Comparing WP_068459458.1 NCBI__GCF_001541235.1:WP_068459458.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8uw6B Acetylornithine deacetylase from escherichia coli, di-zinc form. (see paper)
33% identity, 91% coverage: 24:380/391 of query aligns to 28:374/381 of 8uw6B
Sites not aligning to the query:
Q8P8J5 N-acetyl-L-citrulline deacetylase; ACDase; Acetylcitrulline deacetylase; EC 3.5.1.- from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) (see paper)
30% identity, 96% coverage: 7:380/391 of query aligns to 7:361/366 of Q8P8J5
2f7vA Structure of acetylcitrulline deacetylase complexed with one co (see paper)
30% identity, 96% coverage: 7:380/391 of query aligns to 8:356/360 of 2f7vA
4pqaA Crystal structure of succinyl-diaminopimelate desuccinylase from neisseria meningitidis mc58 in complex with the inhibitor captopril (see paper)
31% identity, 54% coverage: 69:281/391 of query aligns to 62:278/375 of 4pqaA
Sites not aligning to the query:
4o23A Crystal structure of mono-zinc form of succinyl diaminopimelate desuccinylase from neisseria meningitidis mc58 (see paper)
31% identity, 54% coverage: 69:281/391 of query aligns to 62:278/376 of 4o23A
Q03154 Aminoacylase-1; ACY-1; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14 from Homo sapiens (Human) (see 6 papers)
28% identity, 71% coverage: 2:280/391 of query aligns to 4:295/408 of Q03154
Sites not aligning to the query:
7lgpB Dape enzyme from shigella flexneri
34% identity, 49% coverage: 69:261/391 of query aligns to 63:259/377 of 7lgpB
P37111 Aminoacylase-1; ACY-1; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14 from Sus scrofa (Pig) (see paper)
29% identity, 65% coverage: 28:280/391 of query aligns to 33:294/407 of P37111
Sites not aligning to the query:
5vo3A Crystal structure of dape in complex with the products (succinic acid and diaminopimelic acid) (see paper)
30% identity, 53% coverage: 69:275/391 of query aligns to 66:276/380 of 5vo3A
Sites not aligning to the query:
P44514 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 3 papers)
30% identity, 53% coverage: 69:275/391 of query aligns to 62:272/377 of P44514
Sites not aligning to the query:
7uoiA Crystallographic structure of dape from enterococcus faecium (see paper)
26% identity, 86% coverage: 32:369/391 of query aligns to 33:366/383 of 7uoiA
7t1qA Crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in complex with succinic acid
30% identity, 59% coverage: 56:284/391 of query aligns to 50:281/377 of 7t1qA
Sites not aligning to the query:
3dljA Crystal structure of human carnosine dipeptidase 1
24% identity, 56% coverage: 57:275/391 of query aligns to 83:357/471 of 3dljA
Sites not aligning to the query:
Q96KP4 Cytosolic non-specific dipeptidase; CNDP dipeptidase 2; Glutamate carboxypeptidase-like protein 1; Peptidase A; Threonyl dipeptidase; EC 3.4.13.18 from Homo sapiens (Human)
40% identity, 21% coverage: 69:149/391 of query aligns to 94:177/475 of Q96KP4
Sites not aligning to the query:
2zogA Crystal structure of mouse carnosinase cn2 complexed with zn and bestatin (see paper)
40% identity, 21% coverage: 69:149/391 of query aligns to 98:181/478 of 2zogA
Sites not aligning to the query:
2zofA Crystal structure of mouse carnosinase cn2 complexed with mn and bestatin (see paper)
40% identity, 21% coverage: 69:149/391 of query aligns to 98:181/478 of 2zofA
Sites not aligning to the query:
Q9D1A2 Cytosolic non-specific dipeptidase; CNDP dipeptidase 2; Glutamate carboxypeptidase-like protein 1; Threonyl dipeptidase; EC 3.4.13.18 from Mus musculus (Mouse) (see 2 papers)
40% identity, 21% coverage: 69:149/391 of query aligns to 94:177/475 of Q9D1A2
Sites not aligning to the query:
7ljhA Structure of poly(aspartic acid) hydrolase pahz2 with zn+2 bound (see paper)
24% identity, 88% coverage: 37:381/391 of query aligns to 52:391/400 of 7ljhA
4h2kA Crystal structure of the catalytic domain of succinyl-diaminopimelate desuccinylase from haemophilus influenzae (see paper)
37% identity, 26% coverage: 69:168/391 of query aligns to 64:167/258 of 4h2kA
Sites not aligning to the query:
P06621 Carboxypeptidase G2; CPDG2; Folate hydrolase G2; Glutamate carboxypeptidase; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; EC 3.4.17.11 from Pseudomonas sp. (strain RS-16) (see paper)
26% identity, 85% coverage: 7:338/391 of query aligns to 42:348/415 of P06621
Sites not aligning to the query:
>WP_068459458.1 NCBI__GCF_001541235.1:WP_068459458.1
MKGPKYSVIELLDRLVSFDTTSHKSNVALIRFVEDYLLQHGVVSQLVPNADGSKVSLYAT
IGPENVAGVALSGHTDVVPVVGQKWTSDPFTLTKRDGRLYGRGSTDMKGFLACMLAAVPD
FMNRKLQVPIHLAFSYDEEIGCLGVRPMIAEFGKRLTMPRMVFVGEPTLMTVVDCHKGPV
RWHVTIKGRAAHSSMAPLGVNTITVAGKLLGEIARIEADLKEAPQDARFDPPYATMQVTK
IEGGTATNIVPVECTMDFDIRALPGVDIPAIDRRIRAFANETCLPDMQRVAPEAAIDIAI
ANQVPPFAAGEHSEAVALALRLAEQNETHAVSYATEAGLFQTGGSPSVVVGPGDIAQAHT
ADEWIAIEQLEKCSAFLTRLGDWAEHGSAVR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory