Comparing WP_074200832.1 NCBI__GCF_900141795.1:WP_074200832.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
59% identity, 100% coverage: 1:226/227 of query aligns to 1:226/233 of P75957
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
58% identity, 99% coverage: 2:226/227 of query aligns to 1:225/229 of 7v8iD
7mdyC Lolcde nucleotide-bound
59% identity, 98% coverage: 5:226/227 of query aligns to 2:223/226 of 7mdyC
7arlD Lolcde in complex with lipoprotein and adp (see paper)
60% identity, 96% coverage: 5:221/227 of query aligns to 2:218/222 of 7arlD
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
47% identity, 95% coverage: 9:223/227 of query aligns to 7:220/226 of 5xu1B
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
46% identity, 96% coverage: 5:223/227 of query aligns to 3:216/223 of 2pclA
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
43% identity, 96% coverage: 9:227/227 of query aligns to 5:227/232 of 1f3oA
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
44% identity, 96% coverage: 5:223/227 of query aligns to 4:221/650 of 5ws4A
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
43% identity, 96% coverage: 9:227/227 of query aligns to 5:227/230 of 1l2tA
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
44% identity, 96% coverage: 5:223/227 of query aligns to 4:221/648 of P75831
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
39% identity, 97% coverage: 4:223/227 of query aligns to 2:220/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
39% identity, 96% coverage: 5:223/227 of query aligns to 3:220/592 of 5lj7A
8g4cB Bceabs atpgs high res tm (see paper)
34% identity, 98% coverage: 5:226/227 of query aligns to 3:224/248 of 8g4cB
7tchB Bceab e169q variant atp-bound conformation (see paper)
34% identity, 98% coverage: 5:226/227 of query aligns to 2:223/245 of 7tchB
8w6iD Cryo-em structure of escherichia coli str k12 ftsex complex with atp- gamma-s in peptidisc
43% identity, 87% coverage: 25:221/227 of query aligns to 18:213/219 of 8w6iD
Sites not aligning to the query:
P0A9R7 Cell division ATP-binding protein FtsE from Escherichia coli (strain K12) (see paper)
43% identity, 87% coverage: 25:221/227 of query aligns to 18:213/222 of P0A9R7
8hd0A Cell divisome spg hydrolysis machinery ftsex-envc
43% identity, 87% coverage: 25:221/227 of query aligns to 18:213/218 of 8hd0A
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
41% identity, 90% coverage: 24:227/227 of query aligns to 16:217/240 of 4ymuJ
Sites not aligning to the query:
8i6rB Cryo-em structure of pseudomonas aeruginosa ftse(e163q)x/envc complex with atp in peptidisc (see paper)
42% identity, 88% coverage: 25:223/227 of query aligns to 18:215/222 of 8i6rB
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
36% identity, 89% coverage: 10:212/227 of query aligns to 6:207/343 of P30750
Sites not aligning to the query:
>WP_074200832.1 NCBI__GCF_900141795.1:WP_074200832.1
MNNRVLEGRNLVKTYRDGPAETPVLKGVSLILHRRERVAIVGSSGSGKSTLLHLLGGLDR
PTDGEVLLLGQPFSKLGEAARGRLRNRHMGFVYQFHHLLPELTAEENVMMPLLIRRESEA
TARDKALALLDAVGLSRRTAHKPSELSGGERQRVALARALVTEPDCVLADEPTGNLDSRS
AEQVLSLMDDLNQRFGTALLVVTHDVNIAARMDRTLTLRDGMIRVEE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory