SitesBLAST
Comparing WP_073040517.1 NCBI__GCF_900129305.1:WP_073040517.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
2h5aX Complex of the enzyme pmm/pgm with xylose 1-phosphate (see paper)
46% identity, 98% coverage: 6:449/452 of query aligns to 6:449/455 of 2h5aX
- active site: H101 (= H101), D234 (= D234), D236 (= D236), D238 (= D238), R239 (= R239), D332 (= D332)
- binding 1-O-phosphono-alpha-D-xylopyranose: Y9 (= Y9), T298 (= T298), G299 (= G299), H300 (= H300), E317 (= E317), S319 (= S319), H321 (= H321), R413 (= R413), S415 (= S415), N416 (= N416), T417 (= T417)
- binding zinc ion: S100 (= S100), D234 (= D234), D236 (= D236), D238 (= D238)
2h4lX Complex of pmm/pgm with ribose 1-phosphate (see paper)
46% identity, 98% coverage: 6:449/452 of query aligns to 6:449/455 of 2h4lX
- active site: H101 (= H101), D234 (= D234), D236 (= D236), D238 (= D238), R239 (= R239), D332 (= D332)
- binding 1-O-phosphono-alpha-D-ribofuranose: Y9 (= Y9), R12 (= R12), S100 (= S100), T298 (= T298), E317 (= E317), R413 (= R413), S415 (= S415), N416 (= N416), T417 (= T417)
- binding zinc ion: S100 (= S100), D234 (= D234), D236 (= D236), D238 (= D238)
2fkfA Phosphomannomutase/phosphoglucomutase from pseudomonas aeruginosa with alpha-d-glucose 1,6-bisphosphate bound (see paper)
46% identity, 98% coverage: 6:449/452 of query aligns to 6:449/455 of 2fkfA
- active site: R12 (= R12), S100 (= S100), H101 (= H101), K110 (= K110), D234 (= D234), D236 (= D236), D238 (= D238), R239 (= R239), H321 (= H321), D332 (= D332)
- binding 1,6-di-O-phosphono-alpha-D-glucopyranose: R7 (= R7), H101 (= H101), S319 (= S319), R413 (= R413), S415 (= S415), N416 (= N416), T417 (= T417)
- binding zinc ion: S100 (= S100), D234 (= D234), D236 (= D236), D238 (= D238)
1pcmX Enzyme-ligand complex of p. Aeruginosa pmm/pgm (see paper)
46% identity, 98% coverage: 6:449/452 of query aligns to 6:449/455 of 1pcmX
- active site: R12 (= R12), S100 (= S100), H101 (= H101), K110 (= K110), D234 (= D234), D236 (= D236), D238 (= D238), R239 (= R239), H321 (= H321), D332 (= D332)
- binding 6-O-phosphono-alpha-D-mannopyranose: Y9 (= Y9), S100 (= S100), T298 (= T298), G299 (= G299), H300 (= H300), E317 (= E317), S319 (= S319), H321 (= H321), R413 (= R413), S415 (= S415)
- binding zinc ion: S100 (= S100), D234 (= D234), D236 (= D236), D238 (= D238)
1p5gX Enzyme-ligand complex of p. Aeruginosa pmm/pgm (see paper)
46% identity, 98% coverage: 6:449/452 of query aligns to 6:449/455 of 1p5gX
- active site: R12 (= R12), S100 (= S100), H101 (= H101), K110 (= K110), D234 (= D234), D236 (= D236), D238 (= D238), R239 (= R239), H321 (= H321), D332 (= D332)
- binding 6-O-phosphono-alpha-D-glucopyranose: Y9 (= Y9), S100 (= S100), K277 (= K277), G299 (= G299), H300 (= H300), E317 (= E317), S319 (= S319), H321 (= H321), R413 (= R413), S415 (= S415), N416 (= N416), T417 (= T417)
- binding zinc ion: S100 (= S100), D234 (= D234), D236 (= D236), D238 (= D238)
1p5dX Enzyme-ligand complex of p. Aeruginosa pmm/pgm (see paper)
46% identity, 98% coverage: 6:449/452 of query aligns to 6:449/455 of 1p5dX
- active site: R12 (= R12), S100 (= S100), H101 (= H101), K110 (= K110), D234 (= D234), D236 (= D236), D238 (= D238), R239 (= R239), H321 (= H321), D332 (= D332)
- binding 1-O-phosphono-alpha-D-glucopyranose: Y9 (= Y9), S100 (= S100), R239 (= R239), T298 (= T298), G299 (= G299), H300 (= H300), E317 (= E317), S319 (= S319), H321 (= H321), R413 (= R413), S415 (= S415), T417 (= T417)
- binding zinc ion: S100 (= S100), D234 (= D234), D236 (= D236), D238 (= D238)
P26276 Phosphomannomutase/phosphoglucomutase; PMM / PGM; EC 5.4.2.2; EC 5.4.2.8 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 10 papers)
46% identity, 98% coverage: 6:449/452 of query aligns to 14:457/463 of P26276
- R15 (= R7) mutation to A: KM halves, decreases processivity as dissociation of G1,6P intermediate increases 25-fold.
- Y17 (= Y9) binding alpha-D-glucose 1-phosphate; binding alpha-D-mannose 1-phosphate
- R20 (= R12) mutation to A: No phosphoglucomutase activity.
- S108 (= S100) binding via phosphate group; modified: Phosphoserine; mutation S->A,V: About 5% activity, still subject to substrate inhibition and requires G1,6P as an activator; phosphorylation occurs at a different site.; mutation to C: KM for G1P unchanged, kcat decreases 24-fold; G1,6P stimulates reaction by 2-3 orders of magnitude. No stable protein phosphorylation detected, altered ligation of metal residue.
- N110 (= N102) mutation to A: KM halves, decreases processivity as dissociation of G1,6P intermediate increases 30-fold.
- D242 (= D234) binding Mg(2+)
- D244 (= D236) binding Mg(2+)
- D246 (= D238) binding Mg(2+)
- R247 (= R239) mutation to A: Small reduction in KM, small increase in dissociation of G1,6P intermediate.
- R262 (≠ K254) mutation to A: Increases KM 2-fold, decreases kcat 9-fold for G1P. Alters flexibility of the hinge region.
- K285 (= K277) binding alpha-D-glucose 1-phosphate
- H308 (= H300) binding alpha-D-glucose 1-phosphate; binding alpha-D-mannose 1-phosphate
- E325 (= E317) mutation to A: Reduces KM and Vmax approximately 2-fold.
- EMSGH 325:329 (= EMSGH 317:321) binding alpha-D-glucose 1-phosphate; binding alpha-D-mannose 1-phosphate
- H329 (= H321) mutation to A: No phosphoglucomutase activity using G1P as substrate, protein is less easily phosphorylated, no significant change in structure.
- P368 (= P360) mutation to G: Increases KM 2-fold, decreases kcat 6-fold for G1P. Alters flexibility of the hinge region, structure is less compact.
- R421 (= R413) mutation to C: Loss of phosphomannomutase activity, very low phosphoglucomutase activity.
- RASNT 421:425 (= RASNT 413:417) binding alpha-D-glucose 1-phosphate; binding alpha-D-mannose 1-phosphate
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
Q02E40 Phosphomannomutase/phosphoglucomutase; PMM / PGM; EC 5.4.2.2; EC 5.4.2.8 from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
46% identity, 98% coverage: 6:449/452 of query aligns to 14:457/463 of Q02E40
- S108 (= S100) active site, Non-phosphorylated intermediate; modified: Phosphoserine
1pcjX Enzyme-ligand complex of p. Aeruginosa pmm/pgm (see paper)
46% identity, 98% coverage: 6:449/452 of query aligns to 9:452/458 of 1pcjX
- active site: R15 (= R12), S103 (= S100), H104 (= H101), K113 (= K110), D237 (= D234), D239 (= D236), D241 (= D238), R242 (= R239), H324 (= H321), D335 (= D332)
- binding 1-O-phosphono-alpha-D-mannopyranose: Y12 (= Y9), S103 (= S100), T301 (= T298), G302 (= G299), E320 (= E317), S322 (= S319), H324 (= H321), R416 (= R413), S418 (= S415), N419 (= N416), T420 (= T417)
- binding zinc ion: S103 (= S100), D237 (= D234), D239 (= D236), D241 (= D238)
1k2yX Crystal structure of phosphomannomutase/phosphoglucomutase s108a mutant from p. Aeruginosa (see paper)
46% identity, 98% coverage: 6:449/452 of query aligns to 10:453/459 of 1k2yX
4il8A Crystal structure of an h329a mutant of p. Aeruginosa pmm/pgm (see paper)
46% identity, 98% coverage: 6:449/452 of query aligns to 10:453/459 of 4il8A
- active site: R16 (= R12), S104 (= S100), H105 (= H101), K114 (= K110), D238 (= D234), D240 (= D236), D242 (= D238), R243 (= R239), A325 (≠ H321), D336 (= D332)
- binding magnesium ion: S104 (= S100), D238 (= D234), D240 (= D236), D242 (= D238)
3rsmA Crystal structure of s108c mutant of pmm/pgm (see paper)
45% identity, 94% coverage: 27:449/452 of query aligns to 14:430/436 of 3rsmA
- active site: C87 (≠ S100), K91 (= K110), D215 (= D234), D217 (= D236), D219 (= D238), R220 (= R239), H302 (= H321), D313 (= D332)
- binding phosphate ion: C87 (≠ S100), D215 (= D234), D217 (= D236), D219 (= D238), R220 (= R239)
- binding zinc ion: D215 (= D234), D217 (= D236), D219 (= D238)
3uw2A X-ray crystal structure of phosphoglucomutase/phosphomannomutase family protein (bth_i1489)from burkholderia thailandensis (see paper)
46% identity, 99% coverage: 6:451/452 of query aligns to 7:454/458 of 3uw2A
- active site: R13 (= R12), S109 (= S100), H110 (= H101), K119 (= K110), D243 (= D234), D245 (= D236), D247 (= D238), R248 (= R239), H330 (= H321)
- binding zinc ion: D243 (= D234), D245 (= D236), D247 (= D238)
1wqaA Crystal structure of pyrococcus horikoshii phosphomannomutase/phosphoglucomutase complexed with mg2+
34% identity, 96% coverage: 4:439/452 of query aligns to 3:445/455 of 1wqaA
- active site: R11 (= R12), S101 (= S100), H102 (= H101), K111 (= K110), D243 (= D234), D245 (= D236), D247 (= D238), R248 (= R239), G330 (≠ H321), R340 (≠ D332)
- binding magnesium ion: S101 (= S100), D243 (= D234), D245 (= D236), D247 (= D238)
6nqhA Xanthomonas citri dephospho-pgm in complex with xylose-1-phosphate
30% identity, 97% coverage: 5:442/452 of query aligns to 5:448/448 of 6nqhA
- active site: R12 (= R12), S97 (= S100), H98 (= H101), K107 (= K110), D237 (= D234), D239 (= D236), D241 (= D238), R242 (= R239), H324 (= H321)
- binding magnesium ion: D237 (= D234), D239 (= D236), D241 (= D238)
- binding 1-O-phosphono-alpha-D-xylopyranose: R12 (= R12), S97 (= S100), H98 (= H101), K107 (= K110), D239 (= D236), R242 (= R239), R280 (≠ K277), S301 (≠ T298), G302 (= G299), E320 (= E317), S322 (= S319), H324 (= H321), R414 (= R413), S416 (= S415), N417 (= N416), T418 (= T417), R423 (≠ V422)
6np8A Xanthomonas citri phospho-pgm in complex with mannose-6-phosphate (see paper)
30% identity, 97% coverage: 5:442/452 of query aligns to 5:448/448 of 6np8A
- active site: R12 (= R12), S97 (= S100), H98 (= H101), K107 (= K110), D237 (= D234), D239 (= D236), D241 (= D238), R242 (= R239), H324 (= H321)
- binding calcium ion: S97 (= S100), D237 (= D234), D239 (= D236), D241 (= D238)
- binding 6-O-phosphono-alpha-D-mannopyranose: Y9 (= Y9), R280 (≠ K277), G302 (= G299), H303 (= H300), E320 (= E317), S322 (= S319), H324 (= H321), R414 (= R413), S416 (= S415), N417 (= N416), T418 (= T417), R423 (≠ V422)
6nolA Xanthomonas citri dephospho-pgm in complex with mannose-1-phosphate (see paper)
30% identity, 97% coverage: 5:442/452 of query aligns to 5:448/448 of 6nolA
- active site: R12 (= R12), S97 (= S100), H98 (= H101), K107 (= K110), D237 (= D234), D239 (= D236), D241 (= D238), R242 (= R239), H324 (= H321)
- binding 1-O-phosphono-alpha-D-mannopyranose: G302 (= G299), E320 (= E317), S322 (= S319), H324 (= H321), R414 (= R413), S416 (= S415), N417 (= N416), T418 (= T417), R423 (≠ V422)
- binding magnesium ion: S97 (= S100), D237 (= D234), D239 (= D236), D241 (= D238)
6nnpA Xanthomonas citri dephospho-pgm in complex with glucose-6-phosphate (see paper)
30% identity, 97% coverage: 5:442/452 of query aligns to 5:448/448 of 6nnpA
- active site: R12 (= R12), S97 (= S100), H98 (= H101), K107 (= K110), D237 (= D234), D239 (= D236), D241 (= D238), R242 (= R239), H324 (= H321)
- binding 6-O-phosphono-alpha-D-glucopyranose: R280 (≠ K277), G302 (= G299), H303 (= H300), E320 (= E317), H324 (= H321), R414 (= R413), S416 (= S415), N417 (= N416), T418 (= T417), R423 (≠ V422)
- binding magnesium ion: S97 (= S100), D237 (= D234), D239 (= D236), D241 (= D238)
6nn2A Xanthomonas citri pgm apo-phospho (see paper)
30% identity, 97% coverage: 5:442/452 of query aligns to 5:448/448 of 6nn2A
- active site: R12 (= R12), S97 (= S100), H98 (= H101), K107 (= K110), D237 (= D234), D239 (= D236), D241 (= D238), R242 (= R239), H324 (= H321)
- binding calcium ion: S97 (= S100), D237 (= D234), D239 (= D236), D241 (= D238)
6n1eA Crystal structure of x. Citri phosphoglucomutase in complex with 1- methyl-glucose 6-phosphate (see paper)
30% identity, 97% coverage: 5:442/452 of query aligns to 5:448/448 of 6n1eA
Query Sequence
>WP_073040517.1 NCBI__GCF_900129305.1:WP_073040517.1
MDPRTFREYDIRGLVDKEIHDQDVVLLGKAFGTYMADQGKSRIVVGRDCRLSSNKYRDLL
MEGLLSTGMDVVDVGVCPTPLLYFAIRHLDREGGVMITASHNPPEYNGFKICNGYDTISG
AEIQKLKAVMDAGQFAAGSGSVSSYDIVSPYMDYVAGNIRLNRPLRVGVDAGNAVGGPVA
VPLLERLGCTVYPIYCDMDGTFPNHEPDPTVLENLRDLIDLVRREKLDVGVAYDGDCDRL
GVVDHEGNVVYGDKLMIIFAREILSRKPGAVFISEVKCSKTLYDDIEKHGGKAIMWRTGH
SLIKAKMKEVGADLAGEMSGHMFFKDRYFGFDDGIYASCRLLEILANSGKTIPELLEGVP
KTVTTPEIRVDCPDDEKFTVVEKAVAYFKREGYHVIDVDGARIVFPDGWGLVRASNTQPV
LVLRYEAETEERLKEIQDLIEGTIEKIKAGAI
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory