Comparing WP_068172852.1 NCBI__GCF_001592305.1:WP_068172852.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 40% coverage: 351:586/589 of query aligns to 14:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 40% coverage: 351:586/589 of query aligns to 14:253/253 of 1g9xB
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
33% identity, 42% coverage: 339:586/589 of query aligns to 4:238/240 of 1ji0A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
30% identity, 39% coverage: 357:588/589 of query aligns to 18:237/240 of 6mjpA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
32% identity, 40% coverage: 351:588/589 of query aligns to 12:237/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
32% identity, 40% coverage: 351:588/589 of query aligns to 12:237/238 of 6s8gA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
32% identity, 40% coverage: 351:586/589 of query aligns to 12:235/235 of 6mhzA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
29% identity, 38% coverage: 350:574/589 of query aligns to 10:223/240 of 4ymuJ
6mbnA Lptb e163q in complex with atp (see paper)
31% identity, 40% coverage: 351:588/589 of query aligns to 13:238/241 of 6mbnA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 38% coverage: 356:580/589 of query aligns to 20:234/343 of P30750
Sites not aligning to the query:
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
31% identity, 40% coverage: 351:585/589 of query aligns to 12:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
31% identity, 40% coverage: 351:585/589 of query aligns to 12:234/234 of 4p31A
3c4jA Abc protein artp in complex with atp-gamma-s
28% identity, 41% coverage: 341:579/589 of query aligns to 3:230/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
28% identity, 41% coverage: 341:579/589 of query aligns to 3:230/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
28% identity, 41% coverage: 341:579/589 of query aligns to 3:230/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
28% identity, 41% coverage: 341:579/589 of query aligns to 3:230/242 of 2oljA
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
31% identity, 38% coverage: 356:580/589 of query aligns to 21:235/344 of 6cvlD
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
31% identity, 38% coverage: 356:580/589 of query aligns to 21:235/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
31% identity, 38% coverage: 356:580/589 of query aligns to 21:235/344 of 3tuiC
Sites not aligning to the query:
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
27% identity, 41% coverage: 339:577/589 of query aligns to 2:231/501 of P04983
>WP_068172852.1 NCBI__GCF_001592305.1:WP_068172852.1
MKNLQNMGLLVLAAAIPLIAVLPLPDFWITQLNYIGMYSMTVMGLVLLTGVGGLTSFGQA
AFVGIGAYTTAWLTLNLGVSPWLTLFIGMGLTAASALLVGLITLRMSGHYLPLATIAWGL
SLYYLMGNLDALGKYDGLLGLQSLSIAGFDIGQGRGFFVLTWAILLAFAAALLHLLDSRA
GRAIRSLKGGSQMAEAMGISTFRYKVTIFVLAALFASVAGWLLAHFQRTVNPSAFGLKMG
IEYLFMAVVGGVGHVWGAIVGAGLIRVLEDQLQVLLPRLIGTSGSYEVIVFGIALVVVLK
YLPDGLWSMVGKRVPRQPRVVDWAQAEALPERAKPTAGELVLDVKKARMQFGGLVAVNDI
SFQIQAGQIVGLIGPNGAGKSTTFNLITGVLRATRGEVVFQGGNISGKPSREIARLGMAR
TFQHVKMIPDMTVLENVALGAHTRGRKGVLTAMLRANRTEEKQLFREAQRQLERIGMGDY
LHEQAGNLAMGPQRLMEIARALCADPTLLLLDEPAAGLRHQEKQALAGVLRQLKSEGMSI
LLVEHDMDLVMQICDHLVVMEFGTLLTQGPPAQIQQDPKVRAAYLGTEH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory