Comparing WP_068169521.1 NCBI__GCF_001592305.1:WP_068169521.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
48% identity, 95% coverage: 23:514/520 of query aligns to 4:494/501 of P04983
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 42% coverage: 23:242/520 of query aligns to 4:233/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 42% coverage: 23:242/520 of query aligns to 4:233/253 of 1g9xB
3d31A Modbc from methanosarcina acetivorans (see paper)
29% identity, 45% coverage: 23:257/520 of query aligns to 1:229/348 of 3d31A
Sites not aligning to the query:
8k1pB Mycobacterial efflux pump, adp+vanadate bound state
35% identity, 42% coverage: 22:240/520 of query aligns to 2:210/213 of 8k1pB
8k1oB Mycobacterial efflux pump, amppnp bound state
35% identity, 42% coverage: 22:240/520 of query aligns to 4:212/215 of 8k1oB
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
29% identity, 42% coverage: 23:239/520 of query aligns to 1:216/240 of 4ymuJ
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
33% identity, 42% coverage: 23:238/520 of query aligns to 4:222/648 of P75831
3c4jA Abc protein artp in complex with atp-gamma-s
28% identity, 40% coverage: 29:238/520 of query aligns to 9:216/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
28% identity, 40% coverage: 29:238/520 of query aligns to 9:216/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
28% identity, 40% coverage: 29:238/520 of query aligns to 9:216/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
28% identity, 40% coverage: 29:238/520 of query aligns to 9:216/242 of 2oljA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
28% identity, 42% coverage: 23:242/520 of query aligns to 2:219/241 of 4u00A
8wm7D Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with signalling protein pii (see paper)
33% identity, 41% coverage: 23:235/520 of query aligns to 4:214/257 of 8wm7D
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 43% coverage: 23:245/520 of query aligns to 1:227/343 of P30750
Sites not aligning to the query:
8w9mD Cryo-em structure of the cyanobacterial nitrate transporter nrtbcd in complex with atp (see paper)
33% identity, 41% coverage: 23:235/520 of query aligns to 2:212/256 of 8w9mD
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
30% identity, 43% coverage: 23:245/520 of query aligns to 2:228/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
30% identity, 43% coverage: 23:245/520 of query aligns to 2:228/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
30% identity, 43% coverage: 23:245/520 of query aligns to 2:228/344 of 3tuiC
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
29% identity, 45% coverage: 26:257/520 of query aligns to 6:242/353 of 1oxvD
>WP_068169521.1 NCBI__GCF_001592305.1:WP_068169521.1
MPPSAPDPVHAEPPSTAATAAVLLRLEGISKRFPGVLALDGVSLEVRRGEVHAVCGENGA
GKSTLMKVISGQYPPDAGTLHYRGEVCQFRSPADSEAAGIAIIHQELNLVPHLSVAENIF
LAREPRKGWLIDRAALRRNAQHCLDRLGLDIAPDVLVKTLSVAQQQMVEIAKALSLNAQV
LIMDEPTSSLTESETEKLFAIIHELKRAGVGIVYISHRLDELAQIVDRVTVLRDGRYVST
DRFADTTVEQIVAKMVGRSLDDVFPRRTSVPTPEVLLRVQGLTRQGAFHNVNFELRRGEI
LGFAGLMGAGRTEVARAIFGADPIDAGQVMLGEQRLAIHSPRDAVRHGLAYLSEDRKHDG
LALKMTVAQNITLANMEAVSNRVGLIRFDKEQVAAARYIKALDIRTPSSSQIVRLLSGGN
QQKLVISKWLFRESRVLFFDEPTRGIDVGAKYAIYQLLDELAGQGIGVVMISSELPEIMG
MTDRVAVFHEGRLVTVLNTRDTSQEEVMHFASGRSIPSPV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory