SitesBLAST
Comparing WP_058929629.1 NCBI__GCF_001484605.1:WP_058929629.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3jz4A Crystal structure of e. Coli NADP dependent enzyme (see paper)
49% identity, 94% coverage: 26:493/499 of query aligns to 13:479/481 of 3jz4A
- active site: N156 (= N169), K179 (= K192), E254 (= E268), C288 (= C302), E385 (= E399), E462 (= E476)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: P154 (= P167), W155 (= W168), K179 (= K192), A181 (= A194), S182 (≠ N195), A212 (= A226), G216 (≠ T230), G232 (= G246), S233 (= S247), I236 (≠ V250), C288 (= C302), K338 (= K352), E385 (= E399), F387 (= F401)
P25526 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD; SSDH; Glutarate-semialdehyde dehydrogenase; EC 1.2.1.79; EC 1.2.1.- from Escherichia coli (strain K12) (see paper)
48% identity, 94% coverage: 26:493/499 of query aligns to 14:480/482 of P25526
8of1A Structure of aldh5f1 from moss physcomitrium patens in complex with NAD+ in the contracted conformation
46% identity, 94% coverage: 26:495/499 of query aligns to 31:499/505 of 8of1A
- binding nicotinamide-adenine-dinucleotide: I170 (= I165), A171 (≠ T166), P172 (= P167), W173 (= W168), K197 (= K192), A230 (≠ T225), F248 (= F244), G250 (= G246), S251 (= S247), V254 (= V250), M257 (≠ R253), L273 (= L269), C306 (= C302), K356 (= K352), E403 (= E399), F405 (= F401)
8c54A Cryo-em structure of nadh bound sla dehydrogenase rlgabd from rhizobium leguminosarum bv. Trifolii srd1565 (see paper)
46% identity, 94% coverage: 26:493/499 of query aligns to 13:479/482 of 8c54A
- binding 1,4-dihydronicotinamide adenine dinucleotide: I152 (= I165), T153 (= T166), P154 (= P167), K179 (= K192), A212 (= A226), K213 (≠ G227), F230 (= F244), T231 (= T245), G232 (= G246), S233 (= S247), V236 (= V250), W239 (≠ R253), G256 (= G270)
P51649 Succinate-semialdehyde dehydrogenase, mitochondrial; Aldehyde dehydrogenase family 5 member A1; NAD(+)-dependent succinic semialdehyde dehydrogenase; EC 1.2.1.24 from Homo sapiens (Human) (see 5 papers)
46% identity, 94% coverage: 23:491/499 of query aligns to 61:530/535 of P51649
- C93 (≠ A57) to F: in SSADHD; 3% of activity; dbSNP:rs765561257
- G176 (= G140) to R: in SSADHD; <1% of activity; dbSNP:rs72552281
- H180 (≠ V144) to Y: 83% of activity; dbSNP:rs2760118
- P182 (= P146) to L: 48% of activity; dbSNP:rs3765310
- R213 (= R177) binding substrate; mutation to A: Reduces catalytic activity to less than 15% of wild-type.
- C223 (= C187) to Y: in SSADHD; 5% of activity; dbSNP:rs72552282
- KPAE 228:231 (≠ KSAN 192:195) binding NAD(+)
- T233 (= T197) to M: in SSADHD; 4% of activity; dbSNP:rs1326526453
- A237 (≠ S201) to S: 65% of activity; dbSNP:rs62621664
- N255 (= N219) to S: in SSADHD; 17% of activity; dbSNP:rs145087265
- G268 (vs. gap) to E: in SSADHD; <1% of activity; dbSNP:rs375628463
- GSTTTG 284:289 (≠ GSTEVG 246:251) binding NAD(+)
- R334 (= R296) binding substrate; mutation to A: Reduces catalytic activity to less than 15% of wild-type.
- N335 (= N297) to K: in SSADHD; 1% of activity; dbSNP:rs72552283
- C340 (= C302) modified: Disulfide link with 342, In inhibited form
- C342 (≠ A304) modified: Disulfide link with 340, In inhibited form; mutation to A: Loss of regulation by redox state.
- N372 (≠ R333) natural variant: N -> S
- P382 (= P343) to L: in SSADHD; 2% of activity
- V406 (≠ A367) to I: in dbSNP:rs143741652
- G409 (= G370) to D: in SSADHD; <1% of activity; dbSNP:rs118203984
- S498 (= S459) binding substrate; mutation to A: Reduces catalytic activity to less than 15% of wild-type.
Sites not aligning to the query:
- 36 G → R: no effect on succinate-semialdehyde dehydrogenase activity; dbSNP:rs4646832
- 533 G → R: in SSADHD; <1% of activity; dbSNP:rs72552284
2w8rA The crystal structure of human ssadh in complex with NAD+ (see paper)
45% identity, 94% coverage: 23:491/499 of query aligns to 11:480/485 of 2w8rA
2w8qA The crystal structure of human ssadh in complex with ssa. (see paper)
45% identity, 94% coverage: 23:491/499 of query aligns to 11:480/485 of 2w8qA
5x5uA Crystal structure of alpha-ketoglutarate-semialdehyde dehydrogenase (kgsadh) complexed with NAD (see paper)
40% identity, 94% coverage: 23:493/499 of query aligns to 5:474/476 of 5x5uA
- active site: N151 (= N169), K174 (= K192), E249 (= E268), C283 (= C302), E380 (= E399), E457 (= E476)
- binding glycerol: D15 (≠ P33), A16 (= A34), A17 (= A35), G19 (= G37)
- binding nicotinamide-adenine-dinucleotide: P149 (= P167), P207 (≠ T225), A208 (= A226), S211 (≠ T229), G227 (= G246), S228 (= S247), V231 (= V250), R329 (≠ K348), R330 (≠ S349), E380 (= E399), F382 (= F401)
5x5tA Crystal structure of alpha-ketoglutarate semialdehyde dehydrogenase (kgsadh) from azospirillum brasilense (see paper)
40% identity, 94% coverage: 23:493/499 of query aligns to 5:474/476 of 5x5tA
P17202 Aminoaldehyde dehydrogenase BADH; 4-trimethylammoniobutyraldehyde dehydrogenase BADH; Aminobutyraldehyde dehydrogenase BADH; Betaine aldehyde dehydrogenase; SoBADH; EC 1.2.1.-; EC 1.2.1.47; EC 1.2.1.19; EC 1.2.1.8 from Spinacia oleracea (Spinach) (see 3 papers)
37% identity, 94% coverage: 25:491/499 of query aligns to 10:482/497 of P17202
- I28 (≠ E43) binding K(+)
- D96 (≠ E109) binding K(+)
- SPW 156:158 (≠ TPW 166:168) binding NAD(+)
- Y160 (≠ F170) mutation to A: Decreases binding affinity for betaine aldehyde; increases binding affinity for 4-(trimethylamino)butanal.
- W167 (≠ R177) mutation to A: Decreases binding affinity for betaine aldehyde; increases binding affinity for 4-aminobutanal.
- KPSE 182:185 (≠ KSAN 192:195) binding NAD(+)
- L186 (= L196) binding K(+)
- SSAT 236:239 (≠ STEV 247:250) binding NAD(+)
- V251 (= V262) binding in other chain
- L258 (= L269) binding NAD(+)
- W285 (≠ R296) mutation to A: Decreases binding affinity for betaine aldehyde.
- E390 (= E399) binding NAD(+)
- A441 (≠ M450) mutation to I: Decreases binding affinity for betaine aldehyde; increases binding affinity for 4-aminobutanal.
- C450 (≠ S459) mutation to S: Loss of partial inactivation by betaine aldehyde in the absence of NAD(+).
- W456 (≠ F465) binding NAD(+); mutation to A: Decreases binding affinity for betaine aldehyde.
- K460 (= K469) binding K(+)
Q63639 Retinal dehydrogenase 2; RALDH 2; RalDH2; Aldehyde dehydrogenase family 1 member A2; ALDH1A2; Retinaldehyde-specific dehydrogenase type 2; RALDH(II); EC 1.2.1.36 from Rattus norvegicus (Rat) (see paper)
38% identity, 95% coverage: 23:496/499 of query aligns to 38:514/518 of Q63639
6b5hA Aldh1a2 liganded with NAD and 1-(4-cyanophenyl)-n-(3-fluorophenyl)-3- [4-(methylsulfonyl)phenyl]-1h-pyrazole-4-carboxamide (compound cm121) (see paper)
38% identity, 95% coverage: 23:496/499 of query aligns to 12:488/492 of 6b5hA
- active site: N161 (= N169), E260 (= E268), C294 (= C302), E468 (= E476)
- binding 1-(4-cyanophenyl)-N-(3-fluorophenyl)-3-[4-(methylsulfonyl)phenyl]-1H-pyrazole-4-carboxamide: V112 (≠ E120), G116 (= G124), F162 (= F170), W169 (≠ R177), Q284 (≠ L292), F288 (≠ R296), T295 (= T303), N449 (≠ V457), L451 (≠ S459), N452 (= N460), F457 (= F465)
- binding nicotinamide-adenine-dinucleotide: I157 (= I165), I158 (≠ T166), W160 (= W168), N161 (= N169), K184 (= K192), G217 (vs. gap), G221 (= G227), F235 (= F244), T236 (= T245), G237 (= G246), S238 (= S247), V241 (= V250), E260 (= E268), L261 (= L269), C294 (= C302), F393 (= F401)
6b5gA Aldh1a2 liganded with NAD and (3-ethoxythiophen-2-yl){4-[4-nitro-3- (pyrrolidin-1-yl)phenyl]piperazin-1-yl}methanone (compound 6-118) (see paper)
38% identity, 95% coverage: 23:496/499 of query aligns to 12:488/492 of 6b5gA
- active site: N161 (= N169), E260 (= E268), C294 (= C302), E468 (= E476)
- binding (3-ethoxythiophen-2-yl){4-[4-nitro-3-(pyrrolidin-1-yl)phenyl]piperazin-1-yl}methanone: F162 (= F170), L165 (≠ A173), W169 (≠ R177), F288 (≠ R296), C293 (≠ A301), C294 (= C302), T295 (= T303), N449 (≠ V457), L451 (≠ S459)
- binding nicotinamide-adenine-dinucleotide: I157 (= I165), I158 (≠ T166), P159 (= P167), W160 (= W168), N161 (= N169), M166 (= M174), K184 (= K192), E187 (≠ N195), G217 (vs. gap), G221 (= G227), F235 (= F244), T236 (= T245), G237 (= G246), S238 (= S247), V241 (= V250), E260 (= E268), L261 (= L269), C294 (= C302), E391 (= E399), F393 (= F401)
6aljA Aldh1a2 liganded with NAD and compound win18,446 (see paper)
38% identity, 95% coverage: 23:496/499 of query aligns to 12:488/492 of 6aljA
- active site: N161 (= N169), E260 (= E268), C294 (= C302), E468 (= E476)
- binding N,N'-(octane-1,8-diyl)bis(2,2-dichloroacetamide): G116 (= G124), F162 (= F170), L165 (≠ A173), M166 (= M174), W169 (≠ R177), E260 (= E268), C293 (≠ A301), C294 (= C302), L451 (≠ S459), N452 (= N460), A453 (= A461)
- binding nicotinamide-adenine-dinucleotide: I157 (= I165), I158 (≠ T166), P159 (= P167), W160 (= W168), N161 (= N169), K184 (= K192), E187 (≠ N195), G217 (vs. gap), G221 (= G227), F235 (= F244), G237 (= G246), S238 (= S247), V241 (= V250), Q341 (≠ S349), K344 (= K352), E391 (= E399), F393 (= F401)
O94788 Retinal dehydrogenase 2; RALDH 2; RalDH2; Aldehyde dehydrogenase family 1 member A2; ALDH1A2; Retinaldehyde-specific dehydrogenase type 2; RALDH(II); EC 1.2.1.36 from Homo sapiens (Human) (see 6 papers)
38% identity, 95% coverage: 23:496/499 of query aligns to 38:514/518 of O94788
- E50 (≠ A35) to G: in dbSNP:rs34266719
- A110 (≠ F92) to V: in dbSNP:rs35365164
- Q182 (≠ L164) to K: in DIH4; decreased retinoic acid biosynthetic process
- IPW 184:186 (≠ TPW 166:168) binding NAD(+)
- KPAE 210:213 (≠ KSAN 192:195) binding NAD(+)
- STE 264:266 (= STE 247:249) binding NAD(+)
- C320 (= C302) active site, Nucleophile
- R347 (≠ M329) to H: in DIH4; decreased expression; dbSNP:rs141245344
- V348 (≠ T330) to I: in dbSNP:rs4646626
- KQYNK 366:370 (≠ KSRDK 348:352) binding NAD(+)
- A383 (= A365) to T: in DIH4; uncertain significance; dbSNP:rs749124508
- E417 (= E399) binding NAD(+)
- E436 (≠ R418) to K: in dbSNP:rs34744827
- S461 (≠ G443) to Y: in DIH4; decreased retinoic acid biosynthetic process
6j76A Structure of 3,6-anhydro-l-galactose dehydrogenase in complex with nap (see paper)
37% identity, 93% coverage: 25:486/499 of query aligns to 4:468/477 of 6j76A
- active site: N148 (= N169), E246 (= E268), C280 (= C302), E458 (= E476)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: I144 (= I165), T145 (= T166), A146 (≠ P167), W147 (= W168), N148 (= N169), K171 (= K192), T173 (≠ A194), S174 (≠ N195), G204 (= G227), G208 (= G231), T223 (= T245), G224 (= G246), S225 (= S247), A228 (≠ V250), S231 (≠ R253), I232 (≠ L254), E246 (= E268), L247 (= L269), C280 (= C302), E381 (= E399), F383 (= F401), H447 (≠ F465)
4v37A Crystal structure of betaine aldehyde dehydrogenase from spinach showing a thiohemiacetal with 3-aminopropionaldehyde
37% identity, 94% coverage: 25:491/499 of query aligns to 8:480/495 of 4v37A
- active site: N157 (= N169), K180 (= K192), E255 (= E268), A289 (≠ C302), E388 (= E399), E465 (= E476)
- binding 3-aminopropan-1-ol: C448 (≠ S459), W454 (≠ F465)
- binding nicotinamide-adenine-dinucleotide: I153 (= I165), S154 (≠ T166), P155 (= P167), W156 (= W168), N157 (= N169), M162 (= M174), K180 (= K192), S182 (≠ A194), E183 (≠ N195), G213 (≠ A226), G217 (≠ T230), A218 (≠ G231), T232 (= T245), G233 (= G246), S234 (= S247), T237 (≠ V250), E255 (= E268), L256 (= L269), A289 (≠ C302), E388 (= E399), F390 (= F401)
4o6rA Crystal structure of a putative aldehyde dehydrogenase from burkholderia cenocepacia
38% identity, 93% coverage: 23:485/499 of query aligns to 4:469/489 of 4o6rA
- active site: N150 (= N169), K173 (= K192), E248 (= E268), C282 (= C302), E383 (= E399), E460 (= E476)
- binding adenosine monophosphate: I146 (= I165), V147 (≠ T166), K173 (= K192), G206 (= G227), G210 (= G231), Q211 (≠ P232), F224 (= F244), G226 (= G246), S227 (= S247), T230 (≠ V250), R233 (= R253)
4pz2B Structure of zm aldh2-6 (rf2f) in complex with NAD (see paper)
39% identity, 95% coverage: 17:491/499 of query aligns to 1:484/494 of 4pz2B
- active site: N159 (= N169), K182 (= K192), E258 (= E268), C292 (= C302), E392 (= E399), D469 (≠ E476)
- binding nicotinamide-adenine-dinucleotide: I155 (= I165), I156 (≠ T166), P157 (= P167), W158 (= W168), N159 (= N169), M164 (= M174), K182 (= K192), A184 (= A194), E185 (≠ N195), G215 (vs. gap), G219 (= G227), F233 (= F244), T234 (= T245), G235 (= G246), S236 (= S247), V239 (= V250), E258 (= E268), L259 (= L269), C292 (= C302), E392 (= E399), F394 (= F401)
7qk9A Crystal structure of the aldh1a3-atp complex (see paper)
38% identity, 94% coverage: 23:493/499 of query aligns to 13:486/489 of 7qk9A
- binding adenosine-5'-triphosphate: I158 (= I165), T159 (= T166), P160 (= P167), W161 (= W168), K185 (= K192), E188 (≠ N195), G218 (= G227), G222 (= G231), F236 (= F244), S239 (= S247), V242 (= V250)
Query Sequence
>WP_058929629.1 NCBI__GCF_001484605.1:WP_058929629.1
MTVTAQPAVTAEREIALLASVPTGLLINGEWRPAASGKTFDVEDPATGKVLLSIADAGAE
DGKAALDAAAAAQESWAKVPARERGEILRRAFEMVTARAEDFALLMTMEMGKPLAEARGE
VAYGAEFLRWFSEEAVRAFGRYSVSPDGKSRLLVTKKPVGPCLLITPWNFPLAMATRKIA
PAVAAGCTMVLKSANLTPLTSQLFAAVMQEAGLPAGVLNVIPTSTAGATTGPLIKDQRLR
KLSFTGSTEVGRRLLADASETVLRTSMELGGNAPFVVFEDADLDAAVAGAMLAKLRNMGE
ACTAANRFIVHESVADEFAQKFAAKMGEMTTARGTEPESKVGPLIDAKSRDKVHELVSDA
VASGAKAVLGGAPAEGPGYFYPPTILTGVTEGTRILSEEIFGPVAPIITFGTEDEAVRLA
NNTEYGLVAYVFTRDLNRGIRMGERLETGMLGLNAGVISNAAAPFGGVKQSGLGREGGLE
GIEEYLYTQYIGIADPYAG
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory