Comparing WP_073038714.1 NCBI__GCF_900129305.1:WP_073038714.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
8a6tC Cryo-em structure of the electron bifurcating fe-fe hydrogenase hydabc complex from thermoanaerobacter kivui in the reduced state (see paper)
42% identity, 81% coverage: 14:161/182 of query aligns to 4:151/151 of 8a6tC
7t2rC Structure of electron bifurcating ni-fe hydrogenase complex hydabcsl in fmn-free apo state (see paper)
44% identity, 81% coverage: 13:160/182 of query aligns to 4:151/152 of 7t2rC
O52681 Bifurcating [FeFe] hydrogenase gamma subunit; Hydrogenase (NAD(+), ferredoxin) gamma subunit; Iron-hydrogenase gamma subunit; EC 1.12.1.4 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
38% identity, 89% coverage: 11:172/182 of query aligns to 2:158/161 of O52681
7p5hC Tmhydabc- d2 map (see paper)
38% identity, 87% coverage: 14:172/182 of query aligns to 2:155/156 of 7p5hC
8a5eC Cryo-em structure of the electron bifurcating fe-fe hydrogenase hydabc complex from acetobacterium woodii in the reduced state (see paper)
38% identity, 81% coverage: 14:160/182 of query aligns to 10:156/156 of 8a5eC
8oh5A Cryo-em structure of the electron bifurcating transhydrogenase stnabc complex from sporomusa ovata (state 2) (see paper)
38% identity, 77% coverage: 14:153/182 of query aligns to 3:142/150 of 8oh5A
Q9D6J6 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; NADH-ubiquinone oxidoreductase 24 kDa subunit; EC 7.1.1.2 from Mus musculus (Mouse) (see paper)
37% identity, 77% coverage: 15:154/182 of query aligns to 60:201/248 of Q9D6J6
5gupE structure of mammalian respiratory supercomplex I1III2IV1 (see paper)
36% identity, 77% coverage: 15:154/182 of query aligns to 39:180/197 of 5gupE
7v2cO Active state complex i from q10 dataset (see paper)
36% identity, 77% coverage: 15:154/182 of query aligns to 29:170/217 of 7v2cO
7dgq9 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (see paper)
36% identity, 77% coverage: 15:154/182 of query aligns to 22:163/207 of 7dgq9
Sites not aligning to the query:
P04394 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; NADH dehydrogenase subunit II; NADH-ubiquinone oxidoreductase 24 kDa subunit; EC 7.1.1.2 from Bos taurus (Bovine) (see 2 papers)
36% identity, 77% coverage: 15:154/182 of query aligns to 61:202/249 of P04394
Sites not aligning to the query:
8e9gE Mycobacterial respiratory complex i with both quinone positions modelled (see paper)
35% identity, 80% coverage: 11:156/182 of query aligns to 26:171/233 of 8e9gE
P19404 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; NDUFV2; NADH-ubiquinone oxidoreductase 24 kDa subunit; EC 7.1.1.2 from Homo sapiens (Human) (see 2 papers)
35% identity, 77% coverage: 15:154/182 of query aligns to 61:202/249 of P19404
Sites not aligning to the query:
Q56221 NADH-quinone oxidoreductase subunit 2; NADH dehydrogenase I chain 2; NDH-1 subunit 2; EC 7.1.1.- from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 2 papers)
37% identity, 65% coverage: 25:143/182 of query aligns to 21:139/181 of Q56221
Sites not aligning to the query:
3iam2 Crystal structure of the hydrophilic domain of respiratory complex i from thermus thermophilus, reduced, 2 mol/asu, with bound nadh (see paper)
37% identity, 65% coverage: 25:143/182 of query aligns to 20:138/179 of 3iam2
3i9v2 Crystal structure of the hydrophilic domain of respiratory complex i from thermus thermophilus, oxidized, 2 mol/asu (see paper)
37% identity, 65% coverage: 25:143/182 of query aligns to 19:137/178 of 3i9v2
8eswV2 NADH dehydrogenase (Ubiquinone) 24 kDa subunit, isoform A (see paper)
36% identity, 74% coverage: 8:142/182 of query aligns to 22:155/214 of 8eswV2
8b9zE Drosophila melanogaster complex i in the active state (dm1) (see paper)
36% identity, 74% coverage: 8:142/182 of query aligns to 22:155/214 of 8b9zE
6tg9G Cryo-em structure of nadh reduced form of NAD+-dependent formate dehydrogenase from rhodobacter capsulatus (see paper)
33% identity, 79% coverage: 17:160/182 of query aligns to 6:147/148 of 6tg9G
P9WIV5 NADH-quinone oxidoreductase subunit E; NADH dehydrogenase I subunit E; NDH-1 subunit E; EC 7.1.1.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
34% identity, 70% coverage: 23:150/182 of query aligns to 50:177/252 of P9WIV5
Sites not aligning to the query:
>WP_073038714.1 NCBI__GCF_900129305.1:WP_073038714.1
MKDDARLSEEETMLRSIEAMLPRFEKNRAQLIPILQAIQEEHQYLSREAMRLVADYLEIS
PSEVLGVATFYNQFRFHPPGRHQIKVCLGTACHVAGGDIILENFERKLGIREGETTPDRE
YSVERVACVGCCALAPVAVVDDKVIGHMQPSKIEGLFLQFDLQREQEKAREAGEEADAQA
GS
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory