SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_052666100.1 NCBI__GCF_000969705.1:WP_052666100.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
32% identity, 68% coverage: 54:273/322 of query aligns to 3:215/215 of 4ymtC

query
sites
4ymtC
V
 
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D
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L
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M
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L
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F
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I
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M
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K
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L
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V
C
 
A
G
 
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Y
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I
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E
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R
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G
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T
P
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P
V
x
L
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L
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V
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Q
I
 
L
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L
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L
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I
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Y
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N
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L
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M
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Q
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-
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M
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N
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-
N
 
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A
L
 
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T
A
 
A
L
 
G
V
 
V
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S
G
 
A
L
 
L
A
 
A
A
 
I
Y
x
N
N
 
S
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S
A
 
A
V
x
Y
L
 
V
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A
E
 
E
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R
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A
G
 
G
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A
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G
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N
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E
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A
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A
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M
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A
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M
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A
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N
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E
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x
M
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L
K
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K
D
x
E
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S
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A
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I
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V
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S
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V
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G
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F
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A
D
 
D
D
 
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-
M
 
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R
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A
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I
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Y
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Y
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E
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Y
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A
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A
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I
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L
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L
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
32% identity, 67% coverage: 54:269/322 of query aligns to 3:211/214 of 4ymwC

query
sites
4ymwC
V
 
V
D
 
D
F
 
F
E
 
L
T
 
S
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M
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V
G
 
K
W
 
Y
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L
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S
G
 
G
L
 
L
W
 
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G
 
M
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T
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L
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K
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T
I
 
I
A
 
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L
 
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L
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G
 
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A
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I
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A
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S
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L
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F
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E

Query Sequence

>WP_052666100.1 NCBI__GCF_000969705.1:WP_052666100.1
MSTVLVEELGPRGKRRVRTASIISLVLLAVLIGFILRQLYVGGQFEARLWAQFVDFETGW
PQFLITGLWGTFRAAIGAIVIALVLGLALALGRLSRLTPLRVVCGVVIDVFRGPPVLLMI
FFAYYALPQILPGGLGTTISRNPLIALVIGLAAYNTAVLAEIFRAGILSLDRGQSEAAYT
VGMTHSKAMRLVILPQALRRMIPAIVAQLATLTKDTALGYIITVTDDLMGRGRSFVQGSP
INDLQTWFVVGILYFIIVWMLTRLARRLEVQQRRKLGAGAIAVGGEADLDALAEEVEADE
PELHQGGTGGAVDEAGAGAPRV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory