SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_052666282.1 NCBI__GCF_000969705.1:WP_052666282.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
38% identity, 67% coverage: 3:68/98 of query aligns to 2:67/564 of 3al0C

query
sites
3al0C

L

V

S

T

D

K

D

D

E

L

V

V

R

L

H

H

V

L

A

E

S

N

L

L

A

A

R

R

L

L

A

E

L

L

T

S

D

E

D

D

E

Q

V

R

A

E

A

S

L

L

A

M

P

K

Q

D

L

F

S

Q

A

E

I

I

L

L

D

D

Y

Y

A

V

E

E

H

L

V

L

G

N

E

E

V

V

A

D

A

V

E

E

D

G

V

V

P

E

P

P

T

M

T

Y

H

T

P

P

F

V

A

E

L

D

T

S

N

A

V

K

T

L

R

R

P

K

D

G

D

D

P

P

R

R

Sites not aligning to the query:

active site: 110, 335
binding o5'-(l-glutamyl-sulfamoyl)-adenosine: 106, 108, 109, 118, 122, 142, 276, 294, 295, 297, 298, 324, 325, 333
binding : 144, 145, 148, 208, 213, 252, 255, 266, 269, 270, 276, 297, 298, 299, 300, 301, 304, 330, 332, 363, 364, 365, 370, 387, 389, 391, 392, 397, 400, 407, 446, 447, 453, 457, 509, 520, 524, 527, 535, 536, 538, 539

Query Sequence

>WP_052666282.1 NCBI__GCF_000969705.1:WP_052666282.1
MALSDDEVRHVASLARLALTDDEVAALAPQLSAILDYAEHVGEVAAEDVPPTTHPFALTN
VTRPDDPRPSMPRADVLAMAPMVEQDRFGVPRIVAEEG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory