SitesBLAST
Comparing WP_068167469.1 NCBI__GCF_001592305.1:WP_068167469.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
P33221 Formate-dependent phosphoribosylglycinamide formyltransferase; 5'-phosphoribosylglycinamide transformylase 2; Formate-dependent GAR transformylase; GAR transformylase 2; GART 2; GAR transformylase T; Non-folate glycinamide ribonucleotide transformylase; Phosphoribosylglycinamide formyltransferase 2; EC 6.3.1.21 from Escherichia coli (strain K12) (see 5 papers)
59% identity, 99% coverage: 1:396/400 of query aligns to 1:389/392 of P33221
- M1 (= M1) modified: Initiator methionine, Removed
- EL 22:23 (= EL 22:23) binding N(1)-(5-phospho-beta-D-ribosyl)glycinamide
- E82 (= E82) binding N(1)-(5-phospho-beta-D-ribosyl)glycinamide
- R114 (= R115) binding ATP
- K155 (= K157) binding ATP
- SSGKGQ 160:165 (= SSGKGQ 162:167) binding ATP
- G162 (= G164) mutation to I: Strong decrease in the reaction rate for the conversion of formate to FGAR and in the affinity for formate. 3- and 2-fold decrease in the affinity for ATP and GAR, respectively.
- K179 (≠ D181) modified: N6-acetyllysine
- EGVV 195:198 (≠ EGFI 197:200) binding ATP
- E203 (= E205) binding ATP
- E267 (= E274) binding Mg(2+)
- E279 (= E286) binding Mg(2+)
- D286 (= D293) binding N(1)-(5-phospho-beta-D-ribosyl)glycinamide
- K355 (= K362) binding N(1)-(5-phospho-beta-D-ribosyl)glycinamide
- RR 362:363 (= RR 369:370) binding N(1)-(5-phospho-beta-D-ribosyl)glycinamide
1kjiA Crystal structure of glycinamide ribonucleotide transformylase in complex with mg-amppcp (see paper)
58% identity, 99% coverage: 2:396/400 of query aligns to 1:386/389 of 1kjiA
- active site: E114 (= E116), K154 (= K157), S159 (= S162), G161 (= G164), E264 (= E274), E276 (= E286), D283 (= D293), T284 (= T294), R360 (= R370)
- binding phosphomethylphosphonic acid adenylate ester: R113 (= R115), I152 (= I155), K154 (= K157), S159 (= S162), S160 (= S163), G161 (= G164), Q164 (= Q167), E192 (= E197), V195 (≠ I200), E200 (= E205), Q222 (= Q232), E264 (= E274), F266 (= F276), E276 (= E286)
- binding magnesium ion: E264 (= E274), E276 (= E286)
1ez1A Structure of escherichia coli purt-encoded glycinamide ribonucleotide transformylase complexed with mg, amppnp, and gar (see paper)
58% identity, 99% coverage: 2:396/400 of query aligns to 1:386/389 of 1ez1A
- active site: E114 (= E116), K154 (= K157), S159 (= S162), G161 (= G164), E264 (= E274), E276 (= E286), D283 (= D293), T284 (= T294), R360 (= R370)
- binding phosphoaminophosphonic acid-adenylate ester: R113 (= R115), I152 (= I155), K154 (= K157), S159 (= S162), S160 (= S163), G161 (= G164), E192 (= E197), V194 (≠ F199), V195 (≠ I200), F197 (= F202), E200 (= E205), Q222 (= Q232), E264 (= E274), F266 (= F276), E276 (= E286)
- binding glycinamide ribonucleotide: G20 (= G21), E21 (= E22), L22 (= L23), E81 (= E82), I82 (= I83), S160 (= S163), D283 (= D293), K352 (= K362), R359 (= R369), R360 (= R370)
- binding magnesium ion: E264 (= E274), E276 (= E286)
1eyzA Structure of escherichia coli purt-encoded glycinamide ribonucleotide transformylase complexed with mg and amppnp (see paper)
58% identity, 99% coverage: 2:396/400 of query aligns to 1:386/389 of 1eyzA
- active site: E114 (= E116), K154 (= K157), S159 (= S162), G161 (= G164), E264 (= E274), E276 (= E286), D283 (= D293), T284 (= T294), R360 (= R370)
- binding phosphoaminophosphonic acid-adenylate ester: R113 (= R115), I152 (= I155), K154 (= K157), S159 (= S162), S160 (= S163), G161 (= G164), Q164 (= Q167), E192 (= E197), V195 (≠ I200), F197 (= F202), E200 (= E205), E264 (= E274), F266 (= F276), E276 (= E286)
- binding magnesium ion: E264 (= E274), E276 (= E286)
1kjqA Crystal structure of glycinamide ribonucleotide transformylase in complex with mg-adp (see paper)
58% identity, 99% coverage: 2:396/400 of query aligns to 1:385/388 of 1kjqA
- active site: E114 (= E116), K154 (= K157), E263 (= E274), E275 (= E286), D282 (= D293), T283 (= T294), R359 (= R370)
- binding adenosine-5'-diphosphate: R113 (= R115), I152 (= I155), K154 (= K157), E191 (= E197), V193 (≠ F199), V194 (≠ I200), F196 (= F202), E199 (= E205), Q221 (= Q232), F265 (= F276), E275 (= E286)
- binding magnesium ion: E263 (= E274), E275 (= E286)
1kjjA Crystal structure of glycniamide ribonucleotide transformylase in complex with mg-atp-gamma-s (see paper)
58% identity, 99% coverage: 2:396/400 of query aligns to 1:383/386 of 1kjjA
- active site: E114 (= E116), K154 (= K157), S159 (= S162), G161 (= G164), E261 (= E274), E273 (= E286), D280 (= D293), T281 (= T294), R357 (= R370)
- binding phosphothiophosphoric acid-adenylate ester: R113 (= R115), I152 (= I155), K154 (= K157), S159 (= S162), S160 (= S163), G161 (= G164), Q164 (= Q167), E189 (= E197), V192 (≠ I200), E197 (= E205), Q219 (= Q232), E261 (= E274), F263 (= F276), E273 (= E286)
- binding magnesium ion: E261 (= E274), E273 (= E286)
1kj8A Crystal structure of purt-encoded glycinamide ribonucleotide transformylase in complex with mg-atp and gar (see paper)
58% identity, 99% coverage: 2:396/400 of query aligns to 1:383/386 of 1kj8A
- active site: E114 (= E116), K154 (= K157), S159 (= S162), G161 (= G164), E261 (= E274), E273 (= E286), D280 (= D293), T281 (= T294), R357 (= R370)
- binding adenosine-5'-triphosphate: R113 (= R115), I152 (= I155), K154 (= K157), S159 (= S162), S160 (= S163), G161 (= G164), Q164 (= Q167), E189 (= E197), V192 (≠ I200), F194 (= F202), E197 (= E205), Q219 (= Q232), G222 (= G235), E261 (= E274), F263 (= F276), E273 (= E286)
- binding glycinamide ribonucleotide: G20 (= G21), E21 (= E22), L22 (= L23), E81 (= E82), I82 (= I83), S160 (= S163), D280 (= D293), K349 (= K362), R356 (= R369)
- binding magnesium ion: E261 (= E274), E273 (= E286)
O58056 Formate-dependent phosphoribosylglycinamide formyltransferase; 5'-phosphoribosylglycinamide transformylase 2; Formate-dependent GAR transformylase; GAR transformylase 2; GART 2; Non-folate glycinamide ribonucleotide transformylase; Phosphoribosylglycinamide formyltransferase 2; EC 6.3.1.21 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
48% identity, 99% coverage: 4:398/400 of query aligns to 8:411/430 of O58056
2dwcB Crystal structure of probable phosphoribosylglycinamide formyl transferase from pyrococcus horikoshii ot3 complexed with adp
46% identity, 99% coverage: 4:398/400 of query aligns to 10:400/409 of 2dwcB
- active site: E265 (= E274), E277 (= E286), D284 (= D293), T285 (= T294), R372 (= R370)
- binding adenosine-5'-diphosphate: R120 (= R115), H159 (≠ I155), K161 (= K157), H190 (≠ F199), I191 (= I200), F193 (= F202), E196 (= E205), F267 (= F276), E277 (= E286)
5jqwA The crystal structure of phosphoribosylaminoimidazole carboxylase atpase subunit of francisella tularensis subsp. Tularensis schu s4 in complex with adp
30% identity, 77% coverage: 14:322/400 of query aligns to 2:296/365 of 5jqwA
- active site: Y144 (≠ S162), G146 (= G164), E247 (= E274), E259 (= E286), N266 (≠ D293), S267 (≠ T294)
- binding adenosine-5'-diphosphate: R98 (= R115), K138 (= K157), G143 (≠ S161), Y144 (≠ S162), D145 (≠ S163), G146 (= G164), V178 (≠ I200), E183 (= E205), H206 (= H230), F249 (= F276), E259 (= E286)
Sites not aligning to the query:
4ma0A The crystal structure of phosphoribosylaminoimidazole carboxylase atpase subunit of francisella tularensis subsp. Tularensis schu s4 in complex with partially hydrolysed atp
30% identity, 77% coverage: 14:322/400 of query aligns to 2:296/366 of 4ma0A
- active site: Y144 (≠ S162), G146 (= G164), E247 (= E274), E259 (= E286), N266 (≠ D293), S267 (≠ T294)
- binding adenosine monophosphate: I136 (= I155), K138 (= K157), E175 (= E197), A176 (≠ G198), F177 (= F199), V178 (≠ I200), E183 (= E205), H206 (= H230), F249 (= F276), E259 (= E286)
Sites not aligning to the query:
4mamA The crystal structure of phosphoribosylaminoimidazole carboxylase atpase subunit of francisella tularensis subsp. Tularensis schu s4 in complex with an adp analog, amp-cp
30% identity, 77% coverage: 14:322/400 of query aligns to 2:296/373 of 4mamA
- active site: Y144 (≠ S162), G146 (= G164), E247 (= E274), E259 (= E286), N266 (≠ D293), S267 (≠ T294)
- binding phosphomethylphosphonic acid adenosyl ester: R98 (= R115), I136 (= I155), K138 (= K157), Y144 (≠ S162), G146 (= G164), Q149 (= Q167), E175 (= E197), F177 (= F199), V178 (≠ I200), F180 (= F202), E183 (= E205), H206 (= H230), F249 (= F276), E259 (= E286)
Sites not aligning to the query:
3r5hA Crystal structure of adp-air complex of purk: n5-carboxyaminoimidazole ribonucleotide synthetase (see paper)
27% identity, 92% coverage: 22:389/400 of query aligns to 18:367/383 of 3r5hA
- binding adenosine-5'-diphosphate: R107 (≠ E116), K147 (= K157), Q158 (= Q167), W184 (≠ F199), V185 (≠ I200), F187 (= F202), E190 (= E205), N216 (≠ G235), F257 (= F276), N267 (≠ S285), E268 (= E286)
- binding 5-aminoimidazole ribonucleotide: Q18 (≠ E22), L19 (= L23), E76 (= E82), Y153 (vs. gap), R272 (= R290), K340 (= K362), R347 (= R369)
Sites not aligning to the query:
4dlkA Crystal structure of atp-ca++ complex of purk: n5- carboxyaminoimidazole ribonucleotide synthetase (see paper)
27% identity, 92% coverage: 22:389/400 of query aligns to 18:367/380 of 4dlkA
- active site: Y153 (vs. gap), G155 (= G164), E255 (= E274), E268 (= E286), N275 (≠ D293), S276 (≠ T294), K348 (≠ R370)
- binding adenosine-5'-triphosphate: E76 (= E82), F77 (≠ I83), R107 (≠ E116), K147 (= K157), Y153 (vs. gap), D154 (≠ S163), G155 (= G164), Q158 (= Q167), W184 (≠ F199), V185 (≠ I200), F187 (= F202), E190 (= E205), E255 (= E274), F257 (= F276), N267 (≠ S285), E268 (= E286), R272 (= R290), H274 (= H292), N275 (≠ D293), K340 (= K362), R347 (= R369), K348 (≠ R370)
- binding calcium ion: E255 (= E274), E268 (= E286)
- binding phosphate ion: Q47 (= Q51), A49 (= A53)
3v4sB Crystal structure of adp-atp complex of purk: n5-carboxyaminoimidazole ribonucleotide synthetase (see paper)
27% identity, 92% coverage: 22:389/400 of query aligns to 19:368/381 of 3v4sB
- binding adenosine-5'-triphosphate: R108 (≠ E116), K148 (= K157), Y154 (vs. gap), D155 (≠ S163), G156 (= G164), Q159 (= Q167), E183 (= E197), W185 (≠ F199), V186 (≠ I200), F188 (= F202), E191 (= E205), H214 (≠ Q232), N217 (≠ G235), E256 (= E274), F258 (= F276), E269 (= E286)
- binding carbonate ion: R273 (= R290), H275 (= H292), N276 (≠ D293)
- binding magnesium ion: T105 (≠ M113), E111 (≠ R119), E256 (= E274), E269 (= E286), L270 (≠ V287)
3v4sA Crystal structure of adp-atp complex of purk: n5-carboxyaminoimidazole ribonucleotide synthetase (see paper)
27% identity, 92% coverage: 22:389/400 of query aligns to 17:366/380 of 3v4sA
- binding adenosine-5'-diphosphate: R106 (≠ E116), K146 (= K157), Y152 (vs. gap), G154 (= G164), Q157 (= Q167), W183 (≠ F199), V184 (≠ I200), E189 (= E205), N215 (≠ G235), F256 (= F276), N266 (≠ S285), E267 (= E286)
- binding carbonate ion: R271 (= R290), H273 (= H292), N274 (≠ D293)
3q2oB Crystal structure of purk: n5-carboxyaminoimidazole ribonucleotide synthetase (see paper)
27% identity, 92% coverage: 22:389/400 of query aligns to 18:367/377 of 3q2oB
4ma5A The crystal structure of phosphoribosylaminoimidazole carboxylase atpase subunit of francisella tularensis subsp. Tularensis schu s4 in complex with an atp analog, amp-pnp.
29% identity, 77% coverage: 14:322/400 of query aligns to 2:294/363 of 4ma5A
- active site: Y144 (≠ S162), G146 (= G164), E247 (= E274), E257 (= E286), N264 (≠ D293), S265 (≠ T294)
- binding phosphoaminophosphonic acid-adenylate ester: I136 (= I155), K138 (= K157), D145 (≠ S163), G146 (= G164), F177 (= F199), V178 (≠ I200), E183 (= E205), H206 (= H230), E247 (= E274), F249 (= F276), N256 (≠ S285), E257 (= E286), H263 (= H292)
Sites not aligning to the query:
3ax6A Crystal structure of n5-carboxyaminoimidazole ribonucleotide synthetase from thermotoga maritima
25% identity, 91% coverage: 32:395/400 of query aligns to 21:354/360 of 3ax6A
- active site: E231 (= E274), E244 (= E286), N251 (≠ D293), S252 (≠ T294), K330 (≠ R370)
- binding adenosine-5'-diphosphate: K101 (≠ R115), V136 (≠ I155), K138 (= K157), E164 (= E197), F166 (= F199), V167 (≠ I200), E172 (= E205), F233 (= F276), N243 (≠ S285)
3k5iA Crystal structure of n5-carboxyaminoimidazole synthase from aspergillus clavatus in complex with adp and 5-aminoimadazole ribonucleotide (see paper)
24% identity, 85% coverage: 32:372/400 of query aligns to 24:355/381 of 3k5iA
- active site: E254 (= E274), E267 (= E286), N274 (≠ D293), S275 (≠ T294), K353 (≠ R370)
- binding adenosine-5'-diphosphate: K104 (≠ E116), K146 (= K157), Y152 (≠ S162), D153 (≠ S163), G154 (= G164), W183 (≠ F199), A184 (≠ I200), F186 (= F202), E189 (= E205), Q211 (= Q232), S214 (≠ G235), E267 (= E286)
- binding 5-aminoimidazole ribonucleotide: E73 (= E82), I74 (= I83), Y152 (≠ S162), D153 (≠ S163), R155 (≠ K165), R271 (= R290), K345 (= K362), R352 (= R369)
- binding magnesium ion: E254 (= E274), E267 (= E286)
Sites not aligning to the query:
Query Sequence
>WP_068167469.1 NCBI__GCF_001592305.1:WP_068167469.1
MTTLGTPLSPSATKVMLLGSGELGKEVLIALQRLGVETIAVDRYDNAPGQQVAHHARTIT
MSDPAQLQALIEAERPHLVVPEIEAIATPMLEQLEAEGVVRVIPTARAARLTMDREGIRR
LAAETLGLPTSPYQFCDSLDELQAAIDGGIGYPCIVKPVMSSSGKGQSKIDGPADVQKAW
DYAMAGGRVGPGRVIVEGFIAFDYEITQLTVRALDAQGQVQTHFCDPIGHVQVSGDYVES
WQPHPMTPAALAESRRIAKTVTDNLGGQGLFGVELFVKGDQVWFSEVSPRPHDTGMVTMI
TQWQNEFELHARAILGLPVDTTLKSPGASAVIYGGVEARGIAFDGVDDALRVPHSEIRLF
GKPESFVKRRMGVALVFDADVEVARTQAKLAASKVKPRVA
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory