SitesBLAST
Comparing WP_066601622.1 NCBI__GCF_001046645.1:WP_066601622.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3pm9A Crystal structure of a putative dehydrogenase (rpa1076) from rhodopseudomonas palustris cga009 at 2.57 a resolution
46% identity, 98% coverage: 5:473/479 of query aligns to 5:465/465 of 3pm9A
- active site: A149 (= A151), L159 (≠ T161)
- binding flavin-adenine dinucleotide: P69 (= P69), Q70 (= Q70), G71 (= G71), G72 (= G72), N73 (= N73), T74 (= T74), G75 (≠ S75), L76 (≠ M76), G79 (= G79), Q80 (≠ A80), L91 (= L93), L133 (= L135), G134 (= G136), A135 (= A137), C139 (≠ A141), T140 (= T142), G142 (= G144), G143 (= G145), S146 (= S148), T147 (= T149), A149 (= A151), G150 (= G152), E200 (= E202), G201 (= G203), I205 (≠ V207), I206 (≠ V208), E423 (= E431)
6lpxA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-og) (see paper)
36% identity, 96% coverage: 16:474/479 of query aligns to 22:465/466 of 6lpxA
- binding 2-oxoglutaric acid: R333 (= R333), T337 (≠ S337), K348 (≠ Q348), Y379 (≠ F381), H381 (= H383), H388 (= H390), H423 (= H432)
- binding flavin-adenine dinucleotide: W39 (= W33), P75 (= P69), Q76 (= Q70), G77 (= G71), G78 (= G72), N79 (= N73), T80 (= T74), G81 (≠ S75), M82 (= M76), G85 (= G79), S86 (≠ A80), L139 (= L135), G140 (= G136), A141 (= A137), C145 (≠ A141), G149 (= G145), N150 (≠ L146), A152 (≠ S148), T153 (= T149), G157 (= G153), G207 (= G203), I212 (≠ V208), E422 (= E431), N459 (= N468)
- binding zinc ion: H381 (= H383), H388 (= H390), E422 (= E431)
6lpuA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with l-2-hydroxyglutarate (l-2-hg) (see paper)
36% identity, 96% coverage: 16:474/479 of query aligns to 22:465/466 of 6lpuA
- binding flavin-adenine dinucleotide: W39 (= W33), P75 (= P69), G77 (= G71), G78 (= G72), N79 (= N73), T80 (= T74), G81 (≠ S75), G85 (= G79), S86 (≠ A80), L139 (= L135), G140 (= G136), A141 (= A137), C145 (≠ A141), H146 (≠ T142), G148 (= G144), G149 (= G145), N150 (≠ L146), A152 (≠ S148), T153 (= T149), A155 (= A151), E206 (= E202), G207 (= G203), I211 (≠ V207), I212 (≠ V208), E422 (= E431), N459 (= N468)
- binding (2s)-2-hydroxypentanedioic acid: R333 (= R333), T337 (≠ S337), K348 (≠ Q348), Y379 (≠ F381), H381 (= H383), H388 (= H390), H423 (= H432)
- binding zinc ion: H381 (= H383), H388 (= H390), E422 (= E431)
6lpqA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) (see paper)
36% identity, 96% coverage: 16:474/479 of query aligns to 22:465/466 of 6lpqA
- binding flavin-adenine dinucleotide: W39 (= W33), P75 (= P69), G77 (= G71), G78 (= G72), N79 (= N73), T80 (= T74), G81 (≠ S75), G85 (= G79), S86 (≠ A80), L139 (= L135), G140 (= G136), A141 (= A137), C145 (≠ A141), H146 (≠ T142), G149 (= G145), N150 (≠ L146), A152 (≠ S148), T153 (= T149), A155 (= A151), G157 (= G153), E206 (= E202), G207 (= G203), I211 (≠ V207), I212 (≠ V208), E422 (= E431), N459 (= N468)
- binding d-malate: M82 (= M76), R333 (= R333), T337 (≠ S337), K348 (≠ Q348), Y379 (≠ F381), H381 (= H383), H388 (= H390), E422 (= E431), H423 (= H432)
- binding zinc ion: H381 (= H383), H388 (= H390), E422 (= E431)
6lppA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-2-hydroxyglutarate (d-2-hg) (see paper)
36% identity, 96% coverage: 16:474/479 of query aligns to 22:465/466 of 6lppA
- binding (2R)-2-hydroxypentanedioic acid: R333 (= R333), T337 (≠ S337), K348 (≠ Q348), Y379 (≠ F381), H381 (= H383), H388 (= H390), N390 (≠ H392), H423 (= H432)
- binding flavin-adenine dinucleotide: W39 (= W33), P75 (= P69), G77 (= G71), G78 (= G72), N79 (= N73), T80 (= T74), G81 (≠ S75), M82 (= M76), G85 (= G79), S86 (≠ A80), L139 (= L135), G140 (= G136), A141 (= A137), C145 (≠ A141), G149 (= G145), N150 (≠ L146), A152 (≠ S148), T153 (= T149), A155 (= A151), G157 (= G153), G207 (= G203), I212 (≠ V208), E422 (= E431), H423 (= H432)
- binding zinc ion: H381 (= H383), H388 (= H390), E422 (= E431)
6lpnB Crystal structure of human d-2-hydroxyglutarate dehydrogenase in apo form (see paper)
36% identity, 96% coverage: 16:474/479 of query aligns to 23:466/467 of 6lpnB
- binding flavin-adenine dinucleotide: W40 (= W33), P76 (= P69), G78 (= G71), G79 (= G72), N80 (= N73), T81 (= T74), G82 (≠ S75), M83 (= M76), G86 (= G79), S87 (≠ A80), L140 (= L135), A142 (= A137), C146 (≠ A141), H147 (≠ T142), G150 (= G145), N151 (≠ L146), A153 (≠ S148), T154 (= T149), G208 (= G203), I212 (≠ V207), I213 (≠ V208), E423 (= E431), N460 (= N468)
Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens (Human) (see 7 papers)
36% identity, 96% coverage: 16:474/479 of query aligns to 75:518/521 of Q8N465
- S109 (≠ T50) to W: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs142050154
- N127 (≠ V68) to K: in D2HGA1; uncertain significance; complete loss of catalytic activity; dbSNP:rs762857195
- G131 (= G72) to V: in D2HGA1; uncertain significance; complete loss of catalytic activity
- I147 (= I90) to S: in D2HGA1; uncertain significance; severe phenotype; almost complete loss of catalytic activity; dbSNP:rs121434361
- M153 (= M96) to T: in D2HGA1; uncertain significance; significant loss of catalytic activity; to V: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs1432270139
- C172 (≠ V115) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs773735172
- P189 (= P132) to L: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs587783517
- A205 (≠ S148) to V: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs750889931
- A231 (≠ P174) to V: in D2HGA1; uncertain significance; significant loss of catalytic activity
- G233 (= G176) to S: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs374535734
- D375 (≠ N322) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs267606759
- R386 (= R333) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- T390 (≠ S337) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Significantly reduced catalytic activity.
- V399 (≠ A346) to M: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746519212
- K401 (≠ Q348) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- R419 (≠ A366) to H: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs199908032
- A426 (≠ G375) to T: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs146578303
- H434 (= H383) binding Zn(2+); mutation to A: Loss of catalytic activity.
- G436 (= G385) to V: slight reduction in catalytic activity
- N439 (= N388) to D: in D2HGA1; uncertain significance; mild phenotype; moderate reduction in catalytic activity; dbSNP:rs121434362
- H441 (= H390) binding Zn(2+); mutation to A: Loss of catalytic activity.
- N443 (≠ H392) binding (R)-2-hydroxyglutarate; mutation to A: Significantly reduced catalytic activity.
- V444 (= V393) to A: in D2HGA1; uncertain significance; severe phenotype; significant reduction in catalytic activity; dbSNP:rs121434360
- A446 (= A395) to V: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746956176
- E475 (= E431) binding Zn(2+); mutation to A: Loss of catalytic activity.
- H476 (= H432) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- G477 (= G433) to R: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs1453924640
Sites not aligning to the query:
- 15 R → G: in dbSNP:rs4675887
- 169:521 natural variant: Missing (in D2HGA1; uncertain significance)
- 400:521 natural variant: Missing (in D2HGA1; uncertain significance; complete loss of catalytic activity)
P39976 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
32% identity, 94% coverage: 23:473/479 of query aligns to 50:496/496 of P39976