SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_068865711.1 NCBI__GCF_001677335.1:WP_068865711.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P0AAC6 Modulator of FtsH protease YccA from Escherichia coli (strain K12) (see 2 papers)
33% identity, 49% coverage: 122:242/245 of query aligns to 103:214/219 of P0AAC6

query
sites
P0AAC6
G
 
G
E
 
D
S
 
V
I
 
I
A
 
A
T
 
M
T
 
A
F
 
L
F
 
G
A
 
G
T
 
T
A
 
A
G
 
L
A
 
V
F
 
F
A
 
F
G
 
C
L
 
C
S
 
S
L
 
A
W
 
Y
G
 
V
Y
 
L
T
 
T
T
 
T
K
 
R
K
 
K
D
 
D
L
 
M
S
 
S
G
 
F
F
 
L
G
 
G
T
 
G
F
 
M
L
 
L
V
 
M
M
 
A
G
 
G
V
 
I
F
 
V
G
 
V
L
 
V
I
 
L
I
 
I
A
 
G
M
 
M
I
 
V
L
 
A
N
 
N
F
 
I
F
 
F
L
 
L
Q
 
Q
S
 
L
G
 
P
T
 
A
L
 
L
A
 
H
L
 
L
V
 
A
I
 
I
S
 
S
I
 
A
L
 
V
G
 
F
V
 
I
L
 
L
I
 
I
F
 
S
A
 
S
G
 
G
L
 
A
T
 
I
A
 
L
Y
 
F
D
 
E
T
 
T
Q
 
S
R
 
N
L
 
I
K
 
I
N
 
H
-
 
G
-
 
G
Q
 
E
Y
 
T
D
 
N
Y
 
Y
L
 
I
R
 
R
G
 
A
T
 
T
Q
 
-
F
 
-
M
 
-
G
 
-
K
 
-
A
 
-
V
 
-
I
 
-
M
 
-
G
 
-
A
 
-
T
 
V
T
 
S
L
 
L
Y
 
Y
L
 
V
D
 
S
F
 
L
V
 
Y
N
 
N
M
 
I
F
 
F
M
 
V
F
 
S
L
 
L
L
 
L
Q
 
S
F
 
I
L
 
L
G
 
G

Sites not aligning to the query:

Query Sequence

>WP_068865711.1 NCBI__GCF_001677335.1:WP_068865711.1
MADWNDTSRDAQRLGSVPRAGGEVAGRYDEGLRKYMLSIYNYMASGVLLTGIVALVAAST
GVAYAFASGPLMWIVALAPLGFILAMNFGLHKMSQGTLQLLFWAFATVMGLSMSTIFLVF
TGESIATTFFATAGAFAGLSLWGYTTKKDLSGFGTFLVMGVFGLIIAMILNFFLQSGTLA
LVISILGVLIFAGLTAYDTQRLKNQYDYLRGTQFMGKAVIMGATTLYLDFVNMFMFLLQF
LGNRE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory