrate and DCPIP as electron acceptor, but no change in affinity for mandelate. Shows a modestly higher reactivity with molecular oxygen.
- S108 (= S115) binding FMN
- Q129 (= Q136) binding FMN
- T156 (= T164) binding FMN
- K250 (= K263) binding FMN
- DSGFR 303:307 (≠ DGGVR 318:322) binding FMN
- GR 326:327 (= GR 341:342) binding FMN
Q8Z0C8 L-lactate oxidase; LOX; Glyoxylate oxidase; No-LOX; EC 1.1.3.-; EC 1.2.3.5 from Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) (see paper)
41% identity, 95% coverage: 11:387/396 of query aligns to 6:363/365 of Q8Z0C8
- M82 (≠ L87) mutation to T: Increases oxidation activity with both L-lactate and glycolate. Shows a 6-fold decrease in the L-lactate/glycolate oxidase activity ratio.
- L112 (≠ V117) mutation to W: Impairs oxidation of L-lactate. Shows a 2-fold decrease in the L-lactate/glycolate oxidase activity ratio.
- F212 (≠ V236) mutation to V: Impairs oxidation of L-lactate. Shows a 27-fold decrease in the L-lactate/glycolate oxidase activity ratio.
1huvA Crystal structure of a soluble mutant of the membrane-associated (s)- mandelate dehydrogenase from pseudomonas putida at 2.15a resolution (see paper)
38% identity, 93% coverage: 14:382/396 of query aligns to 4:341/349 of 1huvA
- active site: S105 (= S115), Y128 (= Y138), T153 (= T164), D155 (= D166), K224 (= K263), H248 (= H287)
- binding flavin mononucleotide: Y23 (= Y33), P76 (= P86), T77 (≠ L87), G78 (= G88), S105 (= S115), Q126 (= Q136), Y128 (= Y138), T153 (= T164), K224 (= K263), H248 (= H287), G249 (= G288), R251 (= R290), D277 (= D318), S278 (≠ G319), G279 (= G320), R281 (= R322), G300 (= G341), R301 (= R342)
2a85A Crystal structure of the g81a mutant of the active chimera of (s)- mandelate dehydrogenase in complex with its substrate 2- hydroxyoctanoate (see paper)
37% identity, 93% coverage: 14:382/396 of query aligns to 4:345/353 of 2a85A
- active site: S105 (= S115), Y128 (= Y138), T153 (= T164), D155 (= D166), K228 (= K263), H252 (= H287)
- binding flavin mononucleotide: Y23 (= Y33), P76 (= P86), T77 (≠ L87), A78 (≠ G88), S105 (= S115), Q126 (= Q136), Y128 (= Y138), T153 (= T164), K228 (= K263), H252 (= H287), G253 (= G288), R255 (= R290), D281 (= D318), S282 (≠ G319), G283 (= G320), R285 (= R322), G304 (= G341), R305 (= R342)
- binding (2s)-2-hydroxyoctanoic acid: Y128 (= Y138), N159 (≠ M170), G160 (= G171), R162 (= R173), H252 (= H287), R255 (= R290)
2a7pA Crystal structure of the g81a mutant of the active chimera of (s)- mandelate dehydrogenase in complex with its substrate 3-indolelactate (see paper)
37% identity, 93% coverage: 14:382/396 of query aligns to 4:345/353 of 2a7pA
- active site: S105 (= S115), Y128 (= Y138), T153 (= T164), D155 (= D166), K228 (= K263), H252 (= H287)
- binding 3-(indol-3-yl) lactate: Y128 (= Y138), R162 (= R173), H252 (= H287)
- binding flavin mononucleotide: Y23 (= Y33), P76 (= P86), T77 (≠ L87), A78 (≠ G88), S105 (= S115), Q126 (= Q136), Y128 (= Y138), T153 (= T164), K228 (= K263), H252 (= H287), G253 (= G288), R255 (= R290), D281 (= D318), S282 (≠ G319), G283 (= G320), R285 (= R322), G304 (= G341), R305 (= R342)
5qieA Pandda analysis group deposition of models with modelled events (e.G. Bound ligands) -- crystal structure of hao1 in complex with z2856434894
37% identity, 93% coverage: 16:384/396 of query aligns to 6:348/353 of 5qieA
- active site: Y129 (= Y138), D157 (= D166), H251 (= H287)
- binding flavin mononucleotide: Y23 (= Y33), Y24 (≠ L34), A76 (≠ P86), T77 (≠ L87), A78 (≠ G88), S105 (= S115), Q127 (= Q136), Y129 (= Y138), K227 (= K263), H251 (= H287), G252 (= G288), R254 (= R290), D282 (= D318), G283 (= G319), R286 (= R322), G305 (= G341), R306 (= R342)
- binding ~{N},~{N}-dimethyl-4-[(propan-2-ylamino)methyl]aniline: D322 (≠ H358)
Sites not aligning to the query:
Q9UJM8 2-Hydroxyacid oxidase 1; HAOX1; Glycolate oxidase; GO; GOX; Glyoxylate oxidase; EC 1.1.3.15; EC 1.2.3.5 from Homo sapiens (Human) (see 2 papers)
38% identity, 93% coverage: 16:384/396 of query aligns to 9:357/370 of Q9UJM8
- Y26 (= Y33) binding glyoxylate
- ATA 79:81 (≠ PLG 86:88) binding FMN
- S108 (= S115) binding FMN
- Q130 (= Q136) binding FMN
- Y132 (= Y138) binding glyoxylate
- T158 (= T164) binding FMN
- R167 (= R173) binding glyoxylate
- K236 (= K263) binding FMN
- S258 (= S285) binding FMN
- H260 (= H287) binding glyoxylate
- R263 (= R290) binding glyoxylate
- DGGVR 291:295 (= DGGVR 318:322) binding FMN
- GR 314:315 (= GR 341:342) binding FMN
6gmbA Structure of human hydroxyacid oxidase 1 bound with fmn and glycolate
38% identity, 93% coverage: 16:384/396 of query aligns to 9:357/362 of 6gmbA
- active site: Y132 (= Y138), D160 (= D166), H260 (= H287)
- binding flavin mononucleotide: Y26 (= Y33), Y27 (≠ L34), A79 (≠ P86), T80 (≠ L87), A81 (≠ G88), S108 (= S115), Q130 (= Q136), Y132 (= Y138), K236 (= K263), H260 (= H287), G261 (= G288), R263 (= R290), D291 (= D318), G292 (= G319), G293 (= G320), R295 (= R322), G314 (= G341), R315 (= R342)
- binding glycolic acid: Y26 (= Y33), W110 (≠ V117), Y132 (= Y138), R167 (= R173), H260 (= H287), R263 (= R290)
2rduA Crystal structure of human glycolate oxidase in complex with glyoxylate (see paper)
38% identity, 93% coverage: 16:384/396 of query aligns to 7:355/360 of 2rduA
- active site: S106 (= S115), Y130 (= Y138), T156 (= T164), D158 (= D166), K234 (= K263), H258 (= H287)
- binding flavin mononucleotide: Y24 (= Y33), Y25 (≠ L34), A77 (≠ P86), T78 (≠ L87), A79 (≠ G88), S106 (= S115), Q128 (= Q136), Y130 (= Y138), T156 (= T164), K234 (= K263), H258 (= H287), G259 (= G288), R261 (= R290), D289 (= D318), G290 (= G319), G291 (= G320), R293 (= R322), G312 (= G341), R313 (= R342)
- binding glyoxylic acid: Y24 (= Y33), W108 (≠ V117), Y130 (= Y138), R165 (= R173), H258 (= H287), R261 (= R290)
5qigA Pandda analysis group deposition of models with modelled events (e.G. Bound ligands) -- crystal structure of hao1 in complex with z1407672867
38% identity, 93% coverage: 16:384/396 of query aligns to 6:354/359 of 5qigA
- active site: Y129 (= Y138), D157 (= D166), H257 (= H287)
- binding flavin mononucleotide: Y23 (= Y33), Y24 (≠ L34), A76 (≠ P86), T77 (≠ L87), A78 (≠ G88), S105 (= S115), Q127 (= Q136), Y129 (= Y138), T155 (= T164), K233 (= K263), H257 (= H287), G258 (= G288), R260 (= R290), D288 (= D318), G289 (= G319), G290 (= G320), R292 (= R322), G311 (= G341), R312 (= R342)
- binding 2-cyclopropyl-1~{H}-imidazole-4-carboxamide: R223 (= R253), G248 (= G278), F320 (≠ A350), K324 (≠ A354), D328 (≠ H358)
Sites not aligning to the query:
5qifA Pandda analysis group deposition of models with modelled events (e.G. Bound ligands) -- crystal structure of hao1 in complex with z31792168
38% identity, 93% coverage: 16:384/396 of query aligns to 6:354/359 of 5qifA
- active site: Y129 (= Y138), D157 (= D166), H257 (= H287)
- binding flavin mononucleotide: Y23 (= Y33), Y24 (≠ L34), A76 (≠ P86), T77 (≠ L87), A78 (≠ G88), S105 (= S115), Q127 (= Q136), Y129 (= Y138), K233 (= K263), H257 (= H287), G258 (= G288), R260 (= R290), D288 (= D318), G289 (= G319), R292 (= R322), G311 (= G341), R312 (= R342)
- binding 2-cyclohexyl-~{N}-pyridin-3-yl-ethanamide: R223 (= R253), R224 (≠ E254), S227 (≠ P257)
2rdwA Crystal structure of human glycolate oxidase in complex with sulfate (see paper)
38% identity, 93% coverage: 16:384/396 of query aligns to 6:354/359 of 2rdwA
- active site: S105 (= S115), Y129 (= Y138), T155 (= T164), D157 (= D166), K233 (= K263), H257 (= H287)
- binding flavin mononucleotide: Y23 (= Y33), Y24 (≠ L34), A76 (≠ P86), T77 (≠ L87), A78 (≠ G88), Q127 (= Q136), Y129 (= Y138), T155 (= T164), K233 (= K263), H257 (= H287), G258 (= G288), R260 (= R290), D288 (= D318), G289 (= G319), R292 (= R322), G311 (= G341), R312 (= R342)
- binding sulfate ion: Y23 (= Y33), W107 (≠ V117), R164 (= R173), H257 (= H287), R260 (= R290)
6gmcA 1.2 a resolution structure of human hydroxyacid oxidase 1 bound with fmn and 4-carboxy-5-[(4-chlorophenyl)sulfanyl]-1,2,3-thiadiazole
38% identity, 93% coverage: 16:384/396 of query aligns to 9:355/360 of 6gmcA
- active site: Y132 (= Y138), D160 (= D166), H258 (= H287)
- binding 5-[(4-chlorophenyl)sulfanyl]-1,2,3-thiadiazole-4-carboxylate: Y26 (= Y33), M82 (≠ I89), W110 (≠ V117), Y132 (= Y138), R167 (= R173), F191 (≠ S199), L203 (≠ F232), Y206 (≠ W235), H258 (= H287), R261 (= R290)
- binding flavin mononucleotide: Y26 (= Y33), Y27 (≠ L34), A79 (≠ P86), T80 (≠ L87), A81 (≠ G88), S108 (= S115), Q130 (= Q136), Y132 (= Y138), T158 (= T164), K234 (= K263), H258 (= H287), G259 (= G288), R261 (= R290), D289 (= D318), G290 (= G319), R293 (= R322), G312 (= G341), R313 (= R342)
7r4nA Structure of human hydroxyacid oxidase 1 bound with 5-bromo-n-methyl- 1h-indazole-3-carboxamide
37% identity, 93% coverage: 16:384/396 of query aligns to 8:347/352 of 7r4nA
- binding 5-bromanyl-N-methyl-1H-indazole-3-carboxamide: Y25 (= Y33), A80 (≠ G88), M81 (≠ I89), W109 (≠ V117), Y131 (= Y138), R166 (= R173), M182 (≠ G211), H250 (= H287), R253 (= R290)
- binding flavin mononucleotide: Y25 (= Y33), Y26 (≠ L34), A78 (≠ P86), T79 (≠ L87), A80 (≠ G88), S107 (= S115), W109 (≠ V117), Q129 (= Q136), Y131 (= Y138), T157 (= T164), K226 (= K263), H250 (= H287), G251 (= G288), R253 (= R290), D281 (= D318), G282 (= G319), R285 (= R322), G304 (= G341), R305 (= R342)
6w44A Crystal structure of hao1 in complex with indazole acid inhibitor - compound 4 (see paper)
36% identity, 93% coverage: 16:384/396 of query aligns to 7:325/330 of 6w44A
- active site: Y130 (= Y138), D158 (= D166), H228 (= H287)
- binding flavin mononucleotide: Y24 (= Y33), A77 (≠ P86), T78 (≠ L87), A79 (≠ G88), S106 (= S115), Q128 (= Q136), Y130 (= Y138), K204 (= K263), H228 (= H287), G229 (= G288), R231 (= R290), D259 (= D318), G260 (= G319), R263 (= R322), G282 (= G341), R283 (= R342)
- binding 5-[methyl-[(2-propoxypyridin-3-yl)methyl]amino]-2~{H}-indazole-3-carboxylic acid: Y24 (= Y33), A79 (≠ G88), M80 (≠ I89), W108 (≠ V117), Y130 (= Y138), R165 (= R173), L173 (≠ M181), A174 (= A182), V177 (= V236), H228 (= H287), R231 (= R290)
5qihA Pandda analysis group deposition of models with modelled events (e.G. Bound ligands) -- crystal structure of hao1 in complex with z2697514548
36% identity, 93% coverage: 16:384/396 of query aligns to 6:339/344 of 5qihA
- active site: Y129 (= Y138), D157 (= D166), H242 (= H287)
- binding flavin mononucleotide: Y23 (= Y33), Y24 (≠ L34), A76 (≠ P86), T77 (≠ L87), A78 (≠ G88), S105 (= S115), Q127 (= Q136), Y129 (= Y138), K218 (= K263), H242 (= H287), G243 (= G288), R245 (= R290), D273 (= D318), G274 (= G319), R277 (= R322), G296 (= G341), R297 (= R342)
- binding 1-methylindazole-3-carboxamide: Y23 (= Y33), A78 (≠ G88), M79 (≠ I89), W107 (≠ V117), Y129 (= Y138), M180 (≠ G211), L187 (≠ F232), H242 (= H287)
5qidA Pandda analysis group deposition of models with modelled events (e.G. Bound ligands) -- crystal structure of hao1 in complex with z1787627869
36% identity, 93% coverage: 16:384/396 of query aligns to 6:339/344 of 5qidA
- active site: Y129 (= Y138), D157 (= D166), H242 (= H287)
- binding flavin mononucleotide: Y23 (= Y33), Y24 (≠ L34), A76 (≠ P86), T77 (≠ L87), A78 (≠ G88), S105 (= S115), Q127 (= Q136), Y129 (= Y138), K218 (= K263), H242 (= H287), G243 (= G288), R245 (= R290), D273 (= D318), G274 (= G319), R277 (= R322), G296 (= G341), R297 (= R342)
- binding 5-chloranyl-~{N}-methyl-~{N}-[[(3~{S})-oxolan-3-yl]methyl]pyrimidin-4-amine: T57 (≠ L67), E320 (≠ S365), R323 (≠ N368)
5qicA Pandda analysis group deposition of models with modelled events (e.G. Bound ligands) -- crystal structure of hao1 in complex with z30620520
36% identity, 93% coverage: 16:384/396 of query aligns to 6:339/344 of 5qicA
- active site: Y129 (= Y138), D157 (= D166), H242 (= H287)
- binding flavin mononucleotide: Y23 (= Y33), Y24 (≠ L34), A76 (≠ P86), T77 (≠ L87), A78 (≠ G88), S105 (= S115), Q127 (= Q136), Y129 (= Y138), K218 (= K263), H242 (= H287), G243 (= G288), R245 (= R290), D273 (= D318), G274 (= G319), R277 (= R322), G296 (= G341), R297 (= R342)
- binding cyclopropyl-[4-(4-fluorophenyl)piperazin-1-yl]methanone: Y131 (≠ M140), K132 (≠ R141), V136 (≠ Y145), M180 (≠ G211), F183 (≠ L214), Y190 (≠ W235), K193 (≠ S238), A194 (≠ Q239)
5qibA Pandda analysis group deposition of models with modelled events (e.G. Bound ligands) -- crystal structure of hao1 in complex with fmopl000388a
36% identity, 93% coverage: 16:384/396 of query aligns to 6:339/344 of 5qibA
- active site: Y129 (= Y138), D157 (= D166), H242 (= H287)
- binding 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydro-2h-benzo[g]pteridin-1-id-10(5h)-yl)-5-o-phosphonato-d-ribitol: Y23 (= Y33), Y24 (≠ L34), A76 (≠ P86), T77 (≠ L87), A78 (≠ G88), S105 (= S115), Q127 (= Q136), Y129 (= Y138), K218 (= K263), H242 (= H287), G243 (= G288), R245 (= R290), D273 (= D318), G274 (= G319), G275 (= G320), R277 (= R322), G296 (= G341), R297 (= R342)
- binding 5-(cyclohexylamino)pyrimidine-2,4(1H,3H)-dione: Y23 (= Y33), M79 (≠ I89), W107 (≠ V117), Y129 (= Y138), R164 (= R173), M180 (≠ G211), L187 (≠ F232), H242 (= H287), R245 (= R290)
Query Sequence
>WP_052473864.1 NCBI__GCF_000828635.1:WP_052473864.1
MNNETCGLGLAPATASDYREMARRRLPRHLFDYLDGAAYEERTAGENQQAFQRLQLRQRV
MRDVSRLNLSTKVLGQDLALPLVLAPLGIAGAMACRAEVQAARAAEAAGVPFCESTVSIC
SIEEVRAATTAPFWYQLYVMRDRGYAKDLMARAHAAGCPVLVLTVDLAVMGARYRDVRNG
MAGGLSLGGKMAKAWDLLSHPQWLLDVGVRGKPLTFGNLTAAVPDAGSLPEFKAWVDSQF
DPAVTWKDLAWVRENWPGKILLKGVLDIDDAREAAAAGADGIVVSNHGGRQLDSVAASID
ALPRIVDAVGDKLDVLMDGGVRSGLDVVKALALGAKACMLGRAWGYAVAARGEAGVAHML
SVMRSEMNVALALCGVADVAKLDRQALLDSNGDRAV
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory