SitesBLAST
Comparing WP_061945734.1 NCBI__GCF_001584185.1:WP_061945734.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
1e3jA Ketose reductase (sorbitol dehydrogenase) from silverleaf whitefly (see paper)
30% identity, 97% coverage: 12:336/336 of query aligns to 13:346/348 of 1e3jA
- active site: C38 (= C37), G39 (= G38), S40 (≠ T39), H43 (= H42), H63 (= H59), E64 (= E60), C93 (= C88), C96 (= C91), C99 (= C94), C107 (= C102), T111 (≠ Q106), P150 (≠ F143), G154 (= G147), K341 (= K331)
- binding phosphate ion: A174 (= A167), A196 (≠ D189), R197 (≠ T190), S198 (≠ R191), R201 (= R194)
- binding zinc ion: C38 (= C37), H63 (= H59), E64 (= E60), C93 (= C88), C96 (= C91), C99 (= C94), C107 (= C102)
2ejvA Crystal structure of threonine 3-dehydrogenase complexed with NAD+
31% identity, 96% coverage: 12:335/336 of query aligns to 13:340/343 of 2ejvA
- active site: C38 (= C37), G39 (= G38), T40 (= T39), H43 (= H42), H63 (= H59), E64 (= E60), C93 (= C88), C96 (= C91), C99 (= C94), C107 (= C102), Q111 (= Q106), P149 (≠ F143), A153 (≠ G147), K336 (= K331)
- binding nicotinamide-adenine-dinucleotide: G172 (= G166), G174 (= G168), P175 (= P169), I176 (= I170), S195 (≠ L188), D196 (= D189), P197 (≠ T190), R201 (= R194), F238 (≠ A233), S239 (≠ T234), N241 (= N236), A244 (= A239), L261 (≠ V256), G262 (≠ S257), I263 (= I258)
- binding zinc ion: C38 (= C37), H63 (= H59), E64 (= E60), C96 (= C91), C99 (= C94), C107 (= C102)
2dq4A Crystal structure of threonine 3-dehydrogenase
31% identity, 96% coverage: 12:335/336 of query aligns to 13:340/343 of 2dq4A
- active site: C38 (= C37), G39 (= G38), T40 (= T39), H43 (= H42), H63 (= H59), E64 (= E60), C93 (= C88), C96 (= C91), C99 (= C94), C107 (= C102), Q111 (= Q106), P149 (≠ F143), A153 (≠ G147), K336 (= K331)
- binding zinc ion: C38 (= C37), H63 (= H59), E64 (= E60), C93 (= C88), C96 (= C91), C107 (= C102)
Q5SKS4 L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
31% identity, 96% coverage: 12:335/336 of query aligns to 13:340/343 of Q5SKS4
- C38 (= C37) binding Zn(2+)
- H63 (= H59) binding Zn(2+)
- E64 (= E60) binding Zn(2+)
- C93 (= C88) binding Zn(2+)
- C96 (= C91) binding Zn(2+)
- C99 (= C94) binding Zn(2+)
- C107 (= C102) binding Zn(2+)
- I176 (= I170) binding NAD(+)
- D196 (= D189) binding NAD(+)
- R201 (= R194) binding NAD(+)
- LGI 261:263 (≠ VSI 256:258) binding NAD(+)
- IAG 286:288 (≠ -SR 280:281) binding NAD(+)
4ilkA Crystal structure of short chain alcohol dehydrogenase (rspb) from e. Coli cft073 (efi target efi-506413) complexed with cofactor nadh
31% identity, 96% coverage: 1:322/336 of query aligns to 4:323/337 of 4ilkA
- active site: C40 (= C37), G41 (= G38), S42 (≠ T39), H45 (= H42), H59 (= H59), E60 (= E60), C89 (= C88), C92 (= C91), C95 (= C94), C103 (= C102), A107 (≠ Q106), P145 (≠ F143), A149 (≠ G147)
- binding manganese (ii) ion: C40 (= C37), H59 (= H59), E60 (= E60), E144 (= E142)
- binding 1,4-dihydronicotinamide adenine dinucleotide: G168 (= G166), G170 (= G168), P171 (= P169), I172 (= I170), D193 (= D193), R194 (= R194), R198 (≠ C198), N213 (= N213), A235 (= A233), A236 (≠ T234), C237 (≠ G235), I241 (≠ A239), M258 (≠ V256), F260 (≠ I258)
- binding zinc ion: C89 (= C88), C92 (= C91), C95 (= C94), C103 (= C102)
Sites not aligning to the query:
O58389 L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (see 2 papers)
32% identity, 79% coverage: 1:265/336 of query aligns to 5:275/348 of O58389
- C42 (= C37) binding Zn(2+)
- T44 (= T39) mutation to A: Total loss of enzymatic activity.
- H67 (= H59) binding Zn(2+)
- E68 (= E60) binding Zn(2+)
- C97 (= C88) binding Zn(2+)
- C100 (= C91) binding Zn(2+)
- C103 (= C94) binding Zn(2+)
- C111 (= C102) binding Zn(2+)
- E152 (= E142) mutation E->A,Q: Almost complete loss of enzymatic activity.; mutation to C: 120-fold decrease in catalytic efficiency.; mutation to D: Shows 3-fold higher turnover rate and reduced affinities toward L-threonine and NAD(+), compared to wild-type.; mutation to K: Total loss of enzymatic activity.
- L179 (≠ I170) binding NAD(+)
- E199 (≠ T190) binding NAD(+); mutation to A: Large decrease in affinity for NAD(+).
- R204 (≠ C198) binding NAD(+); mutation to A: Large decrease in affinity for NAD(+).
- LGL 266:268 (≠ VSI 256:258) binding NAD(+)
Sites not aligning to the query:
- 291:292 binding NAD(+)
- 294 R→A: 4000-fold decrease in catalytic efficiency.
2dfvA Hyperthermophilic threonine dehydrogenase from pyrococcus horikoshii (see paper)
32% identity, 79% coverage: 1:265/336 of query aligns to 3:273/346 of 2dfvA
- active site: C40 (= C37), G41 (= G38), T42 (= T39), H45 (= H42), H65 (= H59), E66 (= E60), C95 (= C88), C98 (= C91), C101 (= C94), C109 (= C102), K113 (≠ Q106), P151 (≠ F143), A155 (≠ G147)
- binding nicotinamide-adenine-dinucleotide: G175 (= G168), P176 (= P169), L177 (≠ I170), E197 (≠ T190), P198 (≠ R191), R202 (≠ C198), F241 (≠ A233), S242 (≠ T234), A244 (≠ N236), L264 (≠ V256), G265 (≠ S257), L266 (≠ I258)
- binding zinc ion: C95 (= C88), C101 (= C94), C109 (= C102)
Sites not aligning to the query:
7y9pA Xylitol dehydrogenase s96c/s99c/y102c mutant(thermostabilized form) from pichia stipitis (see paper)
28% identity, 99% coverage: 3:335/336 of query aligns to 5:355/357 of 7y9pA
4ej6A Crystal structure of a putative zinc-binding dehydrogenase (target psi-012003) from sinorhizobium meliloti 1021
30% identity, 99% coverage: 1:334/336 of query aligns to 4:340/343 of 4ej6A
- active site: C40 (= C37), G41 (= G38), T42 (= T39), H45 (= H42), H61 (= H59), E62 (= E60), C91 (= C88), C94 (= C91), C97 (= C94), C105 (= C102), R109 (≠ Q106), P147 (≠ F143), C151 (≠ G147), K337 (= K331)
- binding zinc ion: C91 (= C88), C94 (= C91), C97 (= C94), C105 (= C102)
4ejmA Crystal structure of a putative zinc-binding dehydrogenase (target psi-012003) from sinorhizobium meliloti 1021 bound to NADP
30% identity, 99% coverage: 1:334/336 of query aligns to 4:340/342 of 4ejmA
- active site: C40 (= C37), G41 (= G38), T42 (= T39), H45 (= H42), H61 (= H59), E62 (= E60), C91 (= C88), C94 (= C91), C97 (= C94), C105 (= C102), R109 (≠ Q106), P147 (≠ F143), C151 (≠ G147), K337 (= K331)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G170 (= G166), G172 (= G168), V173 (≠ P169), I174 (= I170), T194 (= T190), R195 (= R191), Q196 (≠ A192), K199 (≠ L195), C240 (≠ A233), E245 (≠ K238), T246 (≠ A239), L263 (≠ V256), V265 (≠ I258), I291 (≠ T285)
- binding zinc ion: C91 (= C88), C94 (= C91), C97 (= C94), C105 (= C102)
P07913 L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Escherichia coli (strain K12) (see paper)
31% identity, 92% coverage: 12:320/336 of query aligns to 13:326/341 of P07913
- C38 (= C37) mutation to D: Shows only 1% of wild-type catalytic activity. This mutant can be stimulated to the wild-type activity level after incubation with Zn(+).; mutation to S: Loss of catalytic activity. This mutant cannot be stimulated to the wild-type activity level after incubation with Zn(+).
5kiaA Crystal structure of l-threonine 3-dehydrogenase from burkholderia thailandensis
30% identity, 100% coverage: 1:336/336 of query aligns to 2:338/339 of 5kiaA
- active site: C37 (= C37), G38 (= G38), T39 (= T39), H42 (= H42), H61 (= H59), E62 (= E60), C91 (= C88), C94 (= C91), C97 (= C94), C105 (= C102), V109 (≠ Q106), P147 (≠ F143), A151 (≠ G147), K333 (= K331)
- binding calcium ion: D146 (≠ E142), N150 (≠ I146), E288 (≠ N282)
- binding zinc ion: C91 (= C88), C94 (= C91), C97 (= C94), C105 (= C102)
P27867 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Rattus norvegicus (Rat) (see paper)
29% identity, 93% coverage: 3:314/336 of query aligns to 11:330/357 of P27867
- C45 (= C37) binding Zn(2+)
- H70 (= H59) binding Zn(2+)
- E71 (= E60) binding Zn(2+)
- E156 (= E142) binding Zn(2+)
- D204 (= D189) binding NAD(+)
- R209 (= R194) binding NAD(+)
- VGM 273:275 (≠ VSI 256:258) binding NAD(+)
- VFR 297:299 (≠ S-R 280:281) binding NAD(+)
A2QAC0 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) (see 2 papers)
31% identity, 92% coverage: 23:331/336 of query aligns to 41:367/386 of A2QAC0
- M70 (≠ Y50) mutation to F: Abolishes enzyme activity.
- DI 213:214 (≠ DT 189:190) mutation to SR: Alters cofactor specificity from NAD to NADP; when associated with T-359.
- Y318 (≠ S280) mutation to F: Increases affinity for D-sorbitol.
- A359 (≠ M323) mutation to T: Alters cofactor specificity from NAD to NADP; when associated with 213-SR-214.
Q96V44 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Hypocrea jecorina (Trichoderma reesei) (see paper)
30% identity, 93% coverage: 23:334/336 of query aligns to 52:373/377 of Q96V44
- DI 224:225 (≠ DT 189:190) mutation to SR: Alters cofactor specificity from NAD to NADP; when associated with T-362.
- A362 (≠ M323) mutation to T: Alters cofactor specificity from NAD to NADP; when associated with 224-SR-225.
3gfbA L-threonine dehydrogenase (tktdh) from the hyperthermophilic archaeon thermococcus kodakaraensis (see paper)
30% identity, 77% coverage: 1:260/336 of query aligns to 3:265/347 of 3gfbA
- active site: C40 (= C37), G41 (= G38), T42 (= T39), H45 (= H42), H65 (= H59), E66 (= E60), C95 (= C88), C98 (= C91), C101 (= C94), C109 (= C102), K113 (≠ Q106), P151 (≠ F143), A155 (≠ G147)
- binding nicotinamide-adenine-dinucleotide: G173 (= G166), G175 (= G168), P176 (= P169), L177 (≠ I170), S196 (≠ D189), E197 (≠ T190), P198 (≠ R191), R202 (≠ L195), F241 (≠ A233), S242 (≠ T234), A244 (≠ N236), L264 (≠ V259), G265 (= G260)
Sites not aligning to the query:
Q5JI69 L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see paper)
30% identity, 77% coverage: 1:260/336 of query aligns to 5:267/350 of Q5JI69
- L179 (≠ I170) binding NAD(+)
- E199 (≠ T190) binding NAD(+)
- R204 (≠ L195) binding NAD(+)
Sites not aligning to the query:
- 266:268 binding NAD(+)
- 291:292 binding NAD(+)
4jbiA 2.35a resolution structure of NADPH bound thermostable alcohol dehydrogenase from pyrobaculum aerophilum (see paper)
31% identity, 94% coverage: 1:315/336 of query aligns to 3:320/333 of 4jbiA
- active site: N41 (≠ C37), P42 (≠ G38), L43 (≠ T39), N46 (≠ H42), S63 (≠ H59), E64 (= E60), C93 (= C88), C96 (= C91), C99 (= C94), C107 (= C102), G111 (≠ N104), I149 (≠ F143), T153 (≠ G147)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: P42 (≠ G38), I149 (≠ F143), T153 (≠ G147), G173 (= G166), T175 (vs. gap), G176 (= G168), N177 (≠ P169), V178 (≠ I170), S197 (≠ D189), R198 (≠ T190), R199 (= R191), P233 (≠ A233), A255 (≠ V256), G256 (vs. gap), L258 (≠ I258), T259 (≠ V259), T281 (≠ R281), G282 (≠ N282)
- binding zinc ion: C93 (= C88), C96 (= C91), C99 (= C94), C107 (= C102)
Sites not aligning to the query:
4jbhA 2.2a resolution structure of cobalt and zinc bound thermostable alcohol dehydrogenase from pyrobaculum aerophilum (see paper)
31% identity, 94% coverage: 1:315/336 of query aligns to 3:320/333 of 4jbhA
- active site: N41 (≠ C37), P42 (≠ G38), L43 (≠ T39), N46 (≠ H42), S63 (≠ H59), E64 (= E60), C93 (= C88), C96 (= C91), C99 (= C94), C107 (= C102), G111 (≠ N104), I149 (≠ F143), T153 (≠ G147)
- binding cobalt (ii) ion: C93 (= C88), C96 (= C91), C99 (= C94), C107 (= C102)
- binding zinc ion: C93 (= C88), C96 (= C91), C99 (= C94), C107 (= C102)
Sites not aligning to the query:
4jbgA 1.75a resolution structure of a thermostable alcohol dehydrogenase from pyrobaculum aerophilum (see paper)
31% identity, 94% coverage: 1:315/336 of query aligns to 3:320/333 of 4jbgA
- active site: N41 (≠ C37), P42 (≠ G38), L43 (≠ T39), N46 (≠ H42), S63 (≠ H59), E64 (= E60), C93 (= C88), C96 (= C91), C99 (= C94), C107 (= C102), G111 (≠ N104), I149 (≠ F143), T153 (≠ G147)
- binding zinc ion: C93 (= C88), C96 (= C91), C99 (= C94), C107 (= C102)
Sites not aligning to the query:
Query Sequence
>WP_061945734.1 NCBI__GCF_001584185.1:WP_061945734.1
MKSLICERPGVLRMEQRPMPVRNPGDVLIRVKRVGICGTDMHIYRGTQPYLDYPRVMGHE
LAGEVVEAPAASGLSTGDTVYVMPYMACGACVACRKGKTNCCTNIQVLGVHRDGGLAEYT
SIPSQFVFKAEGISLDDAAMIEFLAIGAHAVRRAAIQPGQNALVVGAGPIGIAVALFARL
RGAKVCMLDTRADRLQFCREILQIPSTIEVGENDKLQLAEFTQQDFFDVVFDATGNAKAM
ERGFEFVAHGGTYVFVSIVGGNISFSDPEFHKREIALLGSRNATTEDFEEVLAAMRAGLV
PTRSLNTHRTTLDELPAIFSLWMEPSAGVIKAIVDC
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory