Comparing WP_053937132.1 NCBI__GCF_001294205.1:WP_053937132.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
Q6BF16 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; 2-oxo-3-deoxygalactonate 6-phosphate aldolase; 6-phospho-2-dehydro-3-deoxygalactonate aldolase; 6-phospho-2-keto-3-deoxygalactonate aldolase; KDPGal aldolase; EC 4.1.2.21 from Escherichia coli (strain K12) (see paper)
68% identity, 99% coverage: 1:202/205 of query aligns to 1:202/205 of Q6BF16
2v82A Kdpgal complexed to kdpgal (see paper)
68% identity, 97% coverage: 4:202/205 of query aligns to 3:201/205 of 2v82A
Sites not aligning to the query:
1wa3D Mechanism of the class i kdpg aldolase (see paper)
30% identity, 94% coverage: 9:201/205 of query aligns to 11:200/203 of 1wa3D
1euaA Schiff base intermediate in kdpg aldolase from escherichia coli (see paper)
30% identity, 84% coverage: 26:197/205 of query aligns to 34:208/213 of 1euaA
P0A955 KHG/KDPG aldolase; (4S)-4-hydroxy-2-oxoglutarate aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG aldolase; 2-keto-4-hydroxyglutarate aldolase; KHG aldolase; Ketohydroxyglutarate aldolase; Entner-Douderoff aldolase; Oxaloacetate decarboxylase; Phospho-2-dehydro-3-deoxygluconate aldolase; Phospho-2-keto-3-deoxygluconate aldolase; EC 4.1.3.42; EC 4.1.2.14; EC 4.1.1.112 from Escherichia coli (strain K12) (see 5 papers)
30% identity, 84% coverage: 26:197/205 of query aligns to 34:208/213 of P0A955
1wauA Structure of kdpg aldolase e45n mutant (see paper)
29% identity, 84% coverage: 26:197/205 of query aligns to 34:208/213 of 1wauA
2c0aB Mechanism of the class i kdpg aldolase (see paper)
29% identity, 84% coverage: 26:197/205 of query aligns to 35:209/214 of 2c0aB
Sites not aligning to the query:
3vcrA Crystal structure of a putative kdpg (2-keto-3-deoxy-6- phosphogluconate) aldolase from oleispira antarctica (see paper)
32% identity, 72% coverage: 26:172/205 of query aligns to 31:185/216 of 3vcrA
6oviA Crystal structure of kdpg aldolase from legionella pneumophila with pyruvate captured at low ph as a covalent carbinolamine intermediate
28% identity, 72% coverage: 26:172/205 of query aligns to 31:179/210 of 6oviA
5xsfA Crystal structure of the 2-keto-3-deoxy-6-phosphogluconate aldolase of zymomonas mobilis zm4 with 3-phosphoglycerate
30% identity, 83% coverage: 26:195/205 of query aligns to 31:199/209 of 5xsfA
Sites not aligning to the query:
1mxsA Crystal structure of 2-keto-3-deoxy-6-phosphogluconate (kdpg) aldolase from pseudomonas putida. (see paper)
28% identity, 79% coverage: 7:167/205 of query aligns to 20:176/216 of 1mxsA
>WP_053937132.1 NCBI__GCF_001294205.1:WP_053937132.1
MSNNSPLPLIAILRGITPQETPAHIEALIDAGFGLIEIPLNSPDWHSSIALAVRQFGQRA
QIGAGTVLQPAQVDQLAQLGARLIVTPNTNPAVISRAVGHQLQVYAGCATATEAFTALQA
GAQALKIFPSSAFGPAYIKALKAVLPAAVPVYAVGGITPANLADYMAAGCAGAGLGGDLY
RAGQSVARTAELAREFVTAYRSIQS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory