Comparing WP_053935921.1 NCBI__GCF_001294205.1:WP_053935921.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
6u7lA 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. (see paper)
28% identity, 96% coverage: 7:517/532 of query aligns to 9:444/460 of 6u7lA
>WP_053935921.1 NCBI__GCF_001294205.1:WP_053935921.1
MQTILCIHPDDDMLVALVDLAAGQLVSWEGDSILINTPVAAKHKFARRNLAQGELLKLYG
VPVGRAMAPIRRGEAVTTENLEHYAADVEIAATQPYQWTAPDMARWQDATFEGVVRADGR
VGTANYWLIFPLVFCENRNVEHLRNALEGPLGYATQDLAAYTLALLGEEMAAPRAVTRPF
ANVDGVRIITHAGGCGGTRADARSLCKVLAAYADHPNVAGITVFSLGCQNAQISMFQDAL
KARNPAFDKPCLIYEQQKWDSEDAMMKAVLQDTLNGLKAANAVTRQPVPLSALKIGVKCG
GSDGFSGLSANPAMGLVSDMVVAVGGGSILAEFPELCGVEASLIERCQNDDDKRRFLGMM
RDFEARAQAVGTSFAANPSPGNIRDGLITDAIKSAGAAKKGGTSPIVSVLDYGEPAARPG
LSLLCTPGGDVESVTGIVASGANVVLFSTGLGTPTGNPIVPVLKIATNTRMATRLKDMID
FDCGPVISGTPLPEVAEGLFEMVLQTAGGRYRAKADRLQQYDFIFWKRDISL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory