SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_052667449.1 NCBI__GCF_000969705.1:WP_052667449.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
40% identity, 64% coverage: 74:220/230 of query aligns to 59:204/506 of A0A0H2ZQB9

query
sites
A0A0H2ZQB9
G
 
G
I
 
I
V
 
F
F
 
Q
T
 
T
I
 
I
P
 
P
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S
I
 
L
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A
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L
F
 
L
P
 
G
I
 
L
L
 
F
R
 
I
P
 
P
Y
 
L
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M
G
 
G
L
 
I
T
 
G
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T
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L
T
 
P
A
 
A
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L
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T
G
 
A
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L
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V
L
 
I
Y
 
Y
T
 
A
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I
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F
F
 
P
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I
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L
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Q
N
 
N
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T
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I
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T
G
 
G
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L
E
 
K
G
 
G
V
 
I
P
 
D
A
 
P
D
 
S
V
 
L
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Q
E
 
E
A
 
A
A
 
G
E
 
I
G
 
A
Q
 
F
G
 
G
Y
 
M
E
 
T
R
 
R
N
 
W
R
 
E
L
 
R
F
 
L
L
 
K
E
 
K
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F
Q
 
E
L
 
I
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P
L
 
L
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A
L
 
M
P
 
P
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V
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I
I
 
M
A
 
S
G
 
G
I
 
I
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R
I
 
T
A
 
A
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A
V
 
V
T
 
L
T
 
I
I
 
I
G
 
G
L
 
T
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A
T
 
T
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L
T
 
A
G
 
T
L
 
L
I
 
I
G
 
G
Y
 
A
G
 
G
G
 
G
F
 
L
G
 
G
F
 
S
F
 
F
I
 
I
F
 
L
D
 
L
G
 
G
L
 
I
-
 
D
R
 
R
S
 
N
N
 
N
L
 
A
Y
 
S
L
 
L
P
 
-
K
 
-
L
 
I
L
 
L
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I
G
 
G
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A
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L
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S
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S
M
 
A
A
 
V
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L
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A
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I
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A
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F
D
 
N
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F
L
 
L
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L
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K
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V
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M
E
 
E
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K
A
 
A

Sites not aligning to the query:

B5Z7I3 Ergothioneine transport permease/ergothioneine binding protein EgtU from Helicobacter pylori (strain G27) (see paper)
37% identity, 41% coverage: 74:167/230 of query aligns to 97:190/553 of B5Z7I3

query
sites
B5Z7I3
G
 
N
I
 
F
V
 
L
F
 
Y
T
 
T
I
 
I
P
 
P
S
 
S
I
 
L
A
 
A
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L
F
 
F
P
 
A
I
 
L
L
 
F
R
 
I
P
 
P
Y
 
V
F
 
I
G
 
G
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G
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L
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K
T
 
N
A
 
A
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L
V
 
L
G
 
V
L
 
L
T
 
V
L
 
L
Y
 
Y
T
 
G
L
 
L
L
 
L
F
 
P
L
 
I
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V
R
 
Y
N
 
S
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T
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Y
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N
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A
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L
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K
G
 
E
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V
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R
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E
D
 
E
V
 
V
V
 
I
E
 
K
A
 
A
A
 
A
E
 
I
G
 
G
Q
 
L
G
 
G
Y
 
C
E
 
N
R
 
P
N
 
K
R
 
E
L
 
L
F
 
F
L
 
F
E
 
R
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V
Q
 
H
L
 
F
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L
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L
A
 
A
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I
P
 
P
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Q
I
 
I
I
 
L
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A
G
 
G
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L
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R
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I
A
 
A
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V
V
 
V
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M
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L
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V
G
 
A
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M

Sites not aligning to the query:

8wm8B Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with nitrate (see paper)
26% identity, 62% coverage: 78:219/230 of query aligns to 115:252/265 of 8wm8B

query
sites
8wm8B
T
 
T
I
 
V
P
 
P
S
 
P
I
 
L
A
 
A
L
 
W
F
 
L
P
 
P
I
 
I
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L
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A
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A
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F
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Q
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Q
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A
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N
T
 
P
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S
A
 
A
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I
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F
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V
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I
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F
L
 
I
Y
 
T
T
 
S
L
 
I
L
 
W
F
 
P
L
 
I
F
 
L
R
 
L
N
 
N
I
 
T
I
 
T
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V
G
 
G
L
 
V
E
 
Q
G
 
Q
V
 
I
P
 
P
A
 
Q
D
 
D
V
 
Y
V
 
I
E
 
N
A
 
V
A
 
A
E
 
K
G
 
V
Q
 
L
G
 
R
Y
 
L
E
 
K
R
 
G
N
 
V
R
 
K
L
 
Y
F
 
F
L
 
F
E
 
K
V
 
I
Q
 
V
L
 
F
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P
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A
A
 
T
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V
P
 
P
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Y
I
 
I
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F
A
 
T
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G
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L
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R
I
 
I
A
 
G
T
 
I
-
 
G
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L
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S
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W
I
x
L
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A
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V
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x
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A
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E
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M
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G
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G
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I
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G
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S
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F
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I
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W
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D
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A
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T
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T
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E
L
 
T
P
 
-
K
 
-
L
 
-
L
 
-
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-
G
 
-
A
 
N
L
 
L
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S
P
 
E
M
 
I
A
 
I
L
 
L
A
 
A
L
 
L
I
 
I
A
 
Y
D
 
V
A
 
G
L
 
L
L
 
V
-
 
G
L
 
L
L
 
L
L
 
L
E
 
D
R
 
R

Query Sequence

>WP_052667449.1 NCBI__GCF_000969705.1:WP_052667449.1
MSLEILTTWLWLAQDGVPAGEWLSRNTDAIVRRGVEHLQLTGMSIGFGLAISIVLAIIAM
RYRWAYRPITMATGIVFTIPSIALFPILRPYFGLTTTTAVVGLTLYTLLFLFRNIIVGLE
GVPADVVEAAEGQGYERNRLFLEVQLPLALPVIIAGIRIATVTTIGLVTITGLIGYGGFG
FFIFDGLRSNLYLPKLLVGALAPMALALIADALLLLLERALTPWSRRSAA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory