SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_068331369.1 NCBI__GCF_001650345.1:WP_068331369.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

Q02DS7 Tryptophan-specific transport protein; Tryptophan permease from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
43% identity, 99% coverage: 3:402/403 of query aligns to 12:417/417 of Q02DS7

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Q02DS7
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Sites not aligning to the query:

Query Sequence

>WP_068331369.1 NCBI__GCF_001650345.1:WP_068331369.1
MSKPSTLGGACIIASVCVGAGMLGLPSAGAGAWTLWSVIAISFTMIMMTLSGWLLLEALK
HYELKASFNTVAKDLLSKKANFVNNLSLYFVGGILLYAYISSSGMIFSEMLGMSREFASI
LFVALCSAFVLHSTRAVDRISIVLILFMILSFVLGISGLASNISVPVLFAQGEGESSYST
YALALLPVALTSFGYHHSVSTMRDYYQDEHRAKKAILGGTMIALTFYLGWVVCIFGNLPR
AEFGPVVTAGGGVDALLSALTSAIDSNSIKQALHVFSIAAIVSSFIGVGLGLFDYLADLF
GFADTKQGRLKTWGVTFLPPLVFSLVAPFGFVAAIGLAGAAATIWTCIVPATLAKTLRQR
TPEQAGFVVPGGNVTIYMVMAFGVLTAIFHVMAMANLLPVFKG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory