SitesBLAST
Comparing WP_054029547.1 NCBI__GCF_001293685.1:WP_054029547.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4usaA Aldehyde oxidoreductase from desulfovibrio gigas (mop), soaked with trans-cinnamaldehyde (see paper)
67% identity, 100% coverage: 1:906/907 of query aligns to 1:906/907 of 4usaA
- active site: I390 (= I390), F425 (= F425), R501 (= R501), F505 (= F505), R533 (= R533), E869 (= E869), L870 (= L870)
- binding bicarbonate ion: R460 (= R460), A531 (= A531), F532 (= F532), Y535 (= Y535), Q539 (= Q539)
- binding fe2/s2 (inorganic) cluster: V38 (≠ I38), C40 (= C40), E41 (≠ G41), G43 (≠ A43), C45 (= C45), G46 (= G46), C48 (= C48), R58 (= R58), C60 (= C60), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C137), C139 (= C139)
- binding hydrocinnamic acid: I255 (= I255), F425 (= F425), F494 (= F494), L497 (= L497), Y535 (= Y535), L626 (= L626)
- binding magnesium ion: E899 (= E899), E903 (≠ A903)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C139), T420 (= T420), F421 (= F421), G422 (= G422), R533 (= R533), W650 (= W650), H653 (= H653), G654 (= G654), Q655 (= Q655), G656 (= G656), S695 (≠ A695), G696 (= G696), G697 (= G697), Q700 (≠ S700), Q701 (= Q701), C799 (≠ N799), N800 (= N800), T804 (≠ V804), Q807 (= Q807), S865 (≠ A865), G866 (= G866), V867 (= V867), G868 (= G868), E869 (= E869)
4us9A Aldehyde oxidoreductase from desulfovibrio gigas (mop), soaked with 3- phenylpropionaldehyde (see paper)
67% identity, 100% coverage: 1:906/907 of query aligns to 1:906/907 of 4us9A
- active site: I390 (= I390), F425 (= F425), R501 (= R501), F505 (= F505), R533 (= R533), E869 (= E869), L870 (= L870)
- binding 3-phenylpropanal: I255 (= I255), F257 (= F257), P258 (= P258), H752 (≠ N752)
- binding bicarbonate ion: R460 (= R460), L498 (= L498), A531 (= A531), F532 (= F532), Y535 (= Y535), Q539 (= Q539), R890 (= R890), Y892 (≠ R892)
- binding fe2/s2 (inorganic) cluster: V38 (≠ I38), C40 (= C40), E41 (≠ G41), G43 (≠ A43), C45 (= C45), G46 (= G46), C48 (= C48), R58 (= R58), C60 (= C60), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C137), C139 (= C139)
- binding magnesium ion: E899 (= E899), E903 (≠ A903)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C139), T420 (= T420), F421 (= F421), G422 (= G422), R533 (= R533), W650 (= W650), H653 (= H653), G654 (= G654), Q655 (= Q655), G656 (= G656), S695 (≠ A695), G696 (= G696), G697 (= G697), Q700 (≠ S700), Q701 (= Q701), C799 (≠ N799), N800 (= N800), T804 (≠ V804), Q807 (= Q807), S865 (≠ A865), G866 (= G866), V867 (= V867), G868 (= G868), E869 (= E869)
4us8A Aldehyde oxidoreductase from desulfovibrio gigas (mop), soaked with benzaldehyde (see paper)
67% identity, 100% coverage: 1:906/907 of query aligns to 1:906/907 of 4us8A
- active site: I390 (= I390), F425 (= F425), R501 (= R501), F505 (= F505), R533 (= R533), E869 (= E869), L870 (= L870)
- binding bicarbonate ion: R460 (= R460), L498 (= L498), A531 (= A531), F532 (= F532), Y535 (= Y535), Q539 (= Q539)
- binding fe2/s2 (inorganic) cluster: V38 (≠ I38), C40 (= C40), E41 (≠ G41), G43 (≠ A43), C45 (= C45), G46 (= G46), C48 (= C48), R58 (= R58), C60 (= C60), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C137), C139 (= C139)
- binding benzaldehyde: I255 (= I255), I255 (= I255), L394 (= L394), F425 (= F425), F425 (= F425), F425 (= F425), F425 (= F425), L497 (= L497), L497 (= L497), R501 (= R501), A531 (= A531), Y535 (= Y535), Y535 (= Y535), L626 (= L626), L626 (= L626), L626 (= L626), P694 (= P694), G696 (= G696), G697 (= G697)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C139), T420 (= T420), F421 (= F421), G422 (= G422), R533 (= R533), H653 (= H653), G654 (= G654), Q655 (= Q655), G656 (= G656), S695 (≠ A695), G696 (= G696), G697 (= G697), Q700 (≠ S700), Q701 (= Q701), C799 (≠ N799), N800 (= N800), T804 (≠ V804), Q807 (= Q807), S865 (≠ A865), G866 (= G866), V867 (= V867), G868 (= G868), E869 (= E869)
4c7yA Aldehyde oxidoreductase from desulfovibrio gigas (mop), soaked with sodium dithionite and sodium sulfide (see paper)
67% identity, 100% coverage: 1:906/907 of query aligns to 1:906/907 of 4c7yA
- active site: I390 (= I390), F425 (= F425), R501 (= R501), F505 (= F505), R533 (= R533), E869 (= E869), L870 (= L870)
- binding bicarbonate ion: R460 (= R460), L498 (= L498), A531 (= A531), Y535 (= Y535), Q539 (= Q539)
- binding fe2/s2 (inorganic) cluster: C40 (= C40), E41 (≠ G41), G43 (≠ A43), C45 (= C45), G46 (= G46), C48 (= C48), R58 (= R58), C60 (= C60), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C137), C139 (= C139)
- binding magnesium ion: E899 (= E899), E903 (≠ A903)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C139), T420 (= T420), F421 (= F421), G422 (= G422), R533 (= R533), W650 (= W650), H653 (= H653), G654 (= G654), Q655 (= Q655), G656 (= G656), S695 (≠ A695), G696 (= G696), Q700 (≠ S700), Q701 (= Q701), C799 (≠ N799), N800 (= N800), T804 (≠ V804), Q807 (= Q807), S865 (≠ A865), G866 (= G866), V867 (= V867), G868 (= G868), E869 (= E869)
- binding hydrogen peroxide: G696 (= G696), G697 (= G697), E869 (= E869)
3fc4A Ethylene glycol inhibited form of aldehyde oxidoreductase from desulfovibrio gigas (see paper)
67% identity, 100% coverage: 1:906/907 of query aligns to 1:906/907 of 3fc4A
- active site: I390 (= I390), F425 (= F425), R501 (= R501), F505 (= F505), R533 (= R533), E869 (= E869), L870 (= L870)
- binding 1,2-ethanediol: Y535 (= Y535), Y622 (= Y622), G696 (= G696), G697 (= G697), E869 (= E869)
- binding fe2/s2 (inorganic) cluster: V38 (≠ I38), C40 (= C40), E41 (≠ G41), G43 (≠ A43), C45 (= C45), G46 (= G46), C48 (= C48), R58 (= R58), C60 (= C60), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C137), C139 (= C139)
- binding magnesium ion: E899 (= E899), E903 (≠ A903)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C139), G419 (= G419), T420 (= T420), F421 (= F421), G422 (= G422), R533 (= R533), W650 (= W650), H653 (= H653), G654 (= G654), Q655 (= Q655), G656 (= G656), S695 (≠ A695), G696 (= G696), Q700 (≠ S700), Q701 (= Q701), C799 (≠ N799), N800 (= N800), T804 (≠ V804), Q807 (= Q807), S865 (≠ A865), G866 (= G866), V867 (= V867), G868 (= G868), E869 (= E869)
3fahA Glycerol inhibited form of aldehyde oxidoreductase from desulfovibrio gigas (see paper)
67% identity, 100% coverage: 1:906/907 of query aligns to 1:906/907 of 3fahA
- active site: I390 (= I390), F425 (= F425), R501 (= R501), F505 (= F505), R533 (= R533), E869 (= E869), L870 (= L870)
- binding fe2/s2 (inorganic) cluster: V38 (≠ I38), C40 (= C40), E41 (≠ G41), G43 (≠ A43), C45 (= C45), G46 (= G46), C48 (= C48), R58 (= R58), C60 (= C60), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C137), C139 (= C139)
- binding glycerol: P416 (= P416), Y535 (= Y535), Y622 (= Y622), W683 (≠ M683), G696 (= G696), G697 (= G697), E869 (= E869), K884 (≠ H884), V889 (= V889), R890 (= R890), Y892 (≠ R892)
- binding magnesium ion: E899 (= E899), E903 (≠ A903)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C139), G419 (= G419), T420 (= T420), F421 (= F421), G422 (= G422), R533 (= R533), W650 (= W650), H653 (= H653), G654 (= G654), Q655 (= Q655), G656 (= G656), S695 (≠ A695), G696 (= G696), Q700 (≠ S700), Q701 (= Q701), C799 (≠ N799), N800 (= N800), T804 (≠ V804), Q807 (= Q807), S865 (≠ A865), G866 (= G866), V867 (= V867), G868 (= G868), E869 (= E869)
1sijA Crystal structure of the aldehyde dehydrogenase (a.K.A. Aor or mop) of desulfovibrio gigas covalently bound to [aso3]- (see paper)
67% identity, 100% coverage: 1:906/907 of query aligns to 1:906/907 of 1sijA
- active site: I390 (= I390), F425 (= F425), R501 (= R501), F505 (= F505), R533 (= R533), E869 (= E869), L870 (= L870)
- binding arsenite: Y535 (= Y535), G696 (= G696), G697 (= G697), E869 (= E869)
- binding fe2/s2 (inorganic) cluster: V38 (≠ I38), C40 (= C40), E41 (≠ G41), G43 (≠ A43), C45 (= C45), G46 (= G46), C48 (= C48), R58 (= R58), C60 (= C60), Q99 (= Q99), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C137), C139 (= C139)
- binding magnesium ion: E899 (= E899), E903 (≠ A903)
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): Q99 (= Q99), C139 (= C139), T420 (= T420), F421 (= F421), G422 (= G422), R533 (= R533), H653 (= H653), G654 (= G654), Q655 (= Q655), G656 (= G656), S695 (≠ A695), G696 (= G696), S698 (= S698), Q700 (≠ S700), Q701 (= Q701), C799 (≠ N799), N800 (= N800), T804 (≠ V804), Q807 (= Q807), S865 (≠ A865), G866 (= G866), V867 (= V867), G868 (= G868), E869 (= E869)
Q46509 Aldehyde oxidoreductase; Molybdenum iron sulfur protein; EC 1.2.99.7 from Megalodesulfovibrio gigas (Desulfovibrio gigas) (see paper)
67% identity, 100% coverage: 1:906/907 of query aligns to 1:906/907 of Q46509
- C40 (= C40) binding [2Fe-2S] cluster
- C45 (= C45) binding [2Fe-2S] cluster
- C48 (= C48) binding [2Fe-2S] cluster
- C60 (= C60) binding [2Fe-2S] cluster
- C100 (= C100) binding [2Fe-2S] cluster
- C103 (= C103) binding [2Fe-2S] cluster
- C137 (= C137) binding [2Fe-2S] cluster
- C139 (= C139) binding [2Fe-2S] cluster
1dgjA Crystal structure of the aldehyde oxidoreductase from desulfovibrio desulfuricans atcc 27774 (see paper)
65% identity, 100% coverage: 1:905/907 of query aligns to 1:905/906 of 1dgjA
- active site: V391 (≠ I390), F427 (= F425), R503 (= R501), Y507 (≠ F505), R535 (= R533), E869 (= E869), M870 (≠ L870)
- binding molybdenum (iv)oxide: G424 (= G422), R535 (= R533), G698 (= G696), E869 (= E869)
- binding fe2/s2 (inorganic) cluster: V38 (≠ I38), G39 (= G39), C40 (= C40), G41 (= G41), G43 (≠ A43), Q44 (= Q44), C45 (= C45), G46 (= G46), C48 (= C48), R58 (= R58), C60 (= C60), C100 (= C100), G101 (= G101), C103 (= C103), C137 (= C137), C139 (= C139)
- binding pterin cytosine dinucleotide: Q99 (= Q99), C139 (= C139), F423 (= F421), G424 (= G422), R535 (= R533), W652 (= W650), H655 (= H653), G656 (= G654), Q657 (= Q655), G658 (= G656), A697 (= A695), G698 (= G696), S700 (= S698), S702 (= S700), Q703 (= Q701), C799 (≠ N799), N800 (= N800), V803 (= V803), V804 (= V804), Q807 (= Q807), S865 (≠ A865), G866 (= G866), V867 (= V867), G868 (= G868), E869 (= E869)
3am9A Complex of bovine xanthine dehydrogenase and trihydroxy fyx-051 (see paper)
27% identity, 86% coverage: 129:904/907 of query aligns to 488:1274/1293 of 3am9A
- active site: Q733 (≠ I390), E768 (≠ F425), R846 (= R501), H850 (≠ F505), R878 (= R533), G1226 (= G868), E1227 (= E869)
- binding bicarbonate ion: R805 (= R460), H806 (≠ S461), T875 (≠ S530), A876 (= A531), F877 (= F532), Q884 (= Q539)
- binding calcium ion: H707 (= H365), Y709 (≠ T367), T802 (= T457), G803 (= G458), A833 (≠ H488), S836 (≠ Y491), R837 (≠ S492), S840 (≠ G495), S873 (≠ W528), N874 (≠ G529)
- binding fe2/s2 (inorganic) cluster: L710 (≠ M368)
- binding 4-[5-(2,6-dioxo-1,2,3,6-tetrahydropyridin-4-yl)-1H-1,2,4-triazol-3-yl]-6-oxo-1,6-dihydropyridine-2-carbonitrile: L614 (= L254), E768 (≠ F425), L839 (≠ F494), S842 (≠ L497), R846 (= R501), F880 (≠ Y535), F975 (≠ L626), L980 (≠ A629), A1045 (≠ G697), E1227 (= E869)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 43, 44, 228, 229, 231, 232, 233, 234, 235, 236, 309, 310, 314, 318, 319, 322, 323, 325, 326, 332, 376, 394
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 71, 111, 112, 114, 146, 148
1v97A Crystal structure of bovine milk xanthine dehydrogenase fyx-051 bound form (see paper)
27% identity, 86% coverage: 129:904/907 of query aligns to 488:1274/1298 of 1v97A
- active site: Q733 (≠ I390), E768 (≠ F425), R846 (= R501), H850 (≠ F505), R878 (= R533), G1226 (= G868), E1227 (= E869)
- binding calcium ion: A833 (≠ H488), S836 (≠ Y491), R837 (≠ S492), S840 (≠ G495), S873 (≠ W528), N874 (≠ G529)
- binding fe2/s2 (inorganic) cluster: L710 (≠ M368)
- binding 4-(5-pyridin-4-yl-1h-1,2,4-triazol-3-yl)pyridine-2-carbonitrile: E768 (≠ F425), L839 (≠ F494), R846 (= R501), F880 (≠ Y535), F975 (≠ L626), L980 (≠ A629), P1042 (= P694), A1044 (≠ G696), A1045 (≠ G697), E1227 (= E869)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 43, 44, 228, 229, 230, 231, 232, 233, 234, 235, 236, 309, 310, 318, 319, 322, 323, 325, 326, 331, 332, 375, 376
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 71, 110, 111, 112, 114, 146, 148
2ckjA Human milk xanthine oxidoreductase
28% identity, 82% coverage: 158:904/907 of query aligns to 495:1252/1264 of 2ckjA
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 228, 230, 231, 232, 233, 234, 308, 309, 317, 318, 321, 322, 324, 325, 331, 375
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 71, 111, 112, 114, 146, 147, 148
1vdvA Bovine milk xanthine dehydrogenase y-700 bound form (see paper)
26% identity, 86% coverage: 129:904/907 of query aligns to 488:1275/1299 of 1vdvA
- active site: Q734 (≠ I390), E769 (≠ F425), R847 (= R501), H851 (≠ F505), R879 (= R533), G1227 (= G868), E1228 (= E869)
- binding calcium ion: H708 (= H365), Y710 (≠ T367), T803 (= T457), G804 (= G458), A834 (≠ H488), S837 (≠ Y491), R838 (≠ S492), S841 (≠ G495), S874 (≠ W528), N875 (≠ G529)
- binding fe2/s2 (inorganic) cluster: L711 (≠ M368)
- binding 1-[3-cyano-4-(neopentyloxy)phenyl]-1h-pyrazole-4-carboxylic acid: E769 (≠ F425), L840 (≠ F494), S843 (≠ L497), R847 (= R501), F881 (≠ Y535), F976 (≠ L626), T977 (≠ D627), V978 (vs. gap), L981 (≠ A629), P1043 (= P694), A1046 (≠ G697)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 43, 44, 229, 230, 231, 232, 233, 234, 235, 236, 309, 310, 318, 319, 322, 323, 325, 326, 331, 332, 375, 376
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 71, 110, 111, 112, 114, 146, 148
1fo4A Crystal structure of xanthine dehydrogenase isolated from bovine milk (see paper)
26% identity, 86% coverage: 129:904/907 of query aligns to 488:1275/1299 of 1fo4A
- active site: Q734 (≠ I390), E769 (≠ F425), R847 (= R501), H851 (≠ F505), R879 (= R533), G1227 (= G868), E1228 (= E869)
- binding calcium ion: A834 (≠ H488), S837 (≠ Y491), R838 (≠ S492), S841 (≠ G495), S874 (≠ W528), N875 (≠ G529)
- binding fe2/s2 (inorganic) cluster: L711 (≠ M368)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 43, 44, 228, 229, 230, 231, 232, 233, 234, 235, 236, 309, 310, 318, 319, 322, 323, 325, 331, 332, 375, 376
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 71, 110, 111, 112, 114, 146, 147, 148
2e1qA Crystal structure of human xanthine oxidoreductase mutant, glu803val (see paper)
27% identity, 83% coverage: 152:904/907 of query aligns to 520:1283/1307 of 2e1qA
- active site: Q742 (≠ I390), V777 (≠ F425), R855 (= R501), H859 (≠ F505), R887 (= R533), G1235 (= G868), E1236 (= E869)
- binding bicarbonate ion: R814 (= R460), H815 (≠ S461), I852 (≠ L498), F886 (= F532), F889 (≠ Y535), G890 (= G536), Q893 (= Q539)
- binding calcium ion: E715 (≠ P364), H716 (= H365), Y718 (≠ T367), T741 (≠ S389), T747 (≠ H395), S780 (= S426), T781 (≠ P427), S784 (≠ E430), T811 (= T457), G812 (= G458)
- binding fe2/s2 (inorganic) cluster: L719 (≠ M368)
- binding hydroxy(dioxo)molybdenum: F773 (= F421), G774 (= G422), R887 (= R533), A1053 (≠ G696), A1054 (≠ G697), E1236 (= E869)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 43, 44, 230, 231, 232, 233, 234, 235, 236, 237, 238, 311, 312, 316, 320, 321, 324, 325, 327, 328, 333, 334, 377, 378
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 71, 110, 111, 112, 114, 146, 148
3unaB Crystal structure of bovine milk xanthine dehydrogenase with NAD bound (see paper)
27% identity, 81% coverage: 166:904/907 of query aligns to 521:1270/1289 of 3unaB
- active site: Q729 (≠ I390), E764 (≠ F425), R842 (= R501), H846 (≠ F505), R874 (= R533), G1222 (= G868), E1223 (= E869)
- binding calcium ion: A829 (≠ H488), S832 (≠ Y491), R833 (≠ S492), S836 (≠ G495), S869 (≠ W528), N870 (≠ G529)
- binding carbonate ion: R801 (= R460), H802 (≠ S461), T871 (≠ S530), A872 (= A531), F876 (≠ Y535), G877 (= G536), Q880 (= Q539)
- binding fe2/s2 (inorganic) cluster: L706 (≠ M368)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 43, 44, 226, 227, 228, 229, 230, 231, 232, 233, 234, 307, 308, 312, 316, 317, 320, 321, 323, 324, 329, 330, 373, 374
- binding fe2/s2 (inorganic) cluster: 39, 40, 41, 42, 44, 46, 47, 49, 71, 110, 111, 112, 114, 146, 148
- binding nicotinamide-adenine-dinucleotide: 327, 363, 364, 430, 431, 471, 478
3am9B Complex of bovine xanthine dehydrogenase and trihydroxy fyx-051 (see paper)
27% identity, 81% coverage: 166:904/907 of query aligns to 523:1272/1291 of 3am9B
- active site: Q731 (≠ I390), E766 (≠ F425), R844 (= R501), H848 (≠ F505), R876 (= R533), G1224 (= G868), E1225 (= E869)
- binding bicarbonate ion: R803 (= R460), H804 (≠ S461), T873 (≠ S530), A874 (= A531), F878 (≠ Y535), G879 (= G536), Q882 (= Q539)
- binding calcium ion: H705 (= H365), Y707 (≠ T367), T800 (= T457), G801 (= G458), A831 (≠ H488), S834 (≠ Y491), R835 (≠ S492), D836 (≠ E493), S838 (≠ G495), S871 (≠ W528), N872 (≠ G529)
- binding fe2/s2 (inorganic) cluster: L708 (≠ M368)
- binding 4-[5-(2,6-dioxo-1,2,3,6-tetrahydropyridin-4-yl)-1H-1,2,4-triazol-3-yl]-6-oxo-1,6-dihydropyridine-2-carbonitrile: E766 (≠ F425), L837 (≠ F494), R844 (= R501), F878 (≠ Y535), F973 (≠ L626), V975 (vs. gap), L978 (≠ A629), A1043 (≠ G697), E1225 (= E869)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 44, 229, 230, 232, 233, 234, 235, 236, 309, 319, 322, 323, 325, 326, 331, 332, 375, 376
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 71, 110, 111, 112, 114, 146, 148
8j79B Bovine xanthine oxidoreductase crystallized with oxypurinol
27% identity, 81% coverage: 166:904/907 of query aligns to 520:1269/1288 of 8j79B
- binding Oxypurinol: E763 (≠ F425), R841 (= R501), F875 (≠ Y535), F970 (≠ L626), T971 (≠ D627), A1039 (≠ G696), A1040 (≠ G697)
- binding calcium ion: H702 (= H365), Y704 (≠ T367), T797 (= T457), G798 (= G458), A828 (≠ H488), S831 (≠ Y491), R832 (≠ S492), S835 (≠ G495), S868 (≠ W528), N869 (≠ G529)
- binding carbonate ion: R800 (= R460), H801 (≠ S461), I838 (≠ L498), T870 (≠ S530), A871 (= A531), G876 (= G536), Q879 (= Q539)
- binding fe2/s2 (inorganic) cluster: L705 (≠ M368)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 43, 44, 227, 228, 229, 230, 231, 232, 233, 234, 307, 308, 312, 317, 320, 321, 323, 324, 330, 374
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 71, 110, 111, 112, 114, 146, 147, 148
3bdjA Crystal structure of bovine milk xanthine dehydrogenase with a covalently bound oxipurinol inhibitor (see paper)
27% identity, 81% coverage: 166:904/907 of query aligns to 521:1270/1286 of 3bdjA
- active site: Q729 (≠ I390), E764 (≠ F425), R842 (= R501), H846 (≠ F505), R874 (= R533), G1222 (= G868), E1223 (= E869)
- binding Oxypurinol: E764 (≠ F425), R842 (= R501), F876 (≠ Y535), F971 (≠ L626), T972 (≠ D627), A1040 (≠ G696), A1041 (≠ G697), E1223 (= E869)
- binding calcium ion: A829 (≠ H488), S832 (≠ Y491), R833 (≠ S492), S836 (≠ G495), S869 (≠ W528), N870 (≠ G529)
- binding carbonate ion: R801 (= R460), H802 (≠ S461), T871 (≠ S530), A872 (= A531), F876 (≠ Y535), G877 (= G536), Q880 (= Q539)
- binding fe2/s2 (inorganic) cluster: L706 (≠ M368)
- binding Oxo(sulfanyl)molybdenum(IV) ION: G761 (= G422), A872 (= A531), F873 (= F532), R874 (= R533), E1223 (= E869)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 43, 44, 227, 228, 229, 230, 231, 232, 233, 234, 307, 308, 316, 317, 320, 321, 323, 324, 329, 330, 373, 374
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 69, 71, 110, 111, 112, 114, 146, 148
3amzA Bovine xanthine oxidoreductase urate bound form (see paper)
27% identity, 81% coverage: 166:904/907 of query aligns to 523:1272/1291 of 3amzA
- active site: Q731 (≠ I390), E766 (≠ F425), R844 (= R501), H848 (≠ F505), R876 (= R533), G1224 (= G868), E1225 (= E869)
- binding bicarbonate ion: R803 (= R460), H804 (≠ S461), T873 (≠ S530), A874 (= A531), F878 (≠ Y535), G879 (= G536), Q882 (= Q539)
- binding calcium ion: A831 (≠ H488), S834 (≠ Y491), R835 (≠ S492), S838 (≠ G495), S871 (≠ W528), N872 (≠ G529)
- binding fe2/s2 (inorganic) cluster: L708 (≠ M368)
- binding 1,4-dihydronicotinamide adenine dinucleotide: S1189 (vs. gap)
- binding uric acid: E766 (≠ F425), R844 (= R501), F878 (≠ Y535), F973 (≠ L626), T974 (≠ D627), A1043 (≠ G697), E1225 (= E869)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 44, 229, 230, 231, 232, 233, 234, 235, 236, 309, 318, 319, 322, 323, 325, 326, 331, 332, 375, 376
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 71, 110, 111, 112, 114, 146, 148
- binding 1,4-dihydronicotinamide adenine dinucleotide: 328, 329, 330, 365, 366, 402, 403, 430, 432, 433, 473, 480
Query Sequence
>WP_054029547.1 NCBI__GCF_001293685.1:WP_054029547.1
MMKRTLHVNGVPRTVIVEADQSLANVLREQLGLTGTKIGCGQAQCGCCNVILDDKLVRSC
VTKMSKVADGSTVITVEGIGNRDNLHPIQLSWIVHGGAQCGFCTPGFIVSVKALLDQNPN
PTREDVREWFQTHRNACRCTGYKQLVDAVMDAAKVMRGEMKAEDLLFRIPPDGHIWGTNH
PRPSAVAKVTGTLDYGADLGLKMPADTLYLALVQAKVSHANIKGIDTSEAEKMPGVFKVV
TAKDVTGKNRITGLITFPTNKGDGWDRPILCDQKVFQYGDAIAIVCADNEYQARRAAEKV
KVDLEELPAYMSAPAAMAEDAMEIHPGTPNVYFELPVVKGGETAPLMQSAAYTAEGDYYL
QRQPHLTMETDVGCAYFDDEERLTIHSKSIAIHLHSAMIAAGVGISPNKLRLVQNPAGGT
FGYKFSPTMEALLGVACMATGRPVFLRYDYQQHITYTGKRSPFWMKVKYGADKEGKIVAM
ESDWSVDHGPYSEFGDLLTLRGAQFIGAGYGIPNIRGMGRTVCTNHAWGSAFRAYGSPQS
FLASESLIDELAEKMGIDPLELRARNVYRPGDTTPTGQVPEVFCFQEMIEKLRPIYTSAL
EKAGQNSTADVKRGVGISLGIYGCGLDGADSSEIRVALNPDNTITVFSSWEDHGQGADMG
ALGTAHKAFEPMGVQPDRIRLVMNDTAITPNSGPAGGSRSQVVTGNAIKNGCEMLMAAMR
KPDGTYRTFAEMEAENLPVSYSGQWTASMCTNCDLKTSQGEPFSVYMYGMFMAEVAVETA
TGKTTVEGFTAISDVGSINNKLVVDGQMYGGIAQGIGLALSEDFEDLSKHNNLRACGLPY
AKMIPDKMDLHYIESPRENGPFGAAGVGELPLTSSHVAVINAIHNACGVRIRHLPALPEK
VLAALKK
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory