SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_072909552.1 NCBI__GCF_900142125.1:WP_072909552.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

Q9KNV2 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
51% identity, 97% coverage: 2:349/360 of query aligns to 1:348/361 of Q9KNV2

query
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Q9KNV2

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N41 (≠ T44) binding NAD(+)
DGEQYK 70:75 (≠ DGEEHK 73:78) binding NAD(+)
GVIGD 104:108 (= GVIGD 107:111) binding NAD(+)
TT 128:129 (= TT 131:132) binding NAD(+)
K141 (= K144) binding NAD(+)
KN 150:151 (= KN 153:154) binding NAD(+)
CLTT 168:171 (≠ TLSS 171:174) binding NAD(+)

3okfA 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase (arob) from vibrio cholerae
51% identity, 97% coverage: 2:349/360 of query aligns to 2:347/360 of 3okfA

query
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3okfA

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active site: R120 (= R122), K142 (= K144), E184 (= E186), K226 (= K228), R238 (= R242), N242 (= N246), H245 (= H249), H249 (= H253), H262 (= H266)
binding nicotinamide-adenine-dinucleotide: N42 (≠ T44), L48 (= L50), D71 (= D73), E73 (= E75), K76 (= K78), G104 (= G106), G105 (= G107), V106 (= V108), D109 (= D111), T129 (= T131), T130 (= T132), L132 (= L134), D136 (= D138), T172 (≠ S174), L173 (= L175), E177 (= E179)

U3KRF2 3-dehydroquinate synthase, chloroplastic; EC 4.2.3.4 from Actinidia chinensis var. chinensis (Chinese soft-hair kiwi) (see paper)
49% identity, 93% coverage: 5:338/360 of query aligns to 84:419/445 of U3KRF2

query
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U3KRF2

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N122 (≠ T44) binding NAD(+)
DGE 153:155 (= DGE 73:75) binding NAD(+)
K158 (= K78) binding NAD(+)
GGVIGD 186:191 (= GGVIGD 106:111) binding NAD(+)
TT 211:212 (= TT 131:132) binding NAD(+)
K224 (= K144) binding NAD(+)
K233 (= K153) binding NAD(+)
TLNT 251:254 (≠ TLSS 171:174) binding NAD(+)
K308 (= K228) binding NAD(+)

3zokA Structure of 3-dehydroquinate synthase from actinidia chinensis in complex with NAD (see paper)
47% identity, 98% coverage: 5:357/360 of query aligns to 4:359/365 of 3zokA

query
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3zokA

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L

A

A

E
|
E

V

V

K

K

Y

Y

G

G

V

L

I

I

K

R

D

D

K

A

T

N

F

F

S

E

W

W

L

Q

E

E

K

K

E

N

Y

M

K

P

A

A

L

L

Q

M

N

A

R

R

D

D

T

P

L

S

A

A

L

L

I

A

E

Y

V

A

V

I

K

K

K

R

S

S

C

C

Q

E

I

N

K
|
K

A

A

D

E

I

V

V

V

E

S

V

L

D

D

E

E

K

K

E
|
E

G

S

S

G

I

L

R
|
R

A

A

F

T

L

L

N
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N

Y

L

G

G

H
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H

T

T

F

F

G

G

H
|
H

A

A

V

I

E

E

A

T

L

G

S

F

G

G

Y

Y

G

G

Q

Q

W

W

K

L

H
|
H

G

G

E

E

A

A

V

V

S

A

V

A

G

G

M

M

V

V

V

M

A

A

A

V

K

D

I

M

A

S

A

Y

E

R

R

L

G

G

L

W

C

I

S

D

V

E

E

S

D

I

V

V

Q

N

R

R

I

A

I

H

D

N

L

I

L

L

L

Q

K

Q

L

A

D

K

L

L

P

P

V

T

E

A

P

P

K

E

-

T

H

M

S

T

L

V

Q

E

D

M

Y

F

V

K

T

S

A

V

M

M

Q

A

R

V

D

D

K

K

V

V

K

A

Q

D

G

G

T

L

L

L

T

R

M

L

V

I

L

L

N

L

E

K

G

G

-

P

I

L

G

G

K

N

V

C

Q

V

L

F

T

T

K

G

I

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P

Y

D

D

I

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S

A

V

L

F

D

S

E

T

T

I

L

active site: R122 (= R122), K144 (= K144), E186 (= E186), K228 (= K228), E238 (= E238), R242 (= R242), N246 (= N246), H249 (= H249), H253 (= H253), H266 (= H266)
binding glycine: K144 (= K144), K228 (= K228), R242 (= R242)
binding nicotinamide-adenine-dinucleotide: T44 (≠ V46), V45 (= V47), D73 (= D73), E75 (= E75), K78 (= K78), G106 (= G106), G107 (= G107), V108 (= V108), D111 (= D111), T131 (= T131), T132 (= T132), M134 (≠ L134), D138 (= D138), S139 (= S139), K144 (= K144), K153 (= K153), T174 (≠ S174), L175 (= L175), E179 (= E179), H266 (= H266)

5eksA Structure of 3-dehydroquinate synthase from acinetobacter baumannii in complex with NAD
48% identity, 99% coverage: 2:359/360 of query aligns to 2:351/355 of 5eksA

query
sites
5eksA

V

M

E

Q

K

T

I

L

T

H

V

V

P

E

L

L

G

G

S

E

R

R

S

R

Y

Y

P

P

I

I

I

F

I

I

G

G

A

S

D

Q

V

L

L

D

P

P

S

-

I

-

G

-

E

K

R

Q

L

L

E

E

I

P

E

Y

F

I

P

H

-

G

R

Q

V

V

A

M

V

I

V

V

S

S

T
x
N

A

V

V

T

V
|
V

A

A

K

P

L

L

Y

Y

G

L

G

S

I

H

I

Y

G

Q

K

E

S

A

L

L

Q

E

R

S

A

L

G

G

F

K

E

T

F

V

I

A

E

T

I

C

N

I

L

L

P

P

D
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D

G

G

E
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E

E

K

H

Y

K
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K

N

D

L

I

Q

Q

T

H

L

L

E

N

S

L

I

I

Y

F

D

D

E

A

L

L

I

L

K

E

N

A

N

G

F

F

D

N

R

R

G

D

T

C

G

T

L

V

I

L

A

A

L

L

G

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G
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G

V
|
V

I

I

G

G

D
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D

M

M

V

A

G

G

F

F

A

A

A

S

A

A

T

C

F

F

L

Q

R
|
R

G

G

I

V

P

Y

F

F

A

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Q

Q

V

V

P

P

T
|
T

L

L

A

S

Q

Q

V

V

D
|
D

S
|
S

S

S

V

V

G

G

K
|
K

T

T

A

G

V

I

N

N

H

H

P

P

L

L

G

G

K

K

N

N

L

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I

L

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G

A

A

F

F

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D

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A

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T

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P

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R

R

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|
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S

A

A

G

G

M

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A

A

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|
E

V

V

V

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K

Y

Y

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D

D

K

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W

L

L

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N

Y

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L

L

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D

T

A

L

D

A

L

L

L

I

A

E

E

V

A

V

V

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Y

K

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S

S

C

C

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K
|
K

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I

I

V

V

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A

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N

D

D

E

E

K

K

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E

G

-

S

-

I

-

R
|
R

A

A

F

L

L

L

N
|
N

Y

L

G

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H
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H

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T

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F

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G

H
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H

A

A

V

I

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E

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Y

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L

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G

Y

Y

G

G

Q

T

W

W

K

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H
|
H

G

G

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E

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A

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V

S

A

V

T

G

G

M

M

V

V

V

M

A

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K

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I

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N

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D

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V

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A

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D

K

L

I

L

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K

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L

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D

N

L

L

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P

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S

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C

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P

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L

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D

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A

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M

M

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A

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D

D

K

K

V

V

K

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Q

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-

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-

L

L

T

R

M

L

V

V

L

L

N

L

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K

G

Q

I

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G

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A

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I

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T

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K

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D

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A

active site: R120 (= R122), K142 (= K144), E184 (= E186), K226 (= K228), R237 (= R242), N241 (= N246), H244 (= H249), H248 (= H253), H261 (= H266)
binding magnesium ion: E184 (= E186), H244 (= H249), H261 (= H266)
binding nicotinamide-adenine-dinucleotide: N42 (≠ T44), V45 (= V47), D71 (= D73), E73 (= E75), K76 (= K78), G104 (= G106), G105 (= G107), V106 (= V108), D109 (= D111), T129 (= T131), T130 (= T132), D136 (= D138), S137 (= S139), K142 (= K144), T172 (≠ S174), L173 (= L175), E177 (= E179)

6llaB Crystal structure of providencia alcalifaciens 3-dehydroquinate synthase (dhqs) in complex with mg2+ and NAD (see paper)
48% identity, 99% coverage: 2:357/360 of query aligns to 2:358/363 of 6llaB

query
sites
6llaB

V

M

E

E

K

K

I

V

T

T

V

V

P

T

L

L

G

D

S

E

R

R

S

S

Y

Y

P

P

I

I

I

-

G

-

A

-

D

N

V

I

L

A

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P

S

S

I

L

G

Y

E

Q

R

Q

-

Q

-

D

-

A

L

F

L

W

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I

L

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F

A

P

G

R

Q

R

R

V

A

A

M

V

I

V

V

S

T

T

N

A

E

V

T

V
x
L

A

A

K

P

L

L

Y

Y

G

L

G

H

I

K

I

I

G

Q

K

T

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E

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N

I

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D

G

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E

E

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K

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L

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T

I

L

M

E

N

S

D

I

V

Y

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L

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N

K

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R

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D

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T

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L

I

I

A

A

L

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G
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G

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V

I

I

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D
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D

M

L

V

T

G

G

F

F

A

A

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L

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R
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R

G

G

I

V

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R

F

F

A

I

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Q

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P

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|
T

L

L

L
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L

A

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Q

Q

V

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D
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D

S

S

V

V

G

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K
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K

T

T

A

A

V

V

N

N

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H

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P

L

L

G

G

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K

N

N

L

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I

I

G

G

A

A

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V

L

V

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I

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D

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A

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C

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x
T

L
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L

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P

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R

R

E
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E

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L

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S

A

S

G

G

M

L

A

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E

V

V

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K

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Y

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G

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I

I

I

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L

D

D

K

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W

W

L

L

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K

E

E

N

Y

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D

A

A

L

L

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M

N

A

R

L

D

D

T

N

L

Q

A

A

L

M

I

A

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Y

V

C

V

I

K

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S

C

C

C

Q

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I

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K
|
K

A

A

D

Q

I

V

V

V

E

A

V

A

D

D

E

E

K

K

E
|
E

G

T

S

S

-

G

I

L

R
|
R

A

A

F

L

L

L

N
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N

Y

L

G

G

H
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H

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T

F

F

G

G

H
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H

A

A

V

I

E

E

A

A

L

E

S

M

G

G

Y

Y

G

G

Q

V

W

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K

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H
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H

G

G

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E

A

A

V

V

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A

V

A

G

G

M

M

V

V

V

M

A

A

K

K

I

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A

A

A

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E

L

R

I

G

G

L

Q

C

F

S

T

V

P

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D

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T

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I

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D

A

L

L

L

K

K

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L

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D

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L

L

P

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V

V

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T

-

G

P

P

P

A

K

K

H

M

S

Q

L

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Q

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D

D

Y

Y

V

L

T

P

A

H

M

M

Q

M

R

R

D

D

K

K

V

V

K

M

Q

G

G

G

T

K

L

L

T

H

M

L

V

I

L

L

N

P

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T

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T

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I

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K

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I

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A

I

I

active site: R121 (= R122), K143 (= K144), E185 (= E186), K227 (= K228), E237 (= E238), R242 (= R242), N246 (= N246), H249 (= H249), H253 (= H253), H266 (= H266)
binding magnesium ion: E185 (= E186), H249 (= H249), H266 (= H266)
binding nicotinamide-adenine-dinucleotide: L46 (≠ V47), D72 (= D73), E74 (= E75), K77 (= K78), G105 (= G106), G106 (= G107), V107 (= V108), D110 (= D111), T130 (= T131), T131 (= T132), L133 (= L134), D137 (= D138), K143 (= K144), T173 (≠ S174), L174 (= L175), E178 (= E179)

6lk2A Crystal structure of providencia alcalifaciens 3-dehydroquinate synthase (dhqs) in complex with mg2+, NAD and chlorogenic acid (see paper)
48% identity, 99% coverage: 2:357/360 of query aligns to 2:354/357 of 6lk2A

query
sites
6lk2A

V

M

E

E

K

K

I

V

T

T

V

V

P

T

L

L

G

D

S

E

R

R

S

S

Y

Y

P

P

I

I

I

-

G

-

A

-

D

N

V

I

L

A

P

P

S

S

I

L

G

Y

E

Q

R

Q

-

Q

-

D

-

A

L

F

L

W

E

P

I

L

E

T

F

A

P

G

R

Q

R

R

V

A

A

M

V

I

V

V

S

T

T

N

A

E

V

T

V
x
L

A

A

K

P

L

L

Y

Y

G

L

G

H

I

K

I

I

G

Q

K

T

S

V

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L

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R

V

A

S

G

G

F

V

E

K

F

V

I

D

E

S

I

I

N

I

L

L

P

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D

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E

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L

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I

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A

L

L

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K

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N

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R

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D

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T

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I

A

A

L

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G

V
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V

I

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D

M

L

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A

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R

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G

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F

F

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T
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T

L

L

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L

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Q

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D
|
D

S
|
S

S

S

V

V

G

G

K
|
K

T

T

A

A

V

V

N

N

H

H

P

P

L

L

G

G

K

K

N

N

L

M

I

I

G

G

A

A

F

F

Y

Y

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V

L

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D

D

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C

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L

E
x
P

P

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R

R

E
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E

V

L

S

S

A

S

G

G

M

L

A

A

E
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E

V

V

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I

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K

Y

Y

G

G

V

I

I

I

K

L

D

D

K

G

T

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F

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S

W

W

L

L

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K

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N

Y

I

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D

A

A

L

L

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M

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L

D

D

T

N

L

Q

A

A

L

M

I

A

E

Y

V

C

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I

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R

S

C

C

C

Q

E

I

L

K
|
K

A

A

D

Q

I

V

V

V

E

A

V

A

D

D

E

E

K

-

E

-

G

-

S

G

I

L

R
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R

A

A

F

L

L

L

N
|
N

Y

L

G

G

H
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H

T
|
T

F

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H

A

A

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E

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H

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A

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S

A

V

A

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G

M

M

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V

V

M

A

A

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K

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A

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R

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D

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V

L

T

P

A

H

M

M

Q

M

R

R

D

D

K

K

V

V

K

M

Q

G

G

G

T

K

L

L

T

H

M

L

V

I

L

L

N

P

E

T

G

T

I

I

G

G

K

H

V

S

Q

E

L

M

T

R

K

S

I

D

P

V

D

D

I

A

E

S

S

T

V

V

F

T

S

A

T

A

I

I

active site: R121 (= R122), K143 (= K144), E185 (= E186), K227 (= K228), R238 (= R242), N242 (= N246), H245 (= H249), H249 (= H253), H262 (= H266)
binding (1R,3R,4S,5R)-3-[3-[3,4-bis(oxidanyl)phenyl]propanoyloxy]-1,4,5-tris(oxidanyl)cyclohexane-1-carboxylic acid: D137 (= D138), E185 (= E186), K227 (= K228), R238 (= R242), N242 (= N246), H245 (= H249), T246 (= T250), H249 (= H253), H262 (= H266)
binding magnesium ion: E185 (= E186), H245 (= H249), H262 (= H266)
binding nicotinamide-adenine-dinucleotide: L46 (≠ V47), D72 (= D73), E74 (= E75), K77 (= K78), G105 (= G106), G106 (= G107), V107 (= V108), D110 (= D111), T130 (= T131), T131 (= T132), L133 (= L134), D137 (= D138), S138 (= S139), C170 (≠ T171), T173 (≠ S174), L174 (= L175), P175 (≠ E176), E178 (= E179)

Q5NFS1 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
46% identity, 96% coverage: 1:346/360 of query aligns to 1:345/359 of Q5NFS1

query
sites
Q5NFS1

M

M

V

I

E

S

K

K

I

L

T

S

V

V

-

N

P

P

L

T

G

F

S

S

R

P

S

S

Y

Y

P

N

I

I

I

V

G

D

A

S

D

V

V

L

L

D

P

F

S

S

I

-

G

-

E

-

R

H

L

I

L

L

E

E

I

Y

E

V

F

T

P

N

R

K

R

Q

V

V

A

L

V

V

S

T

T
x
N

A

T

V

T

V

V

A

A

K

K

L

L

Y

Y

G

-

I

-

I

L

G

T

K

K

S

F

L

L

Q

A

R

-

A

A

G

L

F

V

E

D

F

D

I

L

E

D

I

V

N

R

-

T

-

C

-

I

L

L

P

E

D
|
D

G
|
G

E
|
E

E
x
Q

H
x
Y

K
|
K

N

S

L

Q

Q

Q

T

S

L

L

E

D

S

K

I

I

Y

L

D

S

E

T

L

L

I

L

K

E

N

N

N

H

F

F

D

T

R

R

G

N

-

S

T

T

G

V

L

L

I

V

A

A

L

L

G

G

G
|
G

V
|
V

I
|
I

G
|
G

D
|
D

M

I

V

T

G

G

F

F

A

A

T

I

F

Y

L

Q

R

R

G

G

I

I

P

D

F

F

A

I

Q

Q

V

I

P

P

T
|
T

L

L

A

S

Q

Q

V

V

D

D

S

S

V

V

G

G

K
|
K

T

T

A

A

V

I

N

N

H

H

P

Q

L

L

G

G

K

K

N

N

L

M

I

I

G

G

A

A

F

F

Y

Y

Q

Q

P

P

E

K

I

V

V

V

L

Y

I

T

D

S

V

I

A

E

T
x
F

L
x
Y

S
x
K

S
x
T

L

L

E

P

P

Q

R

R

E

E

V

Y

S

I

A

A

G

G

M

M

A

A

E

E

V

V

K

K

Y

Y

G

A

V

F

I

I

K

S

D

-

K

K

T

D

F

F

F

Y

S

L

W

W

L

L

E

D

K

S

E

N

Y

R

K

D

A

K

L

I

Q

L

N

A

R

K

D

D

T

S

L

V

A

T

L

L

I

I

E

E

V

M

V

V

K

K

K

R

S

S

C

C

Q

Q

I

I

K

K

A

A

D

Q

I

V

V

V

E

A

V

M

D

D

E

E

K

K

E

E

G

L

S

T

-

G

I

A

R

R

A

A

F

I

L

L

N

N

Y

F

G

G

H

H

T

T

F

F

G

G

H

H

A

A

V

I

E

E

A

K

L

C

S

Q

G

N

Y

Y

G

R

Q

G

W

L

K

K

H

H

G

G

E

E

A

A

V

V

S

G

V

V

G

G

M

M

V

A

V

Q

A

A

A

I

K

D

I

F

A

S

A

H

E

Y

R

L

G

G

L

L

C

I

S

S

V

Q

E

Q

D

Q

V

A

Q

K

R

D

I

F

I

N

D

D

L

F

L

I

L

V

K

S

L

F

D

G

L

I

P

S

V

I

E

D

P

F

P

P

K

N

H

D

S

I

L

C

Q

Q

-

K

D

E

Y

F

V

L

T

E

A

A

M

M

Q

L

R

L

D

D

K

K

V

N

K

S

Q

N

G

K

T

E

L

L

T

K

M

F

V

I

L

L

N

I

E

E

G

N

I

I

G

G

K

S

V

L

Q

S

L

L

T

Q

K

K

N42 (≠ T44) binding NAD(+)
DGEQYK 70:75 (≠ DGEEHK 73:78) binding NAD(+)
GVIGD 105:109 (= GVIGD 107:111) binding NAD(+)
TT 129:130 (= TT 131:132) binding NAD(+)
K142 (= K144) binding NAD(+)
FYKT 169:172 (≠ TLSS 171:174) binding NAD(+)

5hvnA 3.0 angstrom crystal structure of 3-dehydroquinate synthase (arob) from francisella tularensis in complex with NAD.
45% identity, 96% coverage: 1:346/360 of query aligns to 4:340/354 of 5hvnA

query
sites
5hvnA

M

M

V

I

E

S

K

K

I

L

T

S

V

V

-

N

P

P

L

T

G

F

S

S

R

P

S

S

Y

Y

P

N

I

I

I

V

G

D

A

S

D

V

V

L

L

D

P

F

S

S

I

-

G

-

E

-

R

H

L

I

L

L

E

E

I

Y

E

V

F

T

P

N

R

K

R

Q

V

V

A

L

V

V

S

T

T
x
N

A

T

V

T

V

V

A

A

K

K

L
|
L

Y

Y

G

-

I

-

I

L

G

T

K

K

S

F

L

L

Q

-

R

A

A

A

G

L

F

V

E

D

F

D

I

L

E

D

I

V

N

R

-

T

-

C

-

I

L

L

P

E

D
|
D

G

G

E
|
E

E

Q

H

Y

K
|
K

N

S

L

Q

Q

Q

T

S

L

L

E

D

S

K

I

I

Y

L

D

S

E

T

L

L

I

L

K

E

N

N

N

H

F

F

D

T

R

R

G

N

-

S

T

T

G

V

L

L

I

V

A

A

L

L

G

G

G
|
G

V
|
V

I

I

G

G

D
|
D

M

I

V

T

G

G

F

F

A

A

T

I

F

Y

L

Q

R
|
R

G

G

I

I

P

D

F

F

A

I

Q

Q

V

I

P

P

T
|
T

L

L

L
|
L

A

S

Q

Q

V

V

D
|
D

S

S

V

V

G

G

K
|
K

T

T

A

A

V

I

N

N

H

H

P

Q

L

L

G

G

K

K

N

N

L

M

I

I

G

G

A

A

F

F

Y

Y

Q

Q

P

P

E

K

I

V

V

V

L

Y

I

T

D

S

V

I

A

E

T
x
F

L

Y

S

K

S
x
T

L
|
L

E

P

P

Q

R

R

E
|
E

V

Y

S

I

A

A

G

G

M

M

A

A

E
|
E

V

V

K

K

Y

Y

G

A

V

F

I

I

K

S

D

-

K

K

T

D

F

F

F

Y

S

L

W

W

L

L

E

D

K

S

E

N

Y

R

K

D

A

K

L

I

Q

L

N

A

R

K

D

D

T

S

L

V

A

T

L

L

I

I

E

E

V

M

V

V

K

K

K

R

S

S

C

C

Q

Q

I

I

K
|
K

A

A

D

Q

I

V

V

V

E

A

V

M

D

D

E

T

K

-

E

-

G

-

S

G

I

A

R
|
R

A

A

F

I

L

L

N
|
N

Y

F

G

G

H
|
H

T

T

F

F

G

G

H
|
H

A

A

V

I

E

E

A

K

L

C

S

Q

G

N

Y

Y

G

R

Q

G

W

L

K

K

H
|
H

G

G

E

E

A

A

V

V

S

G

V

V

G

G

M

M

V

A

V

Q

A

A

A

I

K

D

I

F

A

S

A

H

E

Y

R

L

G

G

L

L

C

I

S

S

V

Q

E

Q

D

Q

V

A

Q

K

R

D

I

F

I

N

D

D

L

F

L

I

L

V

K

S

L

F

D

G

L

I

P

S

V

I

E

D

P

F

P

P

K

N

H

D

S

I

L

C

Q

Q

-

K

D

E

Y

F

V

L

T

E

A

A

M

M

Q

L

R

L

D

D

K

N

K

K

V

-

K

-

Q

-

G

-

T

E

L

L

T

K

M

F

V

I

L

L

N

I

E

E

G

N

I

I

G

G

K

S

V

L

Q

S

L

L

T

Q

K

K

active site: R123 (= R122), K145 (= K144), E187 (= E186), K228 (= K228), R239 (= R242), N243 (= N246), H246 (= H249), H250 (= H253), H263 (= H266)
binding nicotinamide-adenine-dinucleotide: N45 (≠ T44), L51 (= L50), D73 (= D73), E75 (= E75), K78 (= K78), G107 (= G106), G108 (= G107), V109 (= V108), D112 (= D111), T132 (= T131), T133 (= T132), L135 (= L134), D139 (= D138), K145 (= K144), F172 (≠ T171), T175 (≠ S174), L176 (= L175), E180 (= E179)

P56081 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) (see paper)
41% identity, 96% coverage: 2:348/360 of query aligns to 1:331/343 of P56081

query
sites
P56081

V

M

E

Q

K

E

I

I

T

L

V

I

P

P

L

L

G

K

S

E

R

K

S

N

Y

Y

P

K

I

V

I

F

I

L

G

G

A

E

D

-

V

-

L

L

P

P

S

-

I

-

G

-

E

-

R

-

L

-

E

E

I

I

E

K

F

L

P

K

R

Q

R

K

V

A

A

L

V

I

S

S

T

D

A

S

V

I

V

V

A

A

K

G

L

L

Y

H

G

L

G

P

I

Y

I

L

G

L

K

E

S

R

L

L

Q

K

R

-

A

-

G

A

F

L

E

E

F

V

I

R

E

V

I

C

N

V

L

I

P

E

D
x
S

G
|
G

E
|
E

E
x
K

H
x
Y

K
|
K

N

N

L

F

Q

H

T

S

L

L

E

E

S

R

I

I

Y

L

D

N

E

N

L

A

I

F

K

E

N

M

N

Q

F

L

D

N

R

R

G

H

T

S

G

L

L

M

I

I

A

A

L

L

G

G

G
|
G

V
|
V

I

I

G

S

D

D

M

M

V

V

G

G

F

F

A

A

A

S

T

I

F

Y

L

F

R

R

G

G

I

I

P

D

F

F

A

I

Q

N

V

I

P

P

T
|
T

L

L

A

A

Q

Q

V

V

D

D

S

A

S

S

V

V

G

G

K

K

T

T

A

G

V

I

N

N

H

T

P

P

L

Y

G

G

K

K

N
|
N

L

L

I

I

G

G

A

S

F

F

Y

H

Q

Q

P

P

E

K

I

A

V

V

L

Y

I

M

D

D

V

L

A

A

T
x
F

L
|
L

S
x
K

S
x
T

L

L

E

E

P

K

R

R

E

E

V

F

S

Q

A

A

G

G

M

V

A

A

E

E

V

I

K

K

Y

M

G

A

V

V

I

C

K

F

D

D

K

K

T

N

F

L

F

V

S

E

W

R

L

L

E

E

K

T

E

-

Y

-

K

K

A

D

L

L

Q

K

N

D

R

-

D

-

T

-

L

-

A

C

L

L

I

E

E

E

V

V

V

I

K

F

K

Q

S

S

C

V

Q

N

I

I

K

K

A

A

D

Q

I

V

V

V

E

V

V

Q

D

D

E

E

K

K

E

E

G

Q

S

N

I

I

R

R

A

A

F

G

L

L

N

N

Y

Y

G

G

H

H

T

T

F

F

G

G

H

H

A

A

V

I

E

E

A

K

L

E

S

T

G

D

Y

Y

G

E

Q

R

W

F

K

L

H

H

G

G

E

E

A

A

V

I

S

A

V

I

G

G

M

M

V

R

V

M

A

A

A

N

K

D

I

L

A

A

A

L

E

S

R

L

G

G

L

M

C

L

S

T

V

L

E

K

D

E

V

Y

Q

E

R

R

I

I

I

E

D

N

L

L

L

K

K

K

L

F

D

D

L

L

P

I

V

F

E

H

P

Y

P

K

K

I

H

L

S

D

L

L

Q

Q

D

K

Y

F

V

Y

T

E

A

R

M

L

Q

F

R

L

D

D

K

K

V

S

K

E

Q

N

G

K

T

T

L

I

T

K

M

F

V

I

L

L

N

P

E

K

G

G

I

V

G

G

K

A

V

F

Q

E

L

V

-

A

T

S

K

H

I

I

P

P

SGEKYK 61:66 (≠ DGEEHK 73:78) binding NAD(+)
GV 95:96 (= GV 107:108) binding NAD(+)
TT 119:120 (= TT 131:132) binding NAD(+)
N142 (= N154) binding NAD(+)
FLKT 159:162 (≠ TLSS 171:174) binding NAD(+)

3clhA Crystal structure of 3-dehydroquinate synthase (dhqs)from helicobacter pylori (see paper)
42% identity, 83% coverage: 5:304/360 of query aligns to 1:274/308 of 3clhA

query
sites
3clhA

I

I

T

L

V

I

P

P

L

L

G

K

S

E

R

K

S

N

Y

Y

P

K

I

V

I

F

I

L

G

G

A

E

D

-

V

-

L

L

P

P

S

-

I

-

G

-

E

-

R

-

L

-

E

E

I

I

E

K

F

L

P

K

R

Q

R

K

V

A

A

L

V

I

S

S

T

D

A

S

V
x
I

V
|
V

A

A

K

G

L

L

Y
x
H

G

L

G

P

I

Y

I

L

G

L

K

E

S

R

L

L

Q

K

R

-

A

-

G

A

F

L

E

E

F

V

I

R

E

V

I

C

N

V

L

I

P

E

D
x
S

G

G

E
|
E

E

K

H

Y

K
|
K

N

N

L

F

Q

H

T

S

L

L

E

E

S

R

I

I

Y

L

D

N

E

N

L

A

I

F

K

E

N

M

N

Q

F

L

D

N

R

R

G

H

T

S

G

L

L

M

I

I

A

A

L

L

G

G

G
|
G

V
|
V

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active site: R107 (= R122), K129 (= K144), E171 (= E186), K207 (= K228), R212 (= R242), N216 (= N246), H219 (= H249), H223 (= H253), H236 (= H266)
binding nicotinamide-adenine-dinucleotide: I33 (≠ V46), V34 (= V47), H38 (≠ Y51), S58 (≠ D73), E60 (= E75), K63 (= K78), G91 (= G106), G92 (= G107), V93 (= V108), D96 (= D111), T116 (= T131), T117 (= T132), L119 (= L134), D123 (= D138), A124 (≠ S139), K129 (= K144), N139 (= N154), T159 (≠ S174), L160 (= L175), E164 (= E179)

P9WPX9 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
42% identity, 82% coverage: 55:349/360 of query aligns to 55:348/362 of P9WPX9

query
sites
P9WPX9

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DAEAGK 73:78 (≠ DGEEHK 73:78) binding NAD(+)
GAATD 107:111 (≠ GVIGD 107:111) binding NAD(+)
TT 131:132 (= TT 131:132) binding NAD(+)
K144 (= K144) binding NAD(+)
TLQT 171:174 (≠ TLSS 171:174) binding NAD(+)

Sites not aligning to the query:

45 binding NAD(+)

3qbeA Crystal structure of the 3-dehydroquinate synthase (arob) from mycobacterium tuberculosis
41% identity, 82% coverage: 55:349/360 of query aligns to 50:339/352 of 3qbeA

query
sites
3qbeA

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