Comparing WP_068173860.1 NCBI__GCF_001592305.1:WP_068173860.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6hyhA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with beta-d-fucofuranose (see paper)
57% identity, 91% coverage: 31:321/321 of query aligns to 2:291/304 of 6hyhA
Sites not aligning to the query:
6hbmA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with alpha-l-arabinofuranose (see paper)
57% identity, 91% coverage: 31:321/321 of query aligns to 2:291/304 of 6hbmA
Sites not aligning to the query:
6hbdA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with beta-d-galactofuranose (see paper)
57% identity, 91% coverage: 31:321/321 of query aligns to 3:292/305 of 6hbdA
Sites not aligning to the query:
5ocpA The periplasmic binding protein component of the arabinose abc transporter from shewanella sp. Ana-3 bound to alpha and beta-l- arabinofuranose
55% identity, 90% coverage: 32:320/321 of query aligns to 2:289/302 of 5ocpA
2vk2A Crystal structure of a galactofuranose binding protein (see paper)
55% identity, 91% coverage: 30:320/321 of query aligns to 1:292/296 of 2vk2A
P39325 Galactofuranose-binding protein YtfQ from Escherichia coli (strain K12) (see 2 papers)
55% identity, 91% coverage: 30:320/321 of query aligns to 23:314/318 of P39325
Sites not aligning to the query:
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
36% identity, 70% coverage: 56:279/321 of query aligns to 26:239/274 of 2ioyA
Sites not aligning to the query:
7e7mC Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
29% identity, 85% coverage: 29:302/321 of query aligns to 7:269/284 of 7e7mC
2x7xA Fructose binding periplasmic domain of hybrid two component system bt1754 (see paper)
29% identity, 85% coverage: 33:306/321 of query aligns to 4:270/301 of 2x7xA
A0QYB5 D-threitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
29% identity, 93% coverage: 7:304/321 of query aligns to 5:289/349 of A0QYB5
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
31% identity, 77% coverage: 28:273/321 of query aligns to 6:241/287 of 4yo7A
Sites not aligning to the query:
4rsmA Crystal structure of carbohydrate transporter msmeg_3599 from mycobacterium smegmatis str. Mc2 155, target efi-510970, in complex with d-threitol (see paper)
29% identity, 83% coverage: 42:309/321 of query aligns to 13:267/315 of 4rsmA
Sites not aligning to the query:
2fn8A Thermotoga maritima ribose binding protein ribose bound form (see paper)
31% identity, 75% coverage: 44:285/321 of query aligns to 15:250/292 of 2fn8A
Sites not aligning to the query:
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
29% identity, 76% coverage: 56:300/321 of query aligns to 28:261/270 of 4zjpA
Sites not aligning to the query:
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
30% identity, 71% coverage: 51:277/321 of query aligns to 18:237/271 of 1dbpA
Sites not aligning to the query:
A0QYB3 Xylitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
27% identity, 83% coverage: 42:306/321 of query aligns to 45:291/349 of A0QYB3
Sites not aligning to the query:
5hkoA Crystal structure of abc transporter solute binding protein msmeg_3598 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with l-sorbitol
27% identity, 83% coverage: 42:306/321 of query aligns to 12:258/314 of 5hkoA
Sites not aligning to the query:
4rs3A Crystal structure of carbohydrate transporter a0qyb3 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with xylitol (see paper)
27% identity, 83% coverage: 42:306/321 of query aligns to 12:258/315 of 4rs3A
Sites not aligning to the query:
8fxuA Thermoanaerobacter thermosaccharolyticum periplasmic glucose-binding protein glucose complex: badan conjugate attached at f17c (see paper)
29% identity, 65% coverage: 62:269/321 of query aligns to 34:251/310 of 8fxuA
Sites not aligning to the query:
4irxA Crystal structure of caulobacter myo-inositol binding protein bound to myo-inositol (see paper)
27% identity, 87% coverage: 19:297/321 of query aligns to 1:273/296 of 4irxA
>WP_068173860.1 NCBI__GCF_001592305.1:WP_068173860.1
MKLNRRTLAAAIACAPLAGLLPAAAWAQKPIVLGFSQVGAESEWRTANTESIKSAAKEAG
IELKFSDAQQKQENQIKAIRSFIAQKVDVIAFSPVVESGWETVLREAKAAKIPVVLTDRA
VNVKDTSLYVSFMGSDFVEEGRKAGRWLVEKMKDQKGEVNIVELQGTVGSAPAIDRKKGF
EEIIKADPKFKIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQAIEE
AGMKPAKDITIISIDAVKGAFEAMIAGKLNVSVECSPLLGPQLMAAVKDIKAGKAVQKRI
VTEEGIFPMEVAAQEFPKRKY
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory