Comparing WP_062735322.1 NCBI__GCF_001580365.1:WP_062735322.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
8i3yD Crystal structure of asct from trypanosoma brucei in complex with succinyl-coa.
59% identity, 85% coverage: 5:207/240 of query aligns to 257:459/471 of 8i3yD
Sites not aligning to the query:
8i40A Crystal structure of asct from trypanosoma brucei in complex with coa.
59% identity, 85% coverage: 5:207/240 of query aligns to 253:455/467 of 8i40A
8i3yA Crystal structure of asct from trypanosoma brucei in complex with succinyl-coa.
59% identity, 84% coverage: 7:207/240 of query aligns to 249:449/459 of 8i3yA
Sites not aligning to the query:
Q29551 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; SCOT; 3-oxoacid CoA-transferase 1; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; SCOT-s; Succinate-coenzyme A transferase; Succinyl-CoA:3-oxoacid CoA transferase; EC 2.8.3.5 from Sus scrofa (Pig) (see 3 papers)
54% identity, 93% coverage: 5:226/240 of query aligns to 302:520/520 of Q29551
Sites not aligning to the query:
1o9lA Succinate:coenzyme-a transferase (pig heart)
54% identity, 93% coverage: 5:226/240 of query aligns to 250:468/468 of 1o9lA
Sites not aligning to the query:
3k6mC Dynamic domains of succinyl-coa:3-ketoacid-coenzyme a transferase from pig heart. (see paper)
54% identity, 92% coverage: 5:224/240 of query aligns to 249:465/466 of 3k6mC
Sites not aligning to the query:
3oxoE Succinyl-coa:3-ketoacid coa transferase from pig heart covalently bound to coa (see paper)
54% identity, 89% coverage: 12:224/240 of query aligns to 252:461/462 of 3oxoE
>WP_062735322.1 NCBI__GCF_001580365.1:WP_062735322.1
MSWTRDEMAAIAAVELSDGDYVNLGIGIPTLVANNLPEGVNVVLQSENGVLGMGPFPYEG
EEDPDLINAGKQTITLLPGASIFDSATSFGMIRGGHVKIAILGAMQVSGSGDLANWMIPG
KMVKGMGGAMDLVAGTPRVVVLTEHVTKDGSAKIKTECDLPLTGVGVVDRIVTDLCVFDV
EDGGLVLRSLAPGVTEDEVRAKTEASFRTELQDVTPESVPTESVPTETVSTAPGAAEENR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory