SitesBLAST
Comparing WP_072791060.1 NCBI__GCF_900143065.1:WP_072791060.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P69451 Long-chain-fatty-acid--CoA ligase; Long-chain acyl-CoA synthetase; Acyl-CoA synthetase; EC 6.2.1.3 from Escherichia coli (strain K12) (see paper)
55% identity, 100% coverage: 1:563/563 of query aligns to 1:561/561 of P69451
- Y213 (= Y212) mutation to A: Loss of activity.
- T214 (= T213) mutation to A: 10% of wild-type activity.
- G216 (= G215) mutation to A: Decreases activity.
- T217 (= T216) mutation to A: Decreases activity.
- G219 (= G218) mutation to A: Decreases activity.
- K222 (= K221) mutation to A: Decreases activity.
- E361 (= E362) mutation to A: Loss of activity.
8wevA Crystal structure of feruoyl-coa synthetase complexed with amp from amycolatopsis thermoflava
34% identity, 90% coverage: 49:552/563 of query aligns to 30:484/486 of 8wevA
Sites not aligning to the query:
5bsvA Crystal structure of 4-coumarate:coa ligase complexed with feruloyl adenylate (see paper)
30% identity, 93% coverage: 31:552/563 of query aligns to 26:526/529 of 5bsvA
- active site: S182 (≠ T213), S202 (≠ N233), H230 (= H262), T329 (≠ S361), E330 (= E362), K434 (≠ L461), Q439 (≠ N466), K519 (= K545)
- binding 5'-O-[(R)-hydroxy{[(2E)-3-(5-methoxy-4-oxocyclohexa-1,5-dien-1-yl)prop-2-enoyl]oxy}phosphoryl]adenosine: H230 (= H262), Y232 (≠ F264), S236 (≠ A268), A302 (≠ G335), A303 (≠ M336), P304 (≠ A337), G325 (= G357), G327 (= G359), M328 (≠ L360), T329 (≠ S361), P333 (= P365), V334 (= V366), D413 (= D440), K430 (= K457), K434 (≠ L461), Q439 (≠ N466)
5bsuA Crystal structure of 4-coumarate:coa ligase complexed with caffeoyl adenylate (see paper)
30% identity, 93% coverage: 31:552/563 of query aligns to 26:526/529 of 5bsuA
- active site: S182 (≠ T213), S202 (≠ N233), H230 (= H262), T329 (≠ S361), E330 (= E362), K434 (≠ L461), Q439 (≠ N466), K519 (= K545)
- binding 5'-O-[(R)-{[(2E)-3-(3,4-dioxocyclohexa-1,5-dien-1-yl)prop-2-enoyl]oxy}(hydroxy)phosphoryl]adenosine: H230 (= H262), Y232 (≠ F264), S236 (≠ A268), M299 (≠ N332), A302 (≠ G335), A303 (≠ M336), P304 (≠ A337), G325 (= G357), G327 (= G359), M328 (≠ L360), T329 (≠ S361), P333 (= P365), D413 (= D440), K430 (= K457), K434 (≠ L461), Q439 (≠ N466)
5bstA Crystal structure of 4-coumarate:coa ligase complexed with coumaroyl adenylate (see paper)
30% identity, 93% coverage: 31:552/563 of query aligns to 26:526/529 of 5bstA
- active site: S182 (≠ T213), S202 (≠ N233), H230 (= H262), T329 (≠ S361), E330 (= E362), K434 (≠ L461), Q439 (≠ N466), K519 (= K545)
- binding 5'-O-[(R)-hydroxy{[(2E)-3-(4-oxocyclohexa-1,5-dien-1-yl)prop-2-enoyl]oxy}phosphoryl]adenosine: H230 (= H262), Y232 (≠ F264), S236 (≠ A268), A302 (≠ G335), A303 (≠ M336), P304 (≠ A337), G325 (= G357), Y326 (= Y358), G327 (= G359), M328 (≠ L360), T329 (≠ S361), P333 (= P365), V334 (= V366), D413 (= D440), K430 (= K457), K434 (≠ L461), Q439 (≠ N466)
5bsrA Crystal structure of 4-coumarate:coa ligase complexed with adenosine monophosphate and coenzyme a (see paper)
30% identity, 93% coverage: 31:552/563 of query aligns to 25:525/528 of 5bsrA
- active site: S181 (≠ T213), S201 (≠ N233), H229 (= H262), T328 (≠ S361), E329 (= E362), K433 (≠ L461), Q438 (≠ N466), K518 (= K545)
- binding adenosine monophosphate: A301 (≠ G335), G326 (= G359), T328 (≠ S361), D412 (= D440), K429 (= K457), K433 (≠ L461), Q438 (≠ N466)
- binding coenzyme a: L102 (= L106), P226 (= P259), H229 (= H262), Y231 (≠ F264), F253 (≠ R287), K435 (≠ S463), G436 (= G464), F437 (= F465), F498 (≠ G525)
O24146 4-coumarate--CoA ligase 2; 4CL 2; Nt4CL-19; Nt4CL-2; 4-coumaroyl-CoA synthase 2; Caffeate--CoA ligase; Cinnamate--CoA ligase; Ferulate--CoA ligase; EC 6.2.1.12; EC 6.2.1.-; EC 6.2.1.-; EC 6.2.1.34 from Nicotiana tabacum (Common tobacco) (see paper)
30% identity, 93% coverage: 31:552/563 of query aligns to 33:533/542 of O24146
- S189 (≠ T213) binding ATP
- S190 (≠ G214) binding ATP
- G191 (= G215) binding ATP
- T192 (= T216) binding ATP
- T193 (= T217) binding ATP; mutation to A: Reduced activity against 4-coumarate.
- K197 (= K221) binding ATP; mutation to A: Reduced activity against 4-coumarate.
- H237 (= H262) mutation to A: Strongly reduced activity against 4-coumarate.
- Y239 (≠ F264) binding (E)-4-coumaroyl-AMP; binding (E)-caffeoyl-AMP; binding (E)-feruloyl-AMP; mutation to A: Strongly reduced activity against 4-coumarate.; mutation to F: Reduced activity against 4-coumarate.
- S243 (≠ A268) binding (E)-4-coumaroyl-AMP; binding (E)-caffeoyl-AMP; binding (E)-feruloyl-AMP
- K260 (≠ P286) binding CoA
- A309 (≠ G335) binding (E)-4-coumaroyl-AMP; binding (E)-caffeoyl-AMP; binding (E)-feruloyl-AMP
- Q331 (≠ E356) binding ATP
- G332 (= G357) binding (E)-4-coumaroyl-AMP; binding (E)-caffeoyl-AMP; binding (E)-feruloyl-AMP; binding AMP; binding ATP
- T336 (≠ S361) binding (E)-4-coumaroyl-AMP; binding (E)-caffeoyl-AMP; binding (E)-feruloyl-AMP; binding AMP; binding ATP; mutation to A: Strongly reduced activity against 4-coumarate.
- V341 (= V366) mutation to G: Reduced activity against 4-coumarate.; mutation Missing: Reduced activity against 4-coumarate, but acquired ability to use sinapate as substrate.
- M344 (≠ T368) binding (E)-4-coumaroyl-AMP; binding (E)-caffeoyl-AMP; binding (E)-feruloyl-AMP; mutation to A: Reduced activity against 4-coumarate.
- D420 (= D440) binding (E)-4-coumaroyl-AMP; binding (E)-caffeoyl-AMP; binding (E)-feruloyl-AMP; binding AMP; binding ATP
- R435 (= R455) binding (E)-4-coumaroyl-AMP; binding (E)-caffeoyl-AMP; binding (E)-feruloyl-AMP; binding ATP; mutation to A: Strongly reduced activity against 4-coumarate.
- K437 (= K457) binding (E)-4-coumaroyl-AMP; binding (E)-caffeoyl-AMP; binding (E)-feruloyl-AMP; binding AMP
- K441 (≠ L461) binding (E)-4-coumaroyl-AMP; binding (E)-caffeoyl-AMP; binding (E)-feruloyl-AMP; binding AMP; mutation to A: Abolished activity against 4-coumarate.
- K443 (≠ S463) binding CoA; mutation to A: Normal activity against 4-coumarate.
- G444 (= G464) binding CoA
- Q446 (≠ N466) binding AMP
- K526 (= K545) binding ATP; mutation to A: Abolished activity against 4-coumarate.
5bsmA Crystal structure of 4-coumarate:coa ligase complexed with magnesium and adenosine triphosphate (see paper)
30% identity, 93% coverage: 31:552/563 of query aligns to 26:526/530 of 5bsmA
- active site: S182 (≠ T213), S202 (≠ N233), H230 (= H262), T329 (≠ S361), E330 (= E362), K434 (≠ L461), Q439 (≠ N466), K519 (= K545)
- binding adenosine-5'-triphosphate: S182 (≠ T213), S183 (≠ G214), G184 (= G215), T185 (= T216), T186 (= T217), K190 (= K221), H230 (= H262), A302 (≠ G335), A303 (≠ M336), P304 (≠ A337), Y326 (= Y358), G327 (= G359), M328 (≠ L360), T329 (≠ S361), D413 (= D440), I425 (= I452), R428 (= R455), K519 (= K545)
Q9S725 4-coumarate--CoA ligase 2; 4CL 2; 4-coumarate--CoA ligase isoform 2; At4CL2; 4-coumaroyl-CoA synthase 2; Caffeate--CoA ligase; EC 6.2.1.12; EC 6.2.1.- from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
29% identity, 89% coverage: 50:552/563 of query aligns to 65:547/556 of Q9S725
- K211 (= K221) mutation to S: Drastically reduces the activity.
- M293 (≠ P305) mutation M->A,P: Affects the substrate specificity.
- K320 (≠ N332) mutation K->L,A: Affects the substrate specificity.
- E401 (= E407) mutation to Q: Slighlty reduces the substrate specificity.
- C403 (≠ A409) mutation to A: Significantly reduces the substrate specificity.
- R449 (= R455) mutation to Q: Drastically reduces the activity.
- K457 (≠ S463) mutation to S: Drastically reduces the activity.
- K540 (= K545) mutation to N: Abolishes the activity.
3ni2A Crystal structures and enzymatic mechanisms of a populus tomentosa 4- coumarate:coa ligase (see paper)
29% identity, 90% coverage: 50:554/563 of query aligns to 47:528/528 of 3ni2A
- active site: S182 (≠ T213), S202 (≠ N233), H230 (= H262), T329 (≠ S361), E330 (= E362), K434 (≠ L461), Q439 (≠ N466), K519 (= K545)
- binding 5'-O-{(S)-hydroxy[3-(4-hydroxyphenyl)propoxy]phosphoryl}adenosine: Y232 (≠ F264), S236 (≠ A268), G302 (= G335), A303 (≠ M336), P304 (≠ A337), G325 (= G357), G327 (= G359), T329 (≠ S361), P333 (= P365), V334 (= V366), D413 (= D440), K430 (= K457), K434 (≠ L461), Q439 (≠ N466)
3a9vA Crystal structures and enzymatic mechanisms of a populus tomentosa 4- coumarate--coa ligase (see paper)
29% identity, 90% coverage: 50:554/563 of query aligns to 47:528/528 of 3a9vA
- active site: S182 (≠ T213), S202 (≠ N233), H230 (= H262), T329 (≠ S361), E330 (= E362), K434 (≠ L461), Q439 (≠ N466), K519 (= K545)
- binding adenosine monophosphate: H230 (= H262), G302 (= G335), A303 (≠ M336), P304 (≠ A337), Y326 (= Y358), G327 (= G359), M328 (≠ L360), T329 (≠ S361), D413 (= D440), K430 (= K457), K434 (≠ L461), Q439 (≠ N466)
5u95B Structure of the open conformation of 4-coumarate-coa ligase from nicotiana tabacum
30% identity, 93% coverage: 31:552/563 of query aligns to 25:522/527 of 5u95B
Q67W82 4-coumarate--CoA ligase 4; 4CL 4; Os4CL4; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 4; Protein RESISTANCE TO ALUMINUM 1; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa subsp. japonica (Rice) (see paper)
28% identity, 89% coverage: 50:552/563 of query aligns to 61:542/559 of Q67W82
- G395 (= G406) mutation to R: In ral1; reduced lignin content and increased accumulation of 4-coumarate and ferulate in roots; confers increased tolerance to aluminum.
4gxqA Crystal structure of atp bound rpmatb-bxbclm chimera b1 (see paper)
29% identity, 92% coverage: 34:553/563 of query aligns to 17:499/506 of 4gxqA
- active site: T163 (= T213), N183 (= N233), H207 (= H262), T303 (≠ S361), E304 (= E362), I403 (≠ L461), N408 (= N466), A491 (≠ K545)
- binding adenosine-5'-triphosphate: T163 (= T213), S164 (≠ G214), G165 (= G215), T166 (= T216), T167 (= T217), H207 (= H262), S277 (≠ G335), A278 (≠ M336), P279 (≠ A337), E298 (= E356), M302 (≠ L360), T303 (≠ S361), D382 (= D440), R397 (= R455)
- binding carbonate ion: H207 (= H262), S277 (≠ G335), R299 (≠ G357), G301 (= G359)
4wv3B Crystal structure of the anthranilate coa ligase auaeii in complex with anthranoyl-amp (see paper)
28% identity, 96% coverage: 18:555/563 of query aligns to 5:512/518 of 4wv3B
- active site: S175 (≠ T213), T320 (≠ S361), E321 (= E362), K418 (≠ L461), W423 (≠ N466), K502 (= K545)
- binding 5'-O-[(S)-[(2-aminobenzoyl)oxy](hydroxy)phosphoryl]adenosine: F220 (≠ H262), T221 (≠ I263), F222 (= F264), A293 (≠ G334), S294 (≠ G335), E295 (≠ M336), A296 (= A337), G316 (= G357), I317 (≠ Y358), G318 (= G359), C319 (≠ L360), T320 (≠ S361), D397 (= D440), H409 (≠ I452), R412 (= R455), K502 (= K545)
P9WQ37 Long-chain-fatty-acid--CoA ligase FadD13; Fatty acyl-CoA ligase; FACL; FACL13; Fatty acyl-CoA synthetase; ACS; FACS; Very-long-chain fatty-acyl-CoA synthetase; ACSVL; EC 6.2.1.3 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 4 papers)
30% identity, 91% coverage: 40:554/563 of query aligns to 19:496/503 of P9WQ37
- K172 (= K221) mutation to A: Slight reduction of the fatty acyl-CoA ligase activity. Slight increase of susceptibility to proteolysis.
- R195 (≠ D249) mutation to A: Alteration of the strength of the membrane binding; when associated with A-9; A-17; A-197 and A-244.
- R197 (≠ Q251) mutation to A: Alteration of the strength of the membrane binding; when associated with A-9; A-17; A-195 and A-244.
- V209 (≠ I263) mutation to D: Strong reduction of the fatty acyl-CoA ligase activity. No significant change in the total expression level, however the cytoplasmic expression is reduced. Slight increase of susceptibility to proteolysis.
- A211 (= A265) mutation to G: Slight increase of the fatty acyl-CoA ligase activity. Reduced rate of proteolytic degradation.
- T214 (≠ A268) mutation to W: Shows a marked decrease in the activity with lauric and palmitic acid (C12 and C16 fatty acid) with a simultaneous increase in the activity with caprylic acid (C8 fatty acid).
- R244 (≠ K300) mutation to A: Alteration of the strength of the membrane binding; when associated with A-17; A-195; A-195 and A-197.
- A302 (≠ G359) mutation to G: Slight increase of the fatty acyl-CoA ligase activity. Reduced rate of proteolytic degradation.; mutation to W: Does not show activity with small, medium or long acyl chains.
- W377 (≠ F435) mutation to A: Strong reduction of the fatty acyl-CoA ligase activity. Enhanced affinity towards palmitic acid binding. No significant change in the total expression level, however the cytoplasmic expression is low. Slight increase of susceptibility to proteolysis.
- D382 (= D440) mutation to A: Strong reduction of the fatty acyl-CoA ligase activity. No significant change in the total expression level, however the cytoplasmic expression is reduced.
- R397 (= R455) mutation to A: Reduction of binding affinity for fatty acids.
- S404 (≠ V462) mutation to A: Slight reduction of the fatty acyl-CoA ligase activity. Enhanced affinity towards palmitic acid binding.
- G406 (= G464) mutation to L: No effect on the formation of acyl-adenylate intermediate. However, it shows very poor catalytic efficiency to form acyl-CoA.
- K487 (= K545) mutation to A: Strong reduction of the fatty acyl-CoA ligase activity. Reduction of binding affinity for ATP.
Sites not aligning to the query:
- 9 R→A: Alteration of the strength of the membrane binding; when associated with A-9; A-195; A-197 and A-244.
- 17 R→A: Alteration of the strength of the membrane binding; when associated with A-9; A-17; A-197 and A-244.
4zjzA Crystal structure of a benzoate coenzyme a ligase with benzoyl-amp (see paper)
29% identity, 92% coverage: 38:553/563 of query aligns to 23:515/517 of 4zjzA
- active site: S176 (≠ T213), T196 (≠ Q236), T324 (≠ S361), E325 (= E362), K422 (≠ L461), Y427 (≠ N466), K507 (= K545)
- binding 5'-O-[(R)-(benzoyloxy)(hydroxy)phosphoryl]adenosine: A222 (≠ I263), Y223 (≠ F264), A297 (≠ G334), G298 (= G335), E299 (≠ M336), A300 (= A337), G320 (= G357), I321 (≠ Y358), G322 (= G359), S323 (≠ L360), T324 (≠ S361), H328 (≠ P365), I329 (≠ V366), D401 (= D440), R416 (= R455), K422 (≠ L461), Y427 (≠ N466)
4rm2A Crystal structure of a benzoate coenzyme a ligase with 2-fluoro benzoic acid (see paper)
29% identity, 92% coverage: 38:553/563 of query aligns to 23:515/516 of 4rm2A
- active site: S176 (≠ T213), T196 (≠ Q236), T324 (≠ S361), E325 (= E362), K422 (≠ L461), Y427 (≠ N466), K507 (= K545)
- binding 2-fluorobenzoic acid: A216 (≠ C256), A222 (≠ I263), Y223 (≠ F264), P246 (= P284), T247 (≠ N285), V251 (vs. gap), F267 (≠ L304), G269 (≠ A306), A270 (≠ V307), G273 (≠ L310), M277 (≠ L314), A297 (≠ G334), G298 (= G335), I321 (≠ Y358), G322 (= G359), S323 (≠ L360), H328 (≠ P365), K422 (≠ L461)
4rm3A Crystal structure of a benzoate coenzyme a ligase with 2-furoic acid (see paper)
29% identity, 92% coverage: 38:553/563 of query aligns to 24:516/518 of 4rm3A
- active site: S177 (≠ T213), T197 (≠ Q236), T325 (≠ S361), E326 (= E362), K423 (≠ L461), Y428 (≠ N466), K508 (= K545)
- binding 2-furoic acid: A223 (≠ I263), Y224 (≠ F264), A298 (≠ G334), G323 (= G359), H329 (≠ P365), I330 (≠ V366), K423 (≠ L461)
4rmnA Crystal structure of a benzoate coenzyme a ligase with 2-thiophene carboxylic acid (see paper)
29% identity, 92% coverage: 38:553/563 of query aligns to 23:515/518 of 4rmnA
- active site: S176 (≠ T213), T196 (≠ Q236), T324 (≠ S361), E325 (= E362), K422 (≠ L461), Y427 (≠ N466), K507 (= K545)
- binding thiophene-2-carboxylic acid: A217 (= A257), F221 (≠ H262), Y223 (≠ F264), G269 (≠ A306), A270 (≠ V307), A297 (≠ G334), G298 (= G335), G322 (= G359), S323 (≠ L360), H328 (≠ P365), I329 (≠ V366), K422 (≠ L461), G425 (= G464)
Query Sequence
>WP_072791060.1 NCBI__GCF_900143065.1:WP_072791060.1
MEKIWLQSYPPGMQTEVDTSQYRSLVQLLEESFHKYANRNAYVCMDKFLTYAEVDAYSKR
LGAWLQSRGLKPGARVAIMMPNVLQYPIAIAAILRAGYTVVNVNPLYTPRELEHQLNDSG
SEAIIILENFATTLEQVLGRTQVKHIVVASMGEMLGGLKGMLVNFVVRSVKKMVPAFSLP
NAVRFKDALSQGGGMKLTPVERQYNDPAFLQYTGGTTGVSKGATLTHQNIVANLLQSEAW
SQPALGGSDEQVTIVCALPLYHIFALTACAMWGTRVGALNILIPNPRDIGGFIKELAKYK
FNMLPAVNTLYNALLNHPDFVHLDFSALKICNGGGMAVQQAVNDRWLKATGVSIIEGYGL
SETSPVATCNRADSTAFTGTIGLPVPSTDIAILDDDGNEVALGTAGEIAIRGPQVMAGYW
NRPDETAKVMTPDGFFKSGDVGVMDASGYVKIVDRKKDMILVSGFNVYPNELEGVIAAHP
GVLECAAIGVPDDYSGEAVKVFVVRKDPNLTEAELMAYCKEQLTGYKKPKYIEFREELPK
TNVGKILRRMLRDEAPGEKKKAA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory