SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_072909984.1 NCBI__GCF_900142125.1:WP_072909984.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 5 hits to proteins with known functional sites (download)

7zc6C Na+ - translocating ferredoxin: NAD+ reductase (rnf) of c. Tetanomorphum (see paper)
47% identity, 99% coverage: 1:435/438 of query aligns to 1:435/435 of 7zc6C

query
sites
7zc6C

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binding flavin mononucleotide: G134 (= G135), K145 (= K146), N160 (= N161), C164 (= C165), G235 (= G235), A236 (= A236), Q263 (= Q263), N264 (= N264), M331 (= M331), C407 (= C407)
binding iron/sulfur cluster: C365 (= C365), I366 (= I366), C368 (= C368), C371 (= C371), C375 (= C375), T382 (= T382), C404 (= C404), E406 (= E406), C407 (= C407), C410 (= C410), C414 (= C414)

8rbqC Cryo-em structure of the nadh:ferredoxin oxidoreductase rnf from azotobacter vinelandii, dithionite reduced (see paper)
44% identity, 98% coverage: 1:429/438 of query aligns to 2:433/477 of 8rbqC

query
sites
8rbqC

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binding flavin mononucleotide: G138 (= G135), G140 (= G137), N164 (= N161), C168 (= C165), G239 (= G235), S240 (≠ A236), N268 (= N264), C411 (= C407)
binding iron/sulfur cluster: C369 (= C365), I370 (= I366), R371 (= R367), C372 (= C368), A373 (≠ G369), C375 (= C371), C379 (= C375), P380 (= P376), L383 (= L379), C408 (= C404), I409 (= I405), L410 (≠ E406), C411 (= C407), C414 (= C410), C418 (= C414), P419 (= P415), S420 (≠ A416)

8rbmC Cryo-em structure of the nadh:ferredoxin oxidoreductase rnf from azotobacter vinelandii, ferricyanide oxidized (see paper)
44% identity, 98% coverage: 1:429/438 of query aligns to 2:433/446 of 8rbmC

query
sites
8rbmC

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E

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Q

H

D

E

L

L

P

P

R

N

K

K

N

D

A

P

G

A

P

P

C
|
C

I
|
I

R
|
R

C
|
C

G
x
A

R
x
S

C
|
C

I

V

S

D

V

A

C
|
C

P
|
P

I

M

H

G

L
|
L

Q

T

P

P

T

L

T

D

I

M

A

A

A

L

Y

Y

A

A

R
|
R

L

A

D

D

R

D

V

Y

D

D

E

G

A

A

E

S

S

E

Y

Y

N

G

A

L

L

R

D

D

C
|
C

I
|
I

E
x
L

C
|
C

G

G

C

C

C
|
C

T

S

Y

Y

I

V

C
|
C

P
|
P

A
x
S

T

H

L

I

P

P

L

L

V

V

Q
x
H

S
x
Y

I

F

R

Q

H
x
Y

I

A

K

K

G

G

binding flavin mononucleotide: G138 (= G135), G140 (= G137), N164 (= N161), C168 (= C165), G239 (= G235), S240 (≠ A236), H267 (≠ Q263), N268 (= N264), M335 (= M331), C411 (= C407)
binding iron/sulfur cluster: C369 (= C365), I370 (= I366), R371 (= R367), C372 (= C368), A373 (≠ G369), S374 (≠ R370), C375 (= C371), C379 (= C375), P380 (= P376), L383 (= L379), C408 (= C404), I409 (= I405), L410 (≠ E406), C411 (= C407), C414 (= C410), C418 (= C414), P419 (= P415), S420 (≠ A416)
binding : H91 (= H88), S93 (≠ M90), L95 (≠ K92), R393 (= R389), H426 (≠ Q422), Y427 (≠ S423), Y430 (≠ H426)

Sites not aligning to the query:

binding : 436, 437

B1VB77 Cobalamin reductase PduS; Corrin reductase; Propanediol utilization protein PduS from Citrobacter freundii (see paper)
32% identity, 73% coverage: 120:437/438 of query aligns to 13:343/451 of B1VB77

query
sites
B1VB77

D

D

A

A

D

Q

A

T

L

I

K

R

K

E

L

R

I

V

G

R

Q

A

A

A

G

G

I

V

V

V

G

G

M

A

G

G

G

G

A

A

T

G

F

F

P

P

A

A

H

H

V

V

K

K

L

L

S

Q

P

-

P

-

E

-

G

-

K

A

K

Q

I

V

D

D

T

T

L

F

I

L

L

V

N

N

G

A

V

A

E

E

C
|
C

E

E

P

P

Y

M

L

L

T

K

A

V

D

D

H

Q

R

Q

M

L

M

M

L

A

E

V

E

Q

S

A

E

E

R

R

I

L

I

I

D

R

G

G

I

V

K

Q

I

Y

V

A

R

M

K

T

V

A

L

T

G

G

L

A

E

R

T

A

A

G

I

I

I

I

G

A

I

L

E

K

I

E

N

K

K

Y

P

Q

D

R

A

A

I

I

E

N

K

A

L

L

A

T

K

P

E

-

C

L

A

L

P

P

H

A

N

G

I

I

K

R

V

L

Q

H

P

I

L

L

K

P

V

D

Q

V

Y

Y

P

P

Q

A

G

G

A

D

E

E

K

V

Q

L

L

T

I

I

D

W

A

M

C

A

T

T

G

G

R

R

Q

R

V

V

P

P

T

P

G

A

G

A

L

L

P

P

M

V

D

S

C

V

G

G

V

V

V

V

V

V

Q

N

N

N

V

V

G

Q

T

T

C

V

A

L

A

N

I

I

S

T

D

R

A

A

I

V

R

E

L

Q

G

Q

R

Y

P

P

L

V

V

T

E

R

R

R

V

T

A

L

T

T

V

V

T

N

G

G

P

-

G

A

I

V

R

A

N

R

P

P

K

I

N

T

L

L

L

T

I

V

A

P

V

I

G

G

T

M

P

S

L

L

K

R

H

E

M

V

L

L

D

A

Q

L

C

A

D

G

G

G

L

A

D

T

G

V

K

D

P

D

A

P

K

G

I

F

I

I

M

N

G

G

G

G

P

P

M

M

M

M

G

G

Q

G

T

L

Q

I

L

T

S

S

L

L

D

D

V

T

P

P

A

V

I

S

R

K

G

T

T

T

S

G

G

G

L

L

L

L

I

V

F

L

-

P

-

K

-

S

-

H

-

A

-

L

-

I

-

Q

-

R

R

R

E

M

Q

Q

D

D

-

E

-

R

-

T

L

V

P

L

R

S

K

V

N

A

A

K

G

T

P

V

C
|
C

I

E

R

Q

C
|
C

G

R

R

L

C
|
C

I

T

S

D

V

L

C
|
C

P

P

I

R

H

H

L

L

Q

I

P

G

T

H

T

E

I

L

A

S

A

P

Y

H

A

L

R

L

L

V

D

R

R

A

V

V

D

N

E

Y

A

Q

E

Q

S

A

-

A

-

T

-

P

-

Q

-

L

-

L

Y

L

N

T

A

A

L

L

D

T

C
|
C

I

S

E

E

C
|
C

G

N

C

V

C
|
C

T

E

Y

S

I

V

-

A

C
|
C

P

P

A

V

T

G

L

I

P

S

L

P

V

M

Q

R

S

I

I

N

R

R

H

M

I

L

K

K

G

R

G

E

I

L

M

R

A

A

K

L

R

N

R

H

K

R

C54 (= C165) mutation to A: Colorless protein, no 4Fe-4S centers, no cobalamin reductase activity.
C264 (= C365) mutation to A: Colorless protein, no 4Fe-4S centers, no cobalamin reductase activity.
C267 (= C368) mutation to A: Colorless protein, no 4Fe-4S centers, no cobalamin reductase activity.
C270 (= C371) mutation to A: Colorless protein, no 4Fe-4S centers, no cobalamin reductase activity.
C274 (= C375) mutation to A: Colorless protein, no 4Fe-4S centers, no cobalamin reductase activity.
C309 (= C404) mutation to A: Colorless protein, no 4Fe-4S centers, no cobalamin reductase activity.
C312 (= C407) mutation to A: Colorless protein, no 4Fe-4S centers, no cobalamin reductase activity.
C315 (= C410) mutation to A: Colorless protein, no 4Fe-4S centers, no cobalamin reductase activity.
C320 (= C414) mutation to A: Colorless protein, no 4Fe-4S centers, no cobalamin reductase activity.

7arcF Cryo-em structure of polytomella complex-i (peripheral arm) (see paper)
26% identity, 36% coverage: 122:278/438 of query aligns to 48:232/430 of 7arcF

query
sites
7arcF

D

D

A

W

L

I

K

I

K

D

L

Q

I

I

G

K

Q

K

A

S

G

G

I

L

V

R

G
|
G

M
x
R

G

G

G

G

A

A

T

G

F

F

P

A

A

S

H

G

V

L

K
|
K

L

W

S

S

-

F

-

M

-

P

P

K

P

V

E

S

G

D

K

G

K

R

I

P

D

S

T

Y

L

L

I

V

L

V

N
|
N

G

G

V
x
D

E
|
E

C
x
S

E

E

P

P

Y

G

L

T

T

C

A

K

D

D

H

R

R

E

M

I

M

M

L

R

E

H

E

E

S

P

E

H

R

K

I

L

I

V

D

E

G

G

I

C

K

L

I

V

V

A

R

G

K

T

V

A

L

M

G

G

L

A

E

R

T

A

A

G

I

Y

I

I

G

Y

I

I

E

R

-

G

-

E

-

F

I

V

N

N

K

E

P

R

D

K

A

A

I

V

E

E

K

R

-

A

-

V

-

A

-

E

-

A

-

Y

-

A

-

K

-

G

-

Y

L

L

A

G

K

K

E

N

C

A

A

C

P

G

H

S

N

G

I

V

K

D

V

F

Q

D

P

-

L

L

K

F

V

V

Q

H

Y

Y

P

G

Q

A

G

G

A

A

-
x
Y

-

I

-

C

-
x
G

-
x
E

E

E

K

T

Q

A

L

L

I

I

D

E

A

S

C

L

T

E

G

G

R

K

Q

Q

-

G

-

K

-

P

-

R

-

L

-

K

-

P

-

P

V

F

P

P

T

A

G

G

G

M

L

G

P

L

M

Y

D

G

C

C

G

P

V

T

V

T

V

V

Q
x
T

N
|
N

V

V

G

E

T

T

C

V

A

A

A

V

I

S

S

P

D

T

A

I

I

L

R

R

L

R

G

G

binding flavin mononucleotide: G61 (= G135), R62 (≠ M136), K72 (= K146), N90 (= N161), D92 (≠ V163), E93 (= E164), S94 (≠ C165), Y178 (vs. gap), G181 (vs. gap), E182 (vs. gap), T217 (≠ Q263), N218 (= N264)

Sites not aligning to the query:

binding flavin mononucleotide: 401
binding iron/sulfur cluster: 352, 353, 354, 355, 356, 359, 397, 399, 401

Query Sequence

>WP_072909984.1 NCBI__GCF_900142125.1:WP_072909984.1
MDVKTFAGGLHPPDSKEYAKDKVIERCPLPDELVIPAAQHIGAPAEICVAAGDLVKKGQV
IATAKGFVSVPIHASTSGEVIAVEPRLHPMGKLLPAVVIKPDGEDQWDESLQQQDPDQLD
ADALKKLIGQAGIVGMGGATFPAHVKLSPPEGKKIDTLILNGVECEPYLTADHRMMLEES
ERIIDGIKIVRKVLGLETAIIGIEINKPDAIEKLAKECAPHNIKVQPLKVQYPQGAEKQL
IDACTGRQVPTGGLPMDCGVVVQNVGTCAAISDAIRLGRPLVERVATVTGPGIRNPKNLL
IAVGTPLKHMLDQCDGLDGKPAKIIMGGPMMGQTQLSLDVPAIRGTSGLLIFREQDLPRK
NAGPCIRCGRCISVCPIHLQPTTIAAYARLDRVDEAESYNALDCIECGCCTYICPATLPL
VQSIRHIKGGIMAKRRKI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory