SitesBLAST
Comparing WP_068111138.1 NCBI__GCF_001653335.1:WP_068111138.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
A0R2V7 Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
81% identity, 99% coverage: 4:480/481 of query aligns to 19:490/490 of A0R2V7
- K362 (≠ T347) modified: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-Cter in protein Pup)
1kl2A Crystal structure of serine hydroxymethyltransferase complexed with glycine and 5-formyl tetrahydrofolate (see paper)
49% identity, 87% coverage: 17:436/481 of query aligns to 1:387/405 of 1kl2A
- active site: Y51 (= Y67), E53 (= E69), D197 (= D244), T223 (= T273), K226 (= K276), R232 (= R282)
- binding N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid: E53 (= E69), Y60 (≠ F76), G121 (= G168), H122 (= H169), S172 (= S219), F251 (vs. gap), N341 (= N390)
- binding glycine: S31 (= S47), Y51 (= Y67), Y61 (= Y77), H200 (= H247), R357 (= R406)
- binding pyridoxal-5'-phosphate: S93 (= S109), G94 (= G110), A95 (≠ I111), H122 (= H169), S172 (= S219), D197 (= D244), A199 (= A246), H200 (= H247), T223 (= T273), H225 (= H275), K226 (= K276)
1kl1A Crystal structure of serine hydroxymethyltransferase complexed with glycine (see paper)
49% identity, 87% coverage: 17:436/481 of query aligns to 1:387/405 of 1kl1A
- active site: Y51 (= Y67), E53 (= E69), D197 (= D244), T223 (= T273), K226 (= K276), R232 (= R282)
- binding glycine: S31 (= S47), H122 (= H169), R357 (= R406)
- binding pyridoxal-5'-phosphate: S93 (= S109), G94 (= G110), A95 (≠ I111), H122 (= H169), A171 (≠ Y218), S172 (= S219), D197 (= D244), A199 (= A246), H200 (= H247), T223 (= T273), H225 (= H275), K226 (= K276)
1kkpA Crystal structure of serine hydroxymethyltransferase complexed with serine (see paper)
49% identity, 87% coverage: 17:436/481 of query aligns to 1:387/405 of 1kkpA
- active site: Y51 (= Y67), E53 (= E69), D197 (= D244), T223 (= T273), K226 (= K276), R232 (= R282)
- binding pyridoxal-5'-phosphate: S93 (= S109), G94 (= G110), A95 (≠ I111), H122 (= H169), S172 (= S219), D197 (= D244), A199 (= A246), H200 (= H247), K226 (= K276)
- binding serine: S31 (= S47), H122 (= H169), R357 (= R406)
1kkjA Crystal structure of serine hydroxymethyltransferase from b.Stearothermophilus (see paper)
49% identity, 87% coverage: 17:436/481 of query aligns to 1:387/405 of 1kkjA
- active site: Y51 (= Y67), E53 (= E69), D197 (= D244), T223 (= T273), K226 (= K276), R232 (= R282)
- binding pyridoxal-5'-phosphate: S93 (= S109), G94 (= G110), A95 (≠ I111), H122 (= H169), S172 (= S219), D197 (= D244), A199 (= A246), H200 (= H247), T223 (= T273), H225 (= H275), K226 (= K276)
2vmyA Crystal structure of f351gbsshmt in complex with gly and fthf (see paper)
49% identity, 87% coverage: 17:436/481 of query aligns to 1:387/405 of 2vmyA
- active site: Y51 (= Y67), E53 (= E69), D197 (= D244), T223 (= T273), K226 (= K276), R232 (= R282)
- binding N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid: E53 (= E69), Y60 (≠ F76), Y61 (= Y77), L117 (= L164), G121 (= G168), H122 (= H169), L123 (= L170), S172 (= S219), K248 (≠ R298), F251 (vs. gap), N341 (= N390), S349 (≠ G398), P350 (≠ A399), G351 (≠ W400), R357 (= R406)
- binding glycine: S31 (= S47), Y51 (= Y67), Y61 (= Y77), H200 (= H247), K226 (= K276), R357 (= R406)
- binding pyridoxal-5'-phosphate: Y51 (= Y67), S93 (= S109), G94 (= G110), A95 (≠ I111), H122 (= H169), S172 (= S219), D197 (= D244), A199 (= A246), H200 (= H247), T223 (= T273), K226 (= K276), G257 (= G306)
2vmxA Crystal structure of f351gbsshmt in complex with l-allo-thr (see paper)
49% identity, 87% coverage: 17:436/481 of query aligns to 1:387/405 of 2vmxA
- active site: Y51 (= Y67), E53 (= E69), D197 (= D244), T223 (= T273), K226 (= K276), R232 (= R282)
- binding allo-threonine: S31 (= S47), H122 (= H169), H200 (= H247), R357 (= R406)
- binding pyridoxal-5'-phosphate: S93 (= S109), G94 (= G110), A95 (≠ I111), H122 (= H169), S172 (= S219), D197 (= D244), A199 (= A246), H200 (= H247), T223 (= T273), K226 (= K276)
6ymdA Crystal structure of serine hydroxymethyltransferase from aphanothece halophytica in the covalent complex with malonate (see paper)
42% identity, 96% coverage: 17:478/481 of query aligns to 4:417/420 of 6ymdA
- active site: Y54 (= Y67), E56 (= E69), D200 (= D244), T226 (= T273), K229 (= K276), R235 (= R282)
- binding malonate ion: S34 (= S47), Y54 (= Y67), E56 (= E69), Y64 (= Y77), H125 (= H169), H203 (= H247), K229 (= K276), R361 (= R406)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: Y54 (= Y67), S96 (= S109), G97 (= G110), A98 (≠ I111), H125 (= H169), Y174 (= Y218), S175 (= S219), D200 (= D244), A202 (= A246), T226 (= T273), K229 (= K276), G261 (= G306)
6ymfA Crystal structure of serine hydroxymethyltransferase from aphanothece halophytica in the plp-serine external aldimine state (see paper)
42% identity, 96% coverage: 17:478/481 of query aligns to 4:417/418 of 6ymfA
- active site: Y54 (= Y67), E56 (= E69), D200 (= D244), T226 (= T273), K229 (= K276), R235 (= R282)
- binding [3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-ylmethyl]-serine: S34 (= S47), S96 (= S109), G97 (= G110), A98 (≠ I111), H125 (= H169), S175 (= S219), D200 (= D244), A202 (= A246), H203 (= H247), T226 (= T273), K229 (= K276), R361 (= R406)
9bowA X-ray structure of thermus thermophilus serine hydroxymethyltransferase with plp-l-ser external aldimine and 5- formyltetrahydrofolate (folinic acid) (see paper)
50% identity, 81% coverage: 38:429/481 of query aligns to 17:376/402 of 9bowA
- binding N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid: E48 (= E69), Y55 (≠ F76), F247 (vs. gap)
- binding (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine: Y46 (= Y67), E48 (= E69), Y56 (= Y77), G252 (= G305)
- binding serine: S26 (= S47), H195 (= H247), K221 (= K276), R353 (= R406)
9bohA Serine hydroxymethyltransferase (see paper)
50% identity, 81% coverage: 38:429/481 of query aligns to 17:376/402 of 9bohA
8suiB Joint x-ray/neutron structure of thermus thermophilus serine hydroxymethyltransferase (tthshmt) in internal aldimine state with l- ser bound in a pre-michalis complex (see paper)
50% identity, 81% coverage: 38:429/481 of query aligns to 17:376/402 of 8suiB
8ssyA Room-temperature x-ray structure of thermus thermophilus serine hydroxymethyltransferase (shmt) bound with d-ser in a pseudo- michaelis complex (see paper)
50% identity, 81% coverage: 38:429/481 of query aligns to 17:376/402 of 8ssyA
2dkjA Crystal structure of t.Th.Hb8 serine hydroxymethyltransferase
50% identity, 81% coverage: 38:429/481 of query aligns to 17:376/402 of 2dkjA
- active site: Y46 (= Y67), E48 (= E69), D192 (= D244), T218 (= T273), K221 (= K276), R227 (= R282)
- binding pyridoxal-5'-phosphate: S88 (= S109), G89 (= G110), S90 (≠ I111), H117 (= H169), S167 (= S219), D192 (= D244), A194 (= A246), H220 (= H275), K221 (= K276)
Q5SI56 Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
50% identity, 81% coverage: 38:429/481 of query aligns to 22:381/407 of Q5SI56
- Y51 (= Y67) binding pyridoxal 5'-phosphate
- GS 94:95 (≠ GI 110:111) binding pyridoxal 5'-phosphate
- S172 (= S219) binding pyridoxal 5'-phosphate
- H200 (= H247) binding pyridoxal 5'-phosphate
- H225 (= H275) binding pyridoxal 5'-phosphate
- K226 (= K276) modified: N6-(pyridoxal phosphate)lysine
- G258 (= G306) binding pyridoxal 5'-phosphate
4n0wA X-ray crystal structure of a serine hydroxymethyltransferase from burkholderia cenocepacia with covalently attached pyridoxal phosphate
44% identity, 97% coverage: 11:475/481 of query aligns to 1:415/416 of 4n0wA
- active site: Y57 (= Y67), E59 (= E69), D202 (= D244), T228 (= T273), K231 (= K276), R237 (= R282)
- binding pyridoxal-5'-phosphate: S99 (= S109), G100 (= G110), S101 (≠ I111), H128 (= H169), D202 (= D244), A204 (= A246), H205 (= H247), K231 (= K276)
3pgyB Serine hydroxymethyltransferase from staphylococcus aureus, s95p mutant.
47% identity, 85% coverage: 27:437/481 of query aligns to 11:382/404 of 3pgyB
Sites not aligning to the query:
4ot8A X-ray crystal structure of serine hydroxymethyl transferase from burkholderia cenocepacia bound to plp and serine
44% identity, 96% coverage: 13:475/481 of query aligns to 1:413/414 of 4ot8A
- active site: Y55 (= Y67), E57 (= E69), D200 (= D244), T226 (= T273), K229 (= K276), R235 (= R282)
- binding pyridoxal-5'-phosphate: S97 (= S109), G98 (= G110), S99 (≠ I111), H126 (= H169), D200 (= D244), A202 (= A246), H203 (= H247), K229 (= K276)
- binding serine: S35 (= S47), E57 (= E69), Y65 (= Y77), H126 (= H169), H203 (= H247), R360 (= R406)
4otlA X-ray crystal structure of serine hydroxymethyl transferase from burkholderia cenocepacia bound to plp and glycine
44% identity, 95% coverage: 20:475/481 of query aligns to 3:408/409 of 4otlA
- active site: Y50 (= Y67), E52 (= E69), D195 (= D244), T221 (= T273), K224 (= K276), R230 (= R282)
- binding glycine: S30 (= S47), Y50 (= Y67), Y60 (= Y77), H121 (= H169), K224 (= K276), R355 (= R406)
- binding pyridoxal-5'-phosphate: S92 (= S109), G93 (= G110), S94 (≠ I111), H121 (= H169), S170 (= S219), D195 (= D244), A197 (= A246), H198 (= H247), K224 (= K276)
7x5oB Crystal structure of e. Faecium shmt in complex with me-thf and plp- gly (see paper)
44% identity, 94% coverage: 22:475/481 of query aligns to 5:411/412 of 7x5oB
- binding n-glycine-[3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-yl-methane]: S30 (= S47), Y50 (= Y67), Y60 (= Y77), S92 (= S109), G93 (= G110), S94 (≠ I111), H121 (= H169), S171 (= S219), D196 (= D244), A198 (= A246), H199 (= H247), K225 (= K276), R358 (= R406)
- binding n-[4-({[(6s)-2-amino-4-hydroxy-5-methyl-5,6,7,8-tetrahydropteridin-6-yl]methyl}amino)benzoyl]-l-glutamic acid: E52 (= E69), Y59 (≠ F76), L116 (= L164), G119 (= G167), G120 (= G168), H121 (= H169), S171 (= S219), P252 (= P301), N342 (= N390), P351 (≠ A399)
Query Sequence
>WP_068111138.1 NCBI__GCF_001653335.1:WP_068111138.1
MNDDLSRLSSSAYSQALEVIASVEPRIAEATRAELADQRASLKLIASENYASPAVLMTMG
TWFSDKYAEGTVGHRFYAGCQNVDTVESIAAEHARELFGAEYAYVQPHSGIDANLVAFWS
ILAHRVEGPWLEKAQAKNVNELTDADWESLRKELGNQRLLGMSLDAGGHLTHGFRPNISG
KMFHQQQYGTDPTTGLLDYDAVAAKAREFKPLVLVAGYSAYPRRVDFAKMREIADEVGAT
LMVDMAHFAGLVAGGVFTGDENPVPHAHVVTTTTHKSLRGPRGGMVLATEEYAPSVDRGC
PMVLGGPLSHVMAAKAVAFAEARQDSFRTYAQQVADNAKSLAEGFLTRGADLVTGGTDNH
LVLLDVSKYGLTGRQAETALLDAGVVTNRNSVPADPNGAWYTSGIRLGTPALTTRGFGHD
EFDTVADLIVDVLSNTQAGTTKAGGPSKASYVLGDGVADRVKAASAEMLDKHPLYPGLEL
S
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory