Comparing WP_068463498.1 NCBI__GCF_001541235.1:WP_068463498.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P0ABH7 Citrate synthase; EC 2.3.3.16 from Escherichia coli (strain K12) (see 2 papers)
67% identity, 97% coverage: 10:322/322 of query aligns to 2:314/427 of P0ABH7
1nxgA The f383a variant of type ii citrate synthase complexed with nadh (see paper)
67% identity, 97% coverage: 10:322/322 of query aligns to 1:313/426 of 1nxgA
Sites not aligning to the query:
4jagA Structural determination of the a50t:s279g:s280k:v281k:k282e:h283n variant of citrate synthase from e. Coli complexed with oxaloacetate (see paper)
66% identity, 97% coverage: 10:322/322 of query aligns to 1:313/426 of 4jagA
Sites not aligning to the query:
4jaeA Structural determination of the a50t:s279g:s280k:v281k:k282e:h283n variant of citrate synthase from e. Coli complexed with s- carboxymethyl-coa (see paper)
66% identity, 97% coverage: 10:322/322 of query aligns to 1:313/426 of 4jaeA
Sites not aligning to the query:
1owbA Three dimensional structure analysis of the variant r109l nadh complex of type ii citrate synthase from e. Coli (see paper)
67% identity, 97% coverage: 10:322/322 of query aligns to 1:313/426 of 1owbA
Sites not aligning to the query:
2h12B Structure of acetobacter aceti citrate synthase complexed with oxaloacetate and carboxymethyldethia coenzyme a (cmx) (see paper)
66% identity, 96% coverage: 14:322/322 of query aligns to 3:311/426 of 2h12B
Sites not aligning to the query:
P9WPD5 Citrate synthase 1; EC 2.3.3.16 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
56% identity, 97% coverage: 12:322/322 of query aligns to 13:317/431 of P9WPD5
Sites not aligning to the query:
4tvmA Structure of citrate synthase from mycobacterium tuberculosis (see paper)
54% identity, 92% coverage: 12:306/322 of query aligns to 7:302/380 of 4tvmA
Sites not aligning to the query:
3msuB Crystal structure of citrate synthase from francisella tularensis
51% identity, 93% coverage: 24:322/322 of query aligns to 24:317/426 of 3msuB
Sites not aligning to the query:
3msuA Crystal structure of citrate synthase from francisella tularensis
50% identity, 93% coverage: 24:322/322 of query aligns to 24:312/415 of 3msuA
Sites not aligning to the query:
8bp7E Citrate-bound hexamer of synechococcus elongatus citrate synthase (see paper)
39% identity, 84% coverage: 51:322/322 of query aligns to 5:268/379 of 8bp7E
1aj8A Citrate synthase from pyrococcus furiosus (see paper)
39% identity, 81% coverage: 63:322/322 of query aligns to 13:265/371 of 1aj8A
Sites not aligning to the query:
1iomA Crystal structure of citrate synthase from thermus thermophilus hb8 (see paper)
38% identity, 84% coverage: 54:322/322 of query aligns to 4:264/374 of 1iomA
Sites not aligning to the query:
1ixeA Crystal structure of citrate synthase from thermus thermophilus hb8 (see paper)
38% identity, 84% coverage: 54:322/322 of query aligns to 4:264/371 of 1ixeA
Sites not aligning to the query:
6abyA Crystal structure of citrate synthase (msed_1522) from metallosphaera sedula in complex with oxaloacetate (see paper)
36% identity, 84% coverage: 54:322/322 of query aligns to 6:261/372 of 6abyA
Sites not aligning to the query:
6abxA Crystal structure of citrate synthase (msed_1522) from metallosphaera sedula in complex with citrate (see paper)
36% identity, 84% coverage: 54:322/322 of query aligns to 6:261/370 of 6abxA
Sites not aligning to the query:
6abwA Crystal structure of citrate synthase (msed_0281) from metallosphaera sedula in complex with acetyl-coa (see paper)
34% identity, 81% coverage: 62:322/322 of query aligns to 7:258/369 of 6abwA
Sites not aligning to the query:
P39120 Citrate synthase 2; Citrate synthase II; EC 2.3.3.16 from Bacillus subtilis (strain 168) (see paper)
34% identity, 84% coverage: 54:322/322 of query aligns to 6:265/372 of P39120
Sites not aligning to the query:
1a59A Cold-active citrate synthase (see paper)
36% identity, 82% coverage: 58:321/322 of query aligns to 12:275/377 of 1a59A
Sites not aligning to the query:
O34002 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium DS2-3R (see 2 papers)
36% identity, 82% coverage: 58:321/322 of query aligns to 14:277/379 of O34002
Sites not aligning to the query:
>WP_068463498.1 NCBI__GCF_001541235.1:WP_068463498.1
MNVHERAPNCEPAAELTLERKLSRMPVRSGTLGPEVIEVGKLYRDTGCFTYDPGFTSTAN
CTSRITYIDGDEGVLLYRGYPIDQLAERSTFLEVCYLLLNGELPVTGQLDEFRGTINRHN
MLHEQVTRFFTGFRRDAHPMAVMVGTVGALSAFYHDSTDINDPAQRAMASNRMIAKMPTI
AAMAYKYSIGHPFIYPRNDLDFAENFMQMCFAIPCEPYKVDPILTRALDRIFILHADHEQ
NASTSTVRLAGSSGANPFACIASGIACLWGPAHGGANEAALNMLMEIGSVDRIPEYIKKA
KDKSSGFRLMGFGHRVYKNYDP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory