Comparing WP_073946369.1 NCBI__GCF_001906585.1:WP_073946369.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
43% identity, 89% coverage: 23:504/540 of query aligns to 4:478/501 of P04983
3d31A Modbc from methanosarcina acetivorans (see paper)
33% identity, 39% coverage: 37:247/540 of query aligns to 14:215/348 of 3d31A
Sites not aligning to the query:
8k1pB Mycobacterial efflux pump, adp+vanadate bound state
35% identity, 41% coverage: 24:244/540 of query aligns to 4:213/213 of 8k1pB
8k1oB Mycobacterial efflux pump, amppnp bound state
35% identity, 41% coverage: 24:244/540 of query aligns to 6:215/215 of 8k1oB
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
33% identity, 39% coverage: 36:247/540 of query aligns to 18:228/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
33% identity, 39% coverage: 36:247/540 of query aligns to 19:229/344 of 6cvlD
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
33% identity, 39% coverage: 36:247/540 of query aligns to 19:229/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
33% identity, 39% coverage: 36:247/540 of query aligns to 19:229/344 of 3tuiC
Sites not aligning to the query:
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
27% identity, 41% coverage: 23:242/540 of query aligns to 4:232/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
27% identity, 41% coverage: 23:242/540 of query aligns to 4:232/253 of 1g9xB
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
28% identity, 41% coverage: 29:247/540 of query aligns to 7:223/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
31% identity, 39% coverage: 31:242/540 of query aligns to 10:218/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
29% identity, 41% coverage: 31:251/540 of query aligns to 11:230/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
29% identity, 41% coverage: 31:251/540 of query aligns to 11:230/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
29% identity, 41% coverage: 31:251/540 of query aligns to 11:230/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
29% identity, 41% coverage: 31:251/540 of query aligns to 11:230/242 of 2oljA
8wm7D Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with signalling protein pii (see paper)
28% identity, 39% coverage: 39:247/540 of query aligns to 24:225/257 of 8wm7D
Sites not aligning to the query:
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
28% identity, 41% coverage: 23:242/540 of query aligns to 17:230/378 of P69874
Sites not aligning to the query:
5x40A Structure of a cbio dimer bound with amppcp (see paper)
30% identity, 39% coverage: 35:242/540 of query aligns to 17:222/280 of 5x40A
Sites not aligning to the query:
8w9mD Cryo-em structure of the cyanobacterial nitrate transporter nrtbcd in complex with atp (see paper)
28% identity, 39% coverage: 39:247/540 of query aligns to 22:223/256 of 8w9mD
Sites not aligning to the query:
>WP_073946369.1 NCBI__GCF_001906585.1:WP_073946369.1
MAPPEAAVAAPHPDADGAAPPTVLEAVGVGKRFAGVVALDDVSLTLRRGEIHALVGENGA
GKSTLIKVLTGVHRPDTGELRLGGQPVSFARPHEAQQAGVSTIYQEVNLVPMMSVARNIF
LGREPKNRLRLIDFPRMHREAAELLAGFGVTADVRRPLNTLGVGTQQMVALARAVSVRAR
VVVMDEPTSALEPREVETLFRVIEELHSRDIAILYVSHRMDELYRICDRVTVLRDGRLVH
TGPLAELDRMQLVSMMLGREVAEVRRHGVTGFGAEHDAAREPVLTAENLSRRHLLDEVSL
ELRPGEVLGLGGLLGSGRTETAKALVGALPLDSGTVSVAGRPLRRPSPAAAIRAGVSLLS
EDRKAEGIVPGLSVRENIVLAAMPRLSRAGVVSRKQQDRIVEVFMKRLRIKAAGPEQKVE
ELSGGNQQKVLLARWLCLEPKVLLLDEPTRGIDVGAKAEVQALIDELAQEGLAVLLISSD
VEELVEGADRLVVLRGGAVAGELAGDLVSEPELLDMLAAHTPEPAAETPHTAPHTDKEQE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory