Comparing WP_054656298.1 NCBI__GCF_002217945.1:WP_054656298.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
33% identity, 84% coverage: 12:218/247 of query aligns to 5:215/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
33% identity, 83% coverage: 12:217/247 of query aligns to 5:214/214 of 4ymwC
>WP_054656298.1 NCBI__GCF_002217945.1:WP_054656298.1
MNFDWHYFFSLFIKLPAYVPITLLMAILSMILAIFIGGFLTSLQLSTIAPLRGFAHFYIS
LFRGMPTLVQLFIIFYGLPQIFPALRGLSAFVAVVVGLGFKQASYLAEIFRAAVNSVDKG
QIEAGQSLNISRTKLFLNVVLPQATINALPATGNTFVSLVKETSLAFTLGLTELFGDGKL
IAGQSFKYFETYLAVGIIYWLLITIYTWLQHLLENSLQTPYRRTAHVINQSKEPFSEHRT
EASLKTH
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory