Comparing WP_058857311.1 NCBI__GCF_001482365.1:WP_058857311.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1gvhA The x-ray structure of ferric escherichia coli flavohemoglobin reveals an unespected geometry of the distal heme pocket (see paper)
28% identity, 58% coverage: 47:272/388 of query aligns to 182:390/396 of 1gvhA
Sites not aligning to the query:
P24232 Flavohemoprotein; Flavohemoglobin; HMP; Hemoglobin-like protein; Nitric oxide dioxygenase; NO oxygenase; NOD; EC 1.14.12.17 from Escherichia coli (strain K12) (see 2 papers)
28% identity, 58% coverage: 47:272/388 of query aligns to 182:390/396 of P24232
Sites not aligning to the query:
6laaA Crystal structure of full-length cyp116b46 from tepidiphilus thermophilus (see paper)
25% identity, 98% coverage: 8:386/388 of query aligns to 431:753/753 of 6laaA
Sites not aligning to the query:
6kbhA Crystal structure of an intact type iv self-sufficient cytochrome p450 monooxygenase
28% identity, 87% coverage: 49:386/388 of query aligns to 481:765/765 of 6kbhA
Sites not aligning to the query:
P33164 Phthalate dioxygenase reductase; PDR; EC 1.-.-.- from Burkholderia cepacia (Pseudomonas cepacia) (see paper)
23% identity, 83% coverage: 66:386/388 of query aligns to 55:322/322 of P33164
2piaA Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine nucleotides to [2fe-2s] (see paper)
23% identity, 83% coverage: 66:386/388 of query aligns to 54:321/321 of 2piaA
Sites not aligning to the query:
1krhA X-ray structure of benzoate dioxygenase reductase (see paper)
25% identity, 59% coverage: 45:273/388 of query aligns to 135:335/337 of 1krhA
Sites not aligning to the query:
1rfkB Crystal structure of 2fe2s ferredoxin from thermophilic cyanobacterium mastigocladus laminosus (see paper)
38% identity, 21% coverage: 304:383/388 of query aligns to 12:89/97 of 1rfkB
4eh1A Crystal structure of the flavohem-like-fad/NAD binding domain of nitric oxide dioxygenase from vibrio cholerae o1 biovar el tor
25% identity, 58% coverage: 47:272/388 of query aligns to 33:235/237 of 4eh1A
P0A3C7 Ferredoxin-1; Ferredoxin I from Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) (see paper)
40% identity, 21% coverage: 304:383/388 of query aligns to 13:90/99 of P0A3C7
Sites not aligning to the query:
1ewyC Anabaena pcc7119 ferredoxin:ferredoxin-NADP+-reductase complex (see paper)
40% identity, 21% coverage: 304:383/388 of query aligns to 12:89/98 of 1ewyC
1czpA Anabaena pcc7119 [2fe-2s] ferredoxin in the reduced and oxixized state at 1.17 a (see paper)
40% identity, 21% coverage: 304:383/388 of query aligns to 12:89/98 of 1czpA
3b2gA Leptolyngbya boryana ferredoxin (see paper)
39% identity, 20% coverage: 304:380/388 of query aligns to 12:86/98 of 3b2gA
P49050 Nitrate reductase [NADPH]; NR; EC 1.7.1.3 from Pichia angusta (Yeast) (Hansenula polymorpha) (see paper)
25% identity, 65% coverage: 16:269/388 of query aligns to 604:858/859 of P49050
Sites not aligning to the query:
6xtfD Crystal structure a thioredoxin reductase from gloeobacter violaceus bound to its electron donor (see paper)
42% identity, 19% coverage: 309:380/388 of query aligns to 15:84/96 of 6xtfD
7ylrA Structure of a bacteria protein
27% identity, 71% coverage: 112:385/388 of query aligns to 85:326/326 of 7ylrA
Sites not aligning to the query:
1pfdA The solution structure of high plant parsley [2fe-2s] ferredoxin, nmr, 18 structures (see paper)
41% identity, 16% coverage: 320:383/388 of query aligns to 24:87/96 of 1pfdA
P27320 Ferredoxin-1; Ferredoxin I from Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) (see 3 papers)
39% identity, 21% coverage: 301:380/388 of query aligns to 9:85/97 of P27320
Sites not aligning to the query:
5aukA Crystal structure of the ga-substituted ferredoxin (see paper)
39% identity, 21% coverage: 301:380/388 of query aligns to 8:84/96 of 5aukA
2kajA Nmr structure of gallium substituted ferredoxin (see paper)
39% identity, 21% coverage: 301:380/388 of query aligns to 8:84/96 of 2kajA
>WP_058857311.1 NCBI__GCF_001482365.1:WP_058857311.1
MTDSTAQAPAKRRASFNSLEVSQVRRLTADSVEVAFAVPPELVEDYDYLPGQYVALRAEI
GGHEVRRSYSICAEPRPGEIRVAIKKDIGGVFSTWANEQLKAGDRLDVMNPQGAFTSKLR
LTSLNDPEKLAAEEVAKNSSVHLVAFAAGSGITPIMAIAKAVLRASETSTFDLVYANRSA
MDVMFAEELGDLKDKYPSRLAVHHVLSREQRISPLMSGRIDADKLNEILDEVVQVDRTDE
WFLCGPFELVQLCRDTLAARGVPEESIRFELFTTGRPENPQGQQGRVVEADPSGENYGIE
FTLDGLSSRIESPKSAHETVLNAALRVRPDVPFACAGGVCGTCRAKVVSGEFEMEENYAL
EKDEVDAGYVLTCQTRPTTDELVVDFDA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory