Comparing WP_057507887.1 NCBI__GCF_001431535.1:WP_057507887.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
64% identity, 99% coverage: 10:655/655 of query aligns to 4:650/650 of 5ws4A
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
56% identity, 99% coverage: 8:655/655 of query aligns to 2:648/648 of P75831
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
53% identity, 98% coverage: 10:653/655 of query aligns to 3:615/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
52% identity, 98% coverage: 10:654/655 of query aligns to 3:592/592 of 5lj7A
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
49% identity, 34% coverage: 10:230/655 of query aligns to 3:223/226 of 5xu1B
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
48% identity, 33% coverage: 10:227/655 of query aligns to 1:223/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
48% identity, 33% coverage: 10:227/655 of query aligns to 1:223/230 of 1l2tA
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
41% identity, 34% coverage: 7:230/655 of query aligns to 2:226/233 of P75957
7mdyC Lolcde nucleotide-bound
42% identity, 34% coverage: 9:230/655 of query aligns to 1:223/226 of 7mdyC
7arlD Lolcde in complex with lipoprotein and adp (see paper)
42% identity, 34% coverage: 9:229/655 of query aligns to 1:222/222 of 7arlD
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
41% identity, 34% coverage: 7:230/655 of query aligns to 1:225/229 of 7v8iD
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
44% identity, 31% coverage: 29:230/655 of query aligns to 18:219/223 of 2pclA
8g4cB Bceabs atpgs high res tm (see paper)
35% identity, 33% coverage: 9:227/655 of query aligns to 2:221/248 of 8g4cB
7tchB Bceab e169q variant atp-bound conformation (see paper)
35% identity, 33% coverage: 9:227/655 of query aligns to 1:220/245 of 7tchB
7w78A Heme exporter hrtba in complex with mg-amppnp (see paper)
44% identity, 32% coverage: 20:228/655 of query aligns to 14:216/218 of 7w78A
7w79A Heme exporter hrtba in complex with mn-amppnp (see paper)
44% identity, 32% coverage: 20:228/655 of query aligns to 14:216/216 of 7w79A
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
38% identity, 33% coverage: 10:228/655 of query aligns to 1:220/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
38% identity, 33% coverage: 10:228/655 of query aligns to 2:221/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
38% identity, 33% coverage: 10:228/655 of query aligns to 2:221/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
38% identity, 33% coverage: 10:228/655 of query aligns to 2:221/344 of 6cvlD
>WP_057507887.1 NCBI__GCF_001431535.1:WP_057507887.1
MSTPAASTVLLRLRDLRREFPAGEDTIAVLRDVNLDIHAGEMVAIVGQSGSGKSTLMNIL
GCLDRPTRGSYQVAGRETGRMGPDELAELRREHFGFIFQRYHLLGDLDARGNVEVPAIYA
GNPSEQRSARAVQLLQRLGLGDRMQHKPGQLSGGQQQRVSIARALMNGGEVILADEPTGA
LDTRSGEEVMGILGELHAEGHTIIIVTHDMSVAEHAQRIIEIRDGEIIADRINQNAPAYR
AQRAPSIDAGKGNSWRAARDRFTEAFRMALLAMNAHRLRTFLTMLGIIIGIASVVSVVAL
GNGSQQQILQNISSLGTNTIDVYPGRGFGDMRSARVQTLKASDADALAGQSYVDSATPSV
STSVTARYRNLSATASVSGVGEQFFRVKGVSLVNGSFFDSEAVKSLAQVAVIDENTRTQF
FPDSDPIGQVILLGNVPARVVGVAKRQSFGFGGSTSLSVWVPHTTAMSRMLGQNHVSSIT
VRVKDDTPMDAAQAAITNVLTLRHGTEDFFLSNSAEIRETIEQTTRTMTLLIGAIAAIAL
LVGGIGVMNIMLVSVTERTREIGVRMAVGARQSDIRQQFLIEAVLVCLLGGLIGVSLALA
LGWAFGRLSSDFQMVFSTASIIAAFACSTLIGVAFGFLPARSAAQLDPVDALARE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory