SitesBLAST
Comparing WP_058932572.1 NCBI__GCF_001484605.1:WP_058932572.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1wndA Escherichia coli ydcw gene product is a medium-chain aldehyde dehydrogenase as determined by kinetics and crystal structure (see paper)
46% identity, 99% coverage: 5:467/468 of query aligns to 4:474/474 of 1wndA
- active site: N149 (= N149), K172 (= K172), E246 (= E245), C280 (= C279), E378 (= E371), D455 (= D448)
- binding calcium ion: G249 (= G248), K250 (= K249), A251 (= A250), G405 (≠ A398), L406 (= L399), A407 (= A400), Y427 (≠ F420)
1wnbB Escherichia coli ydcw gene product is a medium-chain aldehyde dehydrogenase (complexed with nadh and betaine aldehyde) (see paper)
46% identity, 99% coverage: 5:467/468 of query aligns to 4:474/474 of 1wnbB
- active site: N149 (= N149), K172 (= K172), E246 (= E245), C280 (= C279), E378 (= E371), D455 (= D448)
- binding betaine aldehyde: D279 (= D278), F436 (≠ Q429), L438 (≠ I431)
- binding 1,4-dihydronicotinamide adenine dinucleotide: I145 (= I145), A146 (≠ T146), W148 (= W148), K172 (= K172), G204 (= G203), G208 (= G207), D209 (≠ A208), T223 (= T222), G224 (= G223), S225 (= S224), T228 (≠ A227), H231 (≠ Q230), G248 (= G247), E378 (= E371)
1wnbA Escherichia coli ydcw gene product is a medium-chain aldehyde dehydrogenase (complexed with nadh and betaine aldehyde) (see paper)
46% identity, 99% coverage: 5:467/468 of query aligns to 4:474/474 of 1wnbA
- active site: N149 (= N149), K172 (= K172), E246 (= E245), C280 (= C279), E378 (= E371), D455 (= D448)
- binding 1,4-dihydronicotinamide adenine dinucleotide: I145 (= I145), A146 (≠ T146), W148 (= W148), K172 (= K172), G204 (= G203), G208 (= G207), D209 (≠ A208), G224 (= G223), S225 (= S224), T228 (≠ A227), H231 (≠ Q230), G248 (= G247), F380 (= F373)
P77674 Gamma-aminobutyraldehyde dehydrogenase; ABALDH; 1-pyrroline dehydrogenase; 4-aminobutanal dehydrogenase; 5-aminopentanal dehydrogenase; EC 1.2.1.19; EC 1.2.1.- from Escherichia coli (strain K12) (see paper)
46% identity, 99% coverage: 5:467/468 of query aligns to 4:474/474 of P77674
4f3xA Crystal structure of putative aldehyde dehydrogenase from sinorhizobium meliloti 1021 complexed with NAD
43% identity, 96% coverage: 21:467/468 of query aligns to 22:475/476 of 4f3xA
- active site: N150 (= N149), K173 (= K172), E247 (= E245), C281 (= C279), E379 (= E371), D456 (= D448)
- binding nicotinamide-adenine-dinucleotide: I146 (= I145), A147 (≠ T146), P148 (= P147), W149 (= W148), K173 (= K172), E176 (≠ D175), G205 (= G203), G209 (= G207), I213 (≠ V211), I223 (= I221), G225 (= G223), D226 (≠ S224), T229 (≠ A227), G249 (= G247), C281 (= C279), Q328 (= Q323), R331 (= R326), E379 (= E371), F381 (= F373)
4pz2B Structure of zm aldh2-6 (rf2f) in complex with NAD (see paper)
41% identity, 99% coverage: 5:468/468 of query aligns to 12:489/494 of 4pz2B
- active site: N159 (= N149), K182 (= K172), E258 (= E245), C292 (= C279), E392 (= E371), D469 (= D448)
- binding nicotinamide-adenine-dinucleotide: I155 (= I145), I156 (≠ T146), P157 (= P147), W158 (= W148), N159 (= N149), M164 (= M154), K182 (= K172), A184 (= A174), E185 (≠ D175), G215 (= G203), G219 (= G207), F233 (≠ I221), T234 (= T222), G235 (= G223), S236 (= S224), V239 (≠ A227), E258 (= E245), L259 (= L246), C292 (= C279), E392 (= E371), F394 (= F373)
6wsbA Crystal structure of a betaine aldehyde dehydrogenase from burkholderia pseudomallei bound to cofactor NAD (see paper)
41% identity, 97% coverage: 8:463/468 of query aligns to 10:477/489 of 6wsbA
- active site: N152 (= N149), E250 (= E245), C284 (= C279), E462 (≠ D448)
- binding nicotinamide-adenine-dinucleotide: I148 (= I145), G149 (≠ T146), A150 (≠ P147), W151 (= W148), N152 (= N149), K175 (= K172), E178 (≠ D175), G208 (≠ R204), G211 (= G207), A212 (= A208), F225 (≠ I221), T226 (= T222), G227 (= G223), G228 (≠ S224), T231 (≠ A227), V235 (= V231), E250 (= E245), L251 (= L246), G252 (= G247), C284 (= C279), E385 (= E371), F387 (= F373)
P17202 Aminoaldehyde dehydrogenase BADH; 4-trimethylammoniobutyraldehyde dehydrogenase BADH; Aminobutyraldehyde dehydrogenase BADH; Betaine aldehyde dehydrogenase; SoBADH; EC 1.2.1.-; EC 1.2.1.47; EC 1.2.1.19; EC 1.2.1.8 from Spinacia oleracea (Spinach) (see 3 papers)
38% identity, 95% coverage: 19:464/468 of query aligns to 25:483/497 of P17202
- I28 (≠ F22) binding K(+)
- D96 (≠ C88) binding K(+)
- SPW 156:158 (≠ TPW 146:148) binding NAD(+)
- Y160 (= Y150) mutation to A: Decreases binding affinity for betaine aldehyde; increases binding affinity for 4-(trimethylamino)butanal.
- W167 (= W157) mutation to A: Decreases binding affinity for betaine aldehyde; increases binding affinity for 4-aminobutanal.
- KPSE 182:185 (≠ KPAD 172:175) binding NAD(+)
- L186 (≠ T176) binding K(+)
- SSAT 236:239 (≠ STRA 224:227) binding NAD(+)
- V251 (≠ L239) binding in other chain
- L258 (= L246) binding NAD(+)
- W285 (≠ F273) mutation to A: Decreases binding affinity for betaine aldehyde.
- E390 (= E371) binding NAD(+)
- A441 (= A422) mutation to I: Decreases binding affinity for betaine aldehyde; increases binding affinity for 4-aminobutanal.
- C450 (≠ I431) mutation to S: Loss of partial inactivation by betaine aldehyde in the absence of NAD(+).
- W456 (≠ H437) binding NAD(+); mutation to A: Decreases binding affinity for betaine aldehyde.
- K460 (= K441) binding K(+)
4pxlA Structure of zm aldh2-3 (rf2c) in complex with NAD (see paper)
40% identity, 99% coverage: 5:465/468 of query aligns to 7:478/486 of 4pxlA
- active site: N154 (= N149), K177 (= K172), E253 (= E245), C287 (= C279), E384 (= E371), D461 (= D448)
- binding nicotinamide-adenine-dinucleotide: I150 (= I145), V151 (≠ T146), P152 (= P147), W153 (= W148), K177 (= K172), E180 (≠ D175), G210 (= G203), G214 (= G207), A215 (= A208), F228 (≠ I221), G230 (= G223), S231 (= S224), V234 (≠ A227), E253 (= E245), G255 (= G247), C287 (= C279), Q334 (= Q323), K337 (≠ R326), E384 (= E371), F386 (= F373)
4o6rA Crystal structure of a putative aldehyde dehydrogenase from burkholderia cenocepacia
37% identity, 98% coverage: 7:463/468 of query aligns to 7:475/489 of 4o6rA
- active site: N150 (= N149), K173 (= K172), E248 (= E245), C282 (= C279), E383 (= E371), E460 (≠ D448)
- binding adenosine monophosphate: I146 (= I145), V147 (≠ T146), K173 (= K172), G206 (= G203), G210 (= G207), Q211 (≠ A208), F224 (≠ I221), G226 (= G223), S227 (= S224), T230 (≠ A227), R233 (≠ Q230)
5gtlA NADPH complex structure of aldehyde dehydrogenase from bacillus cereus
38% identity, 98% coverage: 4:463/468 of query aligns to 17:486/491 of 5gtlA
- active site: N165 (= N149), K188 (= K172), E263 (= E245), C297 (= C279), E394 (= E371), E471 (≠ D448)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I161 (= I145), P163 (= P147), K188 (= K172), A190 (= A174), E191 (≠ D175), Q192 (≠ T176), G221 (= G203), G225 (= G207), G241 (= G223), S242 (= S224), T245 (≠ A227), L264 (= L246), C297 (= C279), E394 (= E371), F396 (= F373)
5gtkA NAD+ complex structure of aldehyde dehydrogenase from bacillus cereus
38% identity, 98% coverage: 4:463/468 of query aligns to 17:486/491 of 5gtkA
- active site: N165 (= N149), K188 (= K172), E263 (= E245), C297 (= C279), E394 (= E371), E471 (≠ D448)
- binding nicotinamide-adenine-dinucleotide: I161 (= I145), I162 (≠ T146), P163 (= P147), W164 (= W148), K188 (= K172), E191 (≠ D175), G221 (= G203), G225 (= G207), A226 (= A208), F239 (≠ I221), G241 (= G223), S242 (= S224), T245 (≠ A227), Y248 (≠ Q230), L264 (= L246), C297 (= C279), Q344 (= Q323), R347 (= R326), E394 (= E371), F396 (= F373)
4v37A Crystal structure of betaine aldehyde dehydrogenase from spinach showing a thiohemiacetal with 3-aminopropionaldehyde
38% identity, 95% coverage: 19:464/468 of query aligns to 23:481/495 of 4v37A
- active site: N157 (= N149), K180 (= K172), E255 (= E245), A289 (≠ C279), E388 (= E371), E465 (≠ D448)
- binding 3-aminopropan-1-ol: C448 (≠ I431), W454 (≠ H437)
- binding nicotinamide-adenine-dinucleotide: I153 (= I145), S154 (≠ T146), P155 (= P147), W156 (= W148), N157 (= N149), M162 (= M154), K180 (= K172), S182 (≠ A174), E183 (≠ D175), G213 (= G203), G217 (= G207), A218 (= A208), T232 (= T222), G233 (= G223), S234 (= S224), T237 (≠ A227), E255 (= E245), L256 (= L246), A289 (≠ C279), E388 (= E371), F390 (= F373)
O14293 Putative aldehyde dehydrogenase-like protein C9E9.09c; EC 1.2.1.- from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
38% identity, 98% coverage: 7:463/468 of query aligns to 26:493/503 of O14293
- S248 (= S224) modified: Phosphoserine
Sites not aligning to the query:
- 501 modified: Phosphoserine
Q63639 Retinal dehydrogenase 2; RALDH 2; RalDH2; Aldehyde dehydrogenase family 1 member A2; ALDH1A2; Retinaldehyde-specific dehydrogenase type 2; RALDH(II); EC 1.2.1.36 from Rattus norvegicus (Rat) (see paper)
38% identity, 96% coverage: 19:466/468 of query aligns to 55:512/518 of Q63639
O94788 Retinal dehydrogenase 2; RALDH 2; RalDH2; Aldehyde dehydrogenase family 1 member A2; ALDH1A2; Retinaldehyde-specific dehydrogenase type 2; RALDH(II); EC 1.2.1.36 from Homo sapiens (Human) (see 6 papers)
37% identity, 96% coverage: 19:466/468 of query aligns to 55:512/518 of O94788
- A110 (= A71) to V: in dbSNP:rs35365164
- Q182 (= Q144) to K: in DIH4; decreased retinoic acid biosynthetic process
- IPW 184:186 (≠ TPW 146:148) binding NAD(+)
- KPAE 210:213 (≠ KPAD 172:175) binding NAD(+)
- STE 264:266 (≠ STR 224:226) binding NAD(+)
- C320 (= C279) active site, Nucleophile
- R347 (≠ L306) to H: in DIH4; decreased expression; dbSNP:rs141245344
- V348 (≠ T307) to I: in dbSNP:rs4646626
- KQYNK 366:370 (≠ AQLER 322:326) binding NAD(+)
- A383 (= A338) to T: in DIH4; uncertain significance; dbSNP:rs749124508
- E417 (= E371) binding NAD(+)
- E436 (= E390) to K: in dbSNP:rs34744827
- S461 (= S415) to Y: in DIH4; decreased retinoic acid biosynthetic process
Sites not aligning to the query:
- 50 E → G: in dbSNP:rs34266719
6b5hA Aldh1a2 liganded with NAD and 1-(4-cyanophenyl)-n-(3-fluorophenyl)-3- [4-(methylsulfonyl)phenyl]-1h-pyrazole-4-carboxamide (compound cm121) (see paper)
37% identity, 96% coverage: 19:466/468 of query aligns to 29:486/492 of 6b5hA
- active site: N161 (= N149), E260 (= E245), C294 (= C279), E468 (≠ D448)
- binding 1-(4-cyanophenyl)-N-(3-fluorophenyl)-3-[4-(methylsulfonyl)phenyl]-1H-pyrazole-4-carboxamide: V112 (≠ L99), G116 (≠ R103), F162 (≠ Y150), W169 (= W157), Q284 (≠ L269), F288 (= F273), T295 (= T280), N449 (≠ Q429), L451 (≠ I431), N452 (≠ P432), F457 (≠ H437)
- binding nicotinamide-adenine-dinucleotide: I157 (= I145), I158 (≠ T146), W160 (= W148), N161 (= N149), K184 (= K172), G217 (= G203), G221 (= G207), F235 (≠ I221), T236 (= T222), G237 (= G223), S238 (= S224), V241 (≠ A227), E260 (= E245), L261 (= L246), C294 (= C279), F393 (= F373)
6b5gA Aldh1a2 liganded with NAD and (3-ethoxythiophen-2-yl){4-[4-nitro-3- (pyrrolidin-1-yl)phenyl]piperazin-1-yl}methanone (compound 6-118) (see paper)
37% identity, 96% coverage: 19:466/468 of query aligns to 29:486/492 of 6b5gA
- active site: N161 (= N149), E260 (= E245), C294 (= C279), E468 (≠ D448)
- binding (3-ethoxythiophen-2-yl){4-[4-nitro-3-(pyrrolidin-1-yl)phenyl]piperazin-1-yl}methanone: F162 (≠ Y150), L165 (≠ M153), W169 (= W157), F288 (= F273), C293 (≠ D278), C294 (= C279), T295 (= T280), N449 (≠ Q429), L451 (≠ I431)
- binding nicotinamide-adenine-dinucleotide: I157 (= I145), I158 (≠ T146), P159 (= P147), W160 (= W148), N161 (= N149), M166 (= M154), K184 (= K172), E187 (≠ D175), G217 (= G203), G221 (= G207), F235 (≠ I221), T236 (= T222), G237 (= G223), S238 (= S224), V241 (≠ A227), E260 (= E245), L261 (= L246), C294 (= C279), E391 (= E371), F393 (= F373)
6aljA Aldh1a2 liganded with NAD and compound win18,446 (see paper)
37% identity, 96% coverage: 19:466/468 of query aligns to 29:486/492 of 6aljA
- active site: N161 (= N149), E260 (= E245), C294 (= C279), E468 (≠ D448)
- binding N,N'-(octane-1,8-diyl)bis(2,2-dichloroacetamide): G116 (≠ R103), F162 (≠ Y150), L165 (≠ M153), M166 (= M154), W169 (= W157), E260 (= E245), C293 (≠ D278), C294 (= C279), L451 (≠ I431), N452 (≠ P432), A453 (= A433)
- binding nicotinamide-adenine-dinucleotide: I157 (= I145), I158 (≠ T146), P159 (= P147), W160 (= W148), N161 (= N149), K184 (= K172), E187 (≠ D175), G217 (= G203), G221 (= G207), F235 (≠ I221), G237 (= G223), S238 (= S224), V241 (≠ A227), Q341 (= Q323), K344 (≠ R326), E391 (= E371), F393 (= F373)
7radA Crystal structure analysis of aldh1b1
38% identity, 98% coverage: 7:464/468 of query aligns to 16:485/493 of 7radA
- binding nicotinamide-adenine-dinucleotide: I158 (= I145), I159 (≠ T146), P160 (= P147), W161 (= W148), N162 (= N149), M167 (= M154), K185 (= K172), E188 (≠ D175), G218 (= G203), G222 (= G207), A223 (= A208), T237 (= T222), G238 (= G223), S239 (= S224), V242 (≠ A227), E261 (= E245), L262 (= L246), C295 (= C279), E392 (= E371), F394 (= F373)
- binding 3-(2-methoxyphenyl)-1-(4-phenylphenyl)-6,7,8,9-tetrahydro-5~{H}-imidazo[1,2-a][1,3]diazepine: L113 (= L99), E117 (≠ R103), F163 (≠ Y150), E285 (≠ L269), F289 (= F273), N450 (≠ Q429), V452 (≠ I431)
Query Sequence
>WP_058932572.1 NCBI__GCF_001484605.1:WP_058932572.1
MITLKNIINGQAVDAPASLPFFDPATGLQIGSAPDSDAAAVDLAFQAAQQAFKRYKRTTP
GERQAMLLKLADLIEANVDSLLEAEVACTGKPRAATRELEILRGADQLRFFAGACRVVSG
TASTEYVEGFTSSIRREPLGVVAQITPWNYPFMMAIWKIGPALAAGNTLVLKPADTTPWS
TVILGELAQQAFPAGVVNVVCGGRGTGAAMVEHEIPEMVSITGSTRAGAQVMSAAAKTLK
DVHLELGGKAPAIVFADVDIARTAQEIALSAFFNAGQDCTAVTRVLVEQSIHTEFAAALG
AAAAALTVGGDDADLGPLNSAAQLERVEGFMTRLPANATVLSGGKRTGTGYYFEPTVIDG
VFQSDEVVCDEVFGPVLTVQPFATEEEAIELANGTKYALASSVWSENHGVVTRVSMELDF
GAVWINCHQVIPAEAPHGGFKHSGTGKDLSVFGLEDYTRIKSVTTSHR
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory