Comparing WP_053935846.1 NCBI__GCF_001294205.1:WP_053935846.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
1yw4A Crystal structure of the succinylglutamate desuccinylase from chromobacterium violaceum, northeast structural genomics target cvr22.
39% identity, 97% coverage: 5:330/336 of query aligns to 5:314/319 of 1yw4A
2bcoA X-ray structure of succinylglutamate desuccinalase from vibrio parahaemolyticus (rimd 2210633) at the resolution 2.3 a, northeast structural genomics target vpr14
35% identity, 99% coverage: 1:333/336 of query aligns to 2:328/338 of 2bcoA
>WP_053935846.1 NCBI__GCF_001294205.1:WP_053935846.1
MFQGSFLAQTLAGKTTLGLPFYLPHGANVQIMDEGVIRFGPRDPQSSPLHLVISCGVHGN
ETAPVELVERLIAALLSGELKPRARVMFVLGNVAALRAGTRFVQQDMNRLFCRIPEASDD
DESRRATMLEMHLMRFFSRAIQDDKPRLHYDLHTAIHGSQIEKFAIYPRPNEGQNFQPAA
VARLARGGVSAVLLQTSTAPTFSYFSSRHCGATAFTVELGRAAPFGQNAALDLSQMEAHL
RALIGGEVPMDDSAPASMQVFRVSREIIKRSEAFELFIDAKTDNFTPLIQGQPLARDGDQ
TWTVDEVGARIIFPNPDVAVGQRAGLVIVPTESYAR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory