SitesBLAST
Comparing WP_059151920.1 NCBI__GCF_001046635.1:WP_059151920.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3du4A Crystal structure of 7-keto-8-aminopelargonic acid bound 7,8- diaminopelargonic acid synthase in bacillus subtilis (see paper)
35% identity, 99% coverage: 3:424/427 of query aligns to 6:440/448 of 3du4A
- active site: F17 (= F14), Y146 (= Y146), E217 (= E206), D251 (= D240), A254 (≠ M243), K280 (= K269), A417 (≠ Y401)
- binding 7-keto-8-aminopelargonic acid: L82 (≠ A78), Y146 (= Y146), G315 (≠ S303), S317 (= S305), R410 (= R394)
- binding pyridoxal-5'-phosphate: S112 (= S108), G113 (= G109), A114 (≠ S110), Y146 (= Y146), H147 (= H147), E217 (= E206), D251 (= D240), V253 (= V242), A254 (≠ M243), K280 (= K269), H316 (≠ S304), S317 (= S305)
P53555 L-Lysine--8-amino-7-oxononanoate transaminase; 7,8-diamino-pelargonic acid aminotransferase; DAPA AT; DAPA aminotransferase; 7,8-diaminononanoate synthase; DANS; Diaminopelargonic acid synthase; L-Lysine--8-amino-7-oxononanoate aminotransferase; EC 2.6.1.105 from Bacillus subtilis (strain 168) (see paper)
35% identity, 99% coverage: 3:424/427 of query aligns to 6:440/448 of P53555
- GA 113:114 (≠ GS 109:110) binding pyridoxal 5'-phosphate
- Y146 (= Y146) binding substrate
- K280 (= K269) modified: N6-(pyridoxal phosphate)lysine
- G315 (≠ S303) binding substrate
- HS 316:317 (≠ SS 304:305) binding pyridoxal 5'-phosphate
- R410 (= R394) binding substrate
1mlzA Crystal structure of 7,8-diaminopelargonic acid synthase in complex with the trans-isomer of amiclenomycin. (see paper)
38% identity, 97% coverage: 10:424/427 of query aligns to 13:420/427 of 1mlzA
- active site: Y17 (≠ F14), Y144 (= Y146), E210 (= E206), D244 (= D240), A247 (≠ M243), K273 (= K269), Y397 (= Y401)
- binding pyridoxal-5'-phosphate: G112 (= G109), S113 (= S110), Y144 (= Y146), H145 (= H147), D244 (= D240), I246 (≠ V242), K273 (= K269), P307 (≠ S304), T308 (≠ S305)
- binding trans-amiclenomycin: W52 (= W49), W53 (= W50), Y144 (= Y146), K273 (= K269), R390 (= R394), F392 (≠ L396)
1mlyA Crystal structure of 7,8-diaminopelargonic acid synthase in complex with the cis isomer of amiclenomycin (see paper)
38% identity, 97% coverage: 10:424/427 of query aligns to 13:420/427 of 1mlyA
- active site: Y17 (≠ F14), Y144 (= Y146), E210 (= E206), D244 (= D240), A247 (≠ M243), K273 (= K269), Y397 (= Y401)
- binding cis-amiclenomycin: W52 (= W49), W53 (= W50), K273 (= K269), R390 (= R394), F392 (≠ L396)
- binding pyridoxal-5'-phosphate: G112 (= G109), S113 (= S110), Y144 (= Y146), H145 (= H147), D244 (= D240), I246 (≠ V242), K273 (= K269), P307 (≠ S304), T308 (≠ S305)
1qj3A Crystal structure of 7,8-diaminopelargonic acid synthase in complex with 7-keto-8-aminopelargonic acid (see paper)
38% identity, 97% coverage: 10:424/427 of query aligns to 13:409/416 of 1qj3A
- active site: Y17 (≠ F14), Y144 (= Y146), E201 (= E206), D235 (= D240), A238 (≠ M243), K264 (= K269), Y386 (= Y401)
- binding 7-keto-8-aminopelargonic acid: Y17 (≠ F14), W52 (= W49), Y144 (= Y146), K264 (= K269), R379 (= R394), F381 (≠ L396)
- binding pyridoxal-5'-phosphate: G112 (= G109), S113 (= S110), Y144 (= Y146), H145 (= H147), G146 (= G148), D235 (= D240), I237 (≠ V242), A238 (≠ M243), K264 (= K269)
6erkA Crystal structure of diaminopelargonic acid aminotransferase from psychrobacter cryohalolentis (see paper)
34% identity, 98% coverage: 10:427/427 of query aligns to 14:416/420 of 6erkA
6zhkA Crystal structure of adenosylmethionine-8-amino-7-oxononanoate aminotransferase from methanocaldococcus jannaschii dsm 2661
33% identity, 97% coverage: 10:424/427 of query aligns to 13:433/438 of 6zhkA
4w1vA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a thiazole inhibitor (see paper)
37% identity, 97% coverage: 10:422/427 of query aligns to 14:418/425 of 4w1vA
- active site: Y18 (≠ F14), Y147 (= Y146), E210 (= E206), D244 (= D240), A247 (≠ M243), K273 (= K269), Y397 (= Y401)
- binding dimethyl (2R)-5-(3-fluorophenyl)-1H-pyrrolo[1,2-c][1,3]thiazole-6,7-dicarboxylate 2-oxide: P17 (= P13), Y18 (≠ F14), W54 (= W49), M81 (≠ I76), G83 (≠ A78), Y147 (= Y146), G306 (≠ S303), P307 (≠ S304), T308 (≠ S305), F392 (≠ L396)
- binding pyridoxal-5'-phosphate: G114 (= G109), S115 (= S110), Y147 (= Y146), H148 (= H147), E210 (= E206), D244 (= D240), I246 (≠ V242), K273 (= K269)
4cxrA Mycobaterium tuberculosis transaminase bioa complexed with 1-(1,3- benzothiazol-2-yl)methanamine (see paper)
37% identity, 97% coverage: 10:422/427 of query aligns to 14:418/425 of 4cxrA
- active site: Y18 (≠ F14), Y147 (= Y146), E210 (= E206), D244 (= D240), A247 (≠ M243), K273 (= K269), Y397 (= Y401)
- binding 1-(1,3-benzothiazol-2-yl)methanamine: Y18 (≠ F14), W54 (= W49), W55 (= W50), A216 (= A212)
- binding pyridoxal-5'-phosphate: G114 (= G109), S115 (= S110), Y147 (= Y146), H148 (= H147), E210 (= E206), D244 (= D240), I246 (≠ V242), K273 (= K269), P307 (≠ S304), T308 (≠ S305)
4cxqA Mycobaterium tuberculosis transaminase bioa complexed with substrate kapa (see paper)
38% identity, 97% coverage: 10:422/427 of query aligns to 14:420/427 of 4cxqA
- active site: Y18 (≠ F14), Y149 (= Y146), E212 (= E206), D246 (= D240), A249 (≠ M243), K275 (= K269), Y399 (= Y401)
- binding 7-keto-8-aminopelargonic acid: W56 (= W49), Y149 (= Y146), G308 (≠ S303), T310 (≠ S305), R392 (= R394)
- binding pyridoxal-5'-phosphate: G116 (= G109), S117 (= S110), Y149 (= Y146), H150 (= H147), G151 (= G148), E212 (= E206), D246 (= D240), I248 (≠ V242), K275 (= K269), P309 (≠ S304), T310 (≠ S305)
6wnnA Bacillus subtilis bioa in complex with amino donor l-lys
32% identity, 99% coverage: 3:424/427 of query aligns to 3:412/420 of 6wnnA
- active site: F14 (= F14), Y143 (= Y146), D223 (= D240), K252 (= K269)
- binding (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid: F14 (= F14), W51 (= W50), S109 (= S108), G110 (= G109), A111 (≠ S110), Y143 (= Y146), H144 (= H147), D223 (= D240), V225 (= V242), K252 (= K269), R382 (= R394)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: H288 (≠ S304), S289 (= S305)
3tfuA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, post-reaction complex with a 3,6- dihydropyrid-2-one heterocycle inhibitor (see paper)
38% identity, 97% coverage: 10:422/427 of query aligns to 15:412/417 of 3tfuA
- active site: Y19 (≠ F14), Y151 (= Y146), E204 (= E206), D238 (= D240), A241 (≠ M243), K267 (= K269), Y391 (= Y401)
- binding [5-hydroxy-4-({[6-(3-hydroxypropyl)-2-oxo-1,2-dihydropyridin-3-yl]amino}methyl)-6-methylpyridin-3-yl]methyl dihydrogen phosphate: W58 (= W49), G118 (= G109), S119 (= S110), Y151 (= Y146), H152 (= H147), D238 (= D240), I240 (≠ V242), K267 (= K269), P301 (≠ S304), T302 (≠ S305)
6ge8B Crystal structure of mycobacterium tuberculosis bioa
38% identity, 97% coverage: 10:422/427 of query aligns to 15:414/420 of 6ge8B
- binding [(2~{S})-3-(1~{H}-indol-3-yl)-1-[(2~{E})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylidene]hydrazinyl]-1-oxidanylidene-propan-2-yl]azanium: W58 (= W49), G118 (= G109), S119 (= S110), Y151 (= Y146), H152 (= H147), A212 (= A212), D240 (= D240), I242 (≠ V242), K269 (= K269), P303 (≠ S304), T304 (≠ S305)
- binding magnesium ion: H152 (= H147), G153 (= G148), A158 (= A153), C162 (≠ G157)
6ge8A Crystal structure of mycobacterium tuberculosis bioa
38% identity, 97% coverage: 10:422/427 of query aligns to 15:416/422 of 6ge8A
- binding [(2~{S})-3-(1~{H}-indol-3-yl)-1-[(2~{E})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylidene]hydrazinyl]-1-oxidanylidene-propan-2-yl]azanium: Y19 (≠ F14), W58 (= W49), G118 (= G109), S119 (= S110), Y151 (= Y146), H152 (= H147), E208 (= E206), D242 (= D240), I244 (≠ V242), K271 (= K269), P305 (≠ S304), T306 (≠ S305)
3dodA Crystal structure of plp bound 7,8-diaminopelargonic acid synthase in bacillus subtilis (see paper)
32% identity, 99% coverage: 3:424/427 of query aligns to 4:409/417 of 3dodA
- active site: F15 (= F14), E186 (= E206), D220 (= D240), A223 (≠ M243), K249 (= K269), A386 (≠ Y401)
- binding pyridoxal-5'-phosphate: W52 (= W50), S110 (= S108), G111 (= G109), A112 (≠ S110), D220 (= D240), V222 (= V242), K249 (= K269), H285 (≠ S304), S286 (= S305)
P9WQ81 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; 7,8-diamino-pelargonic acid aminotransferase; DAPA AT; DAPA aminotransferase; 7,8-diaminononanoate synthase; DANS; 7,8-diaminopelargonic acid synthase; DAPAS; Diaminopelargonic acid synthase; EC 2.6.1.62 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
38% identity, 97% coverage: 10:422/427 of query aligns to 21:428/437 of P9WQ81
- Y25 (≠ F14) mutation to A: Does not show detectable activity at 335 nm with SAM, even up to concentrations of 3 mM, and shows approximately 70% reduced activity with high concentrations of DAPA (0.5 mM).
- W64 (= W49) binding S-adenosyl-L-methionine
- Y157 (= Y146) binding S-adenosyl-L-methionine
- K283 (= K269) modified: N6-(pyridoxal phosphate)lysine
- G316 (≠ S303) binding S-adenosyl-L-methionine
5kgtA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with an inhibitor optimized from hts lead: 1-[4-[4-(3-chlorophenyl)carbonylpiperidin-1- yl]phenyl]ethanone (see paper)
38% identity, 97% coverage: 10:422/427 of query aligns to 14:421/429 of 5kgtA
- active site: Y18 (≠ F14), Y150 (= Y146), E213 (= E206), D247 (= D240), A250 (≠ M243), K276 (= K269), Y400 (= Y401)
- binding 1-[4-[4-(3-chlorophenyl)carbonylpiperidin-1-yl]phenyl]ethanone: M84 (≠ I76), G86 (≠ A78), G309 (≠ S303), T311 (≠ S305)
- binding pyridoxal-5'-phosphate: S116 (= S108), G117 (= G109), S118 (= S110), Y150 (= Y146), H151 (= H147), G152 (= G148), E213 (= E206), D247 (= D240), I249 (≠ V242), K276 (= K269)
5kgsA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with an inhibitor optimized from hts lead: 5-[4-(1,3-benzodioxol-5-ylcarbonyl)piperazin-1-yl]-2, 3-dihydroinden-1-one (see paper)
38% identity, 97% coverage: 10:422/427 of query aligns to 14:421/429 of 5kgsA
- active site: Y18 (≠ F14), Y150 (= Y146), E213 (= E206), D247 (= D240), A250 (≠ M243), K276 (= K269), Y400 (= Y401)
- binding 5-[4-(1,3-benzodioxol-5-ylcarbonyl)piperazin-1-yl]-2,3-dihydroinden-1-one: P17 (= P13), Y18 (≠ F14), W57 (= W49), M84 (≠ I76), G86 (≠ A78), Y150 (= Y146), D162 (vs. gap), G165 (vs. gap), G166 (= G157), P310 (≠ S304), T311 (≠ S305), F395 (≠ L396)
- binding pyridoxal-5'-phosphate: G117 (= G109), S118 (= S110), Y150 (= Y146), H151 (= H147), G152 (= G148), E213 (= E206), D247 (= D240), I249 (≠ V242), K276 (= K269)
4xjpA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with an inhibitor optimized from hts lead (see paper)
38% identity, 97% coverage: 10:422/427 of query aligns to 14:421/429 of 4xjpA
- active site: Y18 (≠ F14), Y150 (= Y146), E213 (= E206), D247 (= D240), A250 (≠ M243), K276 (= K269), Y400 (= Y401)
- binding 1-{4-[4-(1,3-benzodioxol-5-ylcarbonyl)piperazin-1-yl]phenyl}ethanone: P17 (= P13), Y18 (≠ F14), W57 (= W49), M84 (≠ I76), G86 (≠ A78), Y150 (= Y146), G165 (vs. gap), G166 (= G157), A219 (= A212), G220 (= G213), G309 (≠ S303), F395 (≠ L396)
- binding pyridoxal-5'-phosphate: G117 (= G109), S118 (= S110), Y150 (= Y146), H151 (= H147), G152 (= G148), E213 (= E206), D247 (= D240), I249 (≠ V242), K276 (= K269), P310 (≠ S304), T311 (≠ S305)
4xjmA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a hts lead compound
38% identity, 97% coverage: 10:422/427 of query aligns to 14:421/429 of 4xjmA
- active site: Y18 (≠ F14), Y150 (= Y146), E213 (= E206), D247 (= D240), A250 (≠ M243), K276 (= K269), Y400 (= Y401)
- binding 3-{1-[(5-acetylthiophen-2-yl)carbonyl]piperidin-4-yl}-N-(3-methoxyphenyl)propanamide: P17 (= P13), Y18 (≠ F14), W57 (= W49), M84 (≠ I76), G86 (≠ A78), Y150 (= Y146), M158 (= M154), G165 (vs. gap), G166 (= G157), M167 (≠ Q158), W171 (≠ F162), M307 (≠ F301), G309 (≠ S303), T311 (≠ S305)
- binding pyridoxal-5'-phosphate: G117 (= G109), S118 (= S110), Y150 (= Y146), H151 (= H147), G152 (= G148), E213 (= E206), D247 (= D240), I249 (≠ V242), K276 (= K269), P310 (≠ S304), T311 (≠ S305)
Query Sequence
>WP_059151920.1 NCBI__GCF_001046635.1:WP_059151920.1
MTLPPAASPIWHPFTQHGLGEPIPLVTHAEGALLHTADGRTVIDAVSSWWVTTHGHCHPR
IMAAVAEQAQKLDQLIFAGWTHEPAEAVAAGLTAIMPPELTRVFFSDSGSTSVEVALKMA
LGYWHANTPANGGTPRHRIVVMEHSYHGDTIGAMSVGQRGVFNQPYDPLLFDVGRIPFPA
AGAEQETLDALEALCRQTDTAALIVEPLVLGAGGMLIYGAETLKAMADICARYGVLFIAD
EVMTGWGRTGTLLACEQAGVVPDILCLSKGLTGGSLPLAVTMASEAIFAAHWSTDRARMF
FHSSSYTANPIACAAAAANLAIWREEPVMECVADLGRRQSAWLEKLGRFCHFDNPRALGT
IAALDLRTRGEGGYMDGLAPELMAFFRSRDILLRPLGNTVYVMPPYCITDDQLDEVWNAI
GEAVISF
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory