SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_069331924.1 NCBI__GCF_003046325.1:WP_069331924.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

3oo6A Crystal structures and biochemical characterization of the bacterial solute receptor acbh reveal an unprecedented exclusive substrate preference for b-d-galactopyranose (see paper)
26% identity, 53% coverage: 88:327/450 of query aligns to 43:261/390 of 3oo6A

query
sites
3oo6A
N
 
N
F
 
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F
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A

Sites not aligning to the query:

4c1tA Structure of the xylo-oligosaccharide specific solute binding protein from bifidobacterium animalis subsp. Lactis bl-04 in complex with arabinoxylotriose (see paper)
27% identity, 31% coverage: 101:241/450 of query aligns to 59:187/396 of 4c1tA

query
sites
4c1tA
S
 
S
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G
P
 
P
D
 
D
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M
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x
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G
 
A
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K
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K
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E
L
 
M
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A
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W
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K

Sites not aligning to the query:

Query Sequence

>WP_069331924.1 NCBI__GCF_003046325.1:WP_069331924.1
MKARGPAIAAALALVSGPLAGQELKFPPGADARFHWDSFEALKGQDLSGQRLTILGPWLG
PDKALFDSVIAYFEAATGAEVTYNGSDNFEQQIVIDAGAGSPPDIAVFPQPGLARDLASK
GQLAPLDPATADWLRENYAAGESWVSLGTFPGRDGTEALYGFFYKIDVKSLVWYVPENFA
DFGYEIPATMEELRALTERMVADGVTPWCVGLASGGATGWPATDWVEDMMLRINPPEVYD
RWTSNEIPFDDPQVVAAIEEFGWFARTPDFVAGGPNAVAATDFRDSPKGLFSAPPQCFMH
KQASFIPSFFPEGTVIGEDADFFYLPAYADRDLGQPVLGAGTVFGLTRDTPVARAFLEFL
KTPIAHEVWMAQTGFLTPFTGVNTDVYGDPTLRKMGEILLNATTFRFDGSDLMPGAVGAG
AFWTGMIDYMGGKGAERVGADIQRTWDTFK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory