SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_057509062.1 NCBI__GCF_001431535.1:WP_057509062.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P0AFF4 Nucleoside permease NupG; Nucleoside-transport system protein NupG from Escherichia coli (strain K12) (see paper)
32% identity, 97% coverage: 7:397/405 of query aligns to 6:407/418 of P0AFF4

query
sites
P0AFF4
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F
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-
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L
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K
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D
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G
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A
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S
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I
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A
A
 
V
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Y
L
 
S
S
 
S
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L
S
 
G
I
 
I
G
 
A
A
 
A
I
 
V
V
 
F
A
 
M
P
 
P
F
 
A
L
 
L
V
 
L
G
 
G
L
 
I
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V
A
 
A
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D
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K
Y
 
W
F
 
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S
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A
Q
 
K
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V
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Y
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A
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I
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C
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H
L
 
T
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I
G
 
G
A
 
A
V
 
I
L
 
T
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L
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F
M
 
M
A
 
A
S
 
A
T
 
Q
A
 
V
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T
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T
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P
G
 
E
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A
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M
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F
A
 
L
C
 
V
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I
M
 
L
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I
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N
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S
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F
L
 
A
F
 
Y
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M
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P
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T
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L
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G
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L
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I
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N
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Y
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Y
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A
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D
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F
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P
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I
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G
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I
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A
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M
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L
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S
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G
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F
E
 
E
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-
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-
E
 
-
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M
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Q
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L
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Y
M
 
I
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A
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A
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S
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A
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I
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L
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F
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A
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A
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F
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A
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M
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A
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F
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F
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L
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L
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G
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A
P
 
E
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L
A
x
Q
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I
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T
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x
N
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M
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F
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G
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N
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T
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F
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L
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H
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S
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D
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K
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D
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P
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A
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A
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V

Query Sequence

>WP_057509062.1 NCBI__GCF_001431535.1:WP_057509062.1
MTYAMSRLGAMMFLQFFIWGAWFVTLGTYLVQGPLQASASQVATAFLSQSIGAIVAPFLV
GLVADRYFAAQRILAVLHLAGAVLMWMASTASDFGTFSACVMGYMLLFMPTLALANSVAM
RHMQSPEKQFPLVRVAGSVGWIVAGVLIGWLGWEQAHRLELTFQMAAIASLALGLYAFTL
PHTPPLARQRDAGMGQILGLDSLRLLKSRSYLVFFLASIAICIPLAFYYNFTNPYLNDLG
VRGAAGLQSLGQVSEVLLMLAMPFLFVRLGVKTMLAVGMAAWVVRYVMFAFGDAGGGFSL
LVIGIVLHGICYDFFFVTGQIYTDAHAGPAARSSAQGFITLATYGVGMLIGTFLSGAVVE
HYTTAAGPDWQKIWLFPAGVALVVLIAFLLLFRDRPVIAAAPSTP

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory