SitesBLAST
Comparing WP_075619871.1 NCBI__GCF_001939075.1:WP_075619871.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4cpdA Alcohol dehydrogenase tadh from thermus sp. Atn1
33% identity, 100% coverage: 1:378/379 of query aligns to 1:346/346 of 4cpdA
- active site: C38 (= C38), G39 (= G39), S40 (= S40), H43 (= H43), H59 (= H59), E60 (= E60), C89 (= C89), C92 (= C92), C95 (= C95), C103 (= C103), G107 (= G116), D152 (= D163), T156 (= T167), K340 (≠ S372)
- binding nicotinamide-adenine-dinucleotide: G39 (= G39), S40 (= S40), T156 (= T167), G178 (= G189), P179 (= P190), V180 (= V191), D200 (= D211), R201 (≠ H212), R205 (= R216), A243 (≠ C255), V244 (= V256), V266 (≠ T298), V268 (= V300), L292 (≠ Q324), A293 (= A325), F333 (= F365)
- binding zinc ion: C38 (= C38), H59 (= H59), C89 (= C89), C92 (= C92), C95 (= C95), C103 (= C103), D152 (= D163)
5ylnA Zinc dependent alcohol dehydrogenase 2 from streptococcus pneumonia - apo form
32% identity, 95% coverage: 19:378/379 of query aligns to 22:342/348 of 5ylnA
2dphA Crystal structure of formaldehyde dismutase
32% identity, 100% coverage: 2:379/379 of query aligns to 4:391/398 of 2dphA
- active site: C45 (= C38), G46 (= G39), S47 (= S40), H50 (= H43), H66 (= H59), E67 (= E60), C96 (= C89), C99 (= C92), C102 (= C95), C110 (= C103), L114 (≠ N107), S168 (= S162), D169 (= D163), P172 (= P166), K386 (= K374)
- binding nicotinamide-adenine-dinucleotide: C45 (= C38), G46 (= G39), S47 (= S40), H50 (= H43), F92 (= F85), D169 (= D163), T173 (= T167), A192 (≠ L186), G193 (= G187), G195 (= G189), P196 (= P190), V197 (= V191), G216 (≠ V210), D217 (= D211), Q218 (≠ H212), R222 (= R216), L236 (≠ F231), V262 (= V256), H267 (≠ K261), P298 (≠ T298), G299 (= G299), I300 (≠ V300), A337 (= A325)
- binding zinc ion: C45 (= C38), H66 (= H59), C96 (= C89), C99 (= C92), C102 (= C95), C110 (= C103), D169 (= D163)
Q52078 Formaldehyde dismutase; EC 1.2.98.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
32% identity, 100% coverage: 2:379/379 of query aligns to 5:392/399 of Q52078
- C46 (= C38) binding Zn(2+)
- GSDQH 47:51 (≠ GSDLH 39:43) binding NAD(+)
- H67 (= H59) binding Zn(2+)
- C97 (= C89) binding Zn(2+)
- C100 (= C92) binding Zn(2+)
- C103 (= C95) binding Zn(2+)
- C111 (= C103) binding Zn(2+)
- D170 (= D163) binding Zn(2+)
- T174 (= T167) binding NAD(+)
- PV 197:198 (= PV 190:191) binding NAD(+)
- DQ 218:219 (≠ DH 211:212) binding NAD(+)
- R223 (= R216) binding NAD(+)
- V263 (= V256) binding NAD(+)
- H268 (≠ K261) binding NAD(+)
- P299 (≠ T298) binding NAD(+)
- PGI 299:301 (≠ TGV 298:300) binding NAD(+)
- GMA 336:338 (≠ GQA 323:325) binding NAD(+)
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 2:399 modified: mature protein, Formaldehyde dismutase
4jlwA Crystal structure of formaldehyde dehydrogenase from pseudomonas aeruginosa (see paper)
32% identity, 100% coverage: 2:379/379 of query aligns to 3:390/395 of 4jlwA
- binding nicotinamide-adenine-dinucleotide: C45 (= C38), G46 (= G39), S47 (= S40), H50 (= H43), D168 (= D163), T172 (= T167), G194 (= G189), P195 (= P190), V196 (= V191), D216 (= D211), R221 (= R216), V261 (= V256), R266 (≠ K261), H268 (≠ S263), V281 (vs. gap), P298 (≠ N287), L300 (≠ V289), Q336 (= Q324), T337 (≠ A325)
- binding zinc ion: C45 (= C38), H66 (= H59), C96 (= C89), C99 (= C92), C102 (= C95), C110 (= C103), D168 (= D163)
P46154 Glutathione-independent formaldehyde dehydrogenase; FALDH; FDH; Formaldehyde dismutase; EC 1.2.1.46; EC 1.2.98.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
30% identity, 100% coverage: 2:379/379 of query aligns to 5:392/399 of P46154
- C47 (= C38) binding Zn(2+)
- GSDQH 48:52 (≠ GSDLH 39:43) binding NAD(+)
- H68 (= H59) binding Zn(2+)
- C98 (= C89) binding Zn(2+)
- C101 (= C92) binding Zn(2+)
- C104 (= C95) binding Zn(2+)
- C112 (= C103) binding Zn(2+)
- V198 (= V191) binding NAD(+)
- D218 (= D211) binding NAD(+)
- R223 (= R216) binding NAD(+)
- V263 (= V256) binding NAD(+)
- RGH 268:270 (≠ KLS 261:263) binding NAD(+)
- PGL 300:302 (≠ TGV 298:300) binding NAD(+)
- GQT 337:339 (≠ GQA 323:325) binding NAD(+)
1kolA Crystal structure of formaldehyde dehydrogenase (see paper)
30% identity, 100% coverage: 2:379/379 of query aligns to 3:390/396 of 1kolA
- active site: C45 (= C38), G46 (= G39), S47 (= S40), H50 (= H43), H66 (= H59), E67 (= E60), C96 (= C89), C99 (= C92), C102 (= C95), C110 (= C103), N114 (= N107), D168 (= D163), T172 (= T167), K385 (= K374)
- binding nicotinamide-adenine-dinucleotide: C45 (= C38), G46 (= G39), S47 (= S40), H50 (= H43), F92 (= F85), D168 (= D163), T172 (= T167), G192 (= G187), G194 (= G189), P195 (= P190), V196 (= V191), D216 (= D211), L217 (≠ H212), R221 (= R216), A260 (≠ C255), V261 (= V256), R266 (≠ K261), H268 (≠ S263), V281 (≠ A281), P298 (≠ T298), L300 (≠ V300), Q336 (= Q324), T337 (≠ A325)
- binding zinc ion: C45 (= C38), H66 (= H59), C96 (= C89), C99 (= C92), C102 (= C95), C110 (= C103), D168 (= D163)
1cdoA Alcohol dehydrogenase (E.C.1.1.1.1) (ee isozyme) complexed with nicotinamide adenine dinucleotide (NAD), and zinc (see paper)
28% identity, 95% coverage: 3:361/379 of query aligns to 12:358/374 of 1cdoA
- active site: C46 (= C38), H47 (≠ G39), T48 (≠ S40), Y51 (vs. gap), H68 (= H59), E69 (= E60), C98 (= C89), C101 (= C92), C104 (= C95), C112 (= C103), W116 (vs. gap), C175 (≠ L161), T179 (= T167)
- binding nicotinamide-adenine-dinucleotide: C46 (= C38), H47 (≠ G39), T48 (≠ S40), C175 (≠ L161), T179 (= T167), G202 (= G189), V204 (= V191), D224 (= D211), L225 (≠ H212), V270 (= V256), G271 (= G257), V293 (≠ I284), W295 (≠ L286)
- binding zinc ion: C46 (= C38), H68 (= H59), C98 (= C89), C104 (= C95), C112 (= C103)
Sites not aligning to the query:
P26325 Alcohol dehydrogenase 1; EC 1.1.1.1 from Gadus morhua subsp. callarias (Baltic cod) (Gadus callarias) (see paper)
28% identity, 95% coverage: 3:361/379 of query aligns to 12:358/375 of P26325
Sites not aligning to the query:
- 1 modified: N-acetylalanine
4ejmA Crystal structure of a putative zinc-binding dehydrogenase (target psi-012003) from sinorhizobium meliloti 1021 bound to NADP
27% identity, 94% coverage: 1:358/379 of query aligns to 4:323/342 of 4ejmA
- active site: C40 (= C38), G41 (= G39), T42 (≠ S40), H45 (= H43), H61 (= H59), E62 (= E60), C91 (= C89), C94 (= C92), C97 (= C95), C105 (= C103), R109 (≠ N107), P147 (≠ V164), C151 (≠ A168)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G170 (= G187), G172 (= G189), V173 (≠ P190), I174 (≠ V191), T194 (≠ D211), R195 (≠ H212), Q196 (≠ L213), K199 (≠ R216), C240 (= C255), E245 (= E266), T246 (≠ K267), L263 (≠ T298), V265 (= V300), I291 (≠ Q324)
- binding zinc ion: C91 (= C89), C94 (= C92), C97 (= C95), C105 (= C103)
Sites not aligning to the query:
4ej6A Crystal structure of a putative zinc-binding dehydrogenase (target psi-012003) from sinorhizobium meliloti 1021
27% identity, 94% coverage: 1:358/379 of query aligns to 4:323/343 of 4ej6A
- active site: C40 (= C38), G41 (= G39), T42 (≠ S40), H45 (= H43), H61 (= H59), E62 (= E60), C91 (= C89), C94 (= C92), C97 (= C95), C105 (= C103), R109 (≠ N107), P147 (≠ V164), C151 (≠ A168)
- binding zinc ion: C91 (= C89), C94 (= C92), C97 (= C95), C105 (= C103)
Sites not aligning to the query:
1e3jA Ketose reductase (sorbitol dehydrogenase) from silverleaf whitefly (see paper)
27% identity, 99% coverage: 1:377/379 of query aligns to 3:344/348 of 1e3jA
- active site: C38 (= C38), G39 (= G39), S40 (= S40), H43 (= H43), H63 (= H59), E64 (= E60), C93 (= C89), C96 (= C92), C99 (= C95), C107 (= C103), T111 (≠ N107), P150 (≠ V164), G154 (≠ A168), K341 (= K374)
- binding phosphate ion: A174 (≠ S188), A196 (≠ D211), R197 (≠ H212), S198 (≠ L213), R201 (= R216)
- binding zinc ion: C38 (= C38), H63 (= H59), E64 (= E60), C93 (= C89), C96 (= C92), C99 (= C95), C107 (= C103)
5tnxA Crystal structure of alcohol dehydrogenase zinc-binding domain protein from burkholderia ambifaria
27% identity, 95% coverage: 21:379/379 of query aligns to 25:364/370 of 5tnxA
- active site: C42 (= C38), H43 (≠ G39), T44 (≠ S40), I47 (≠ H43), H63 (= H59), E64 (= E60), C92 (= C89), C95 (= C92), C98 (= C95), C106 (= C103), F110 (vs. gap), C171 (= C151), T175 (≠ D155), K363 (= K378)
- binding zinc ion: C92 (= C89), C95 (= C92), C98 (= C95), C106 (= C103)
B6HI95 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255) (Penicillium chrysogenum) (see paper)
26% identity, 93% coverage: 24:374/379 of query aligns to 40:366/385 of B6HI95
- DI 212:213 (≠ DH 211:212) mutation to SR: Alters cofactor specificity from NAD to NADP; when associated with T-358.
- S358 (≠ H366) mutation to T: Alters cofactor specificity from NAD to NADP; when associated with 212-SR-213.
P12311 Alcohol dehydrogenase; ADH-T; EC 1.1.1.1 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see paper)
30% identity, 77% coverage: 3:295/379 of query aligns to 4:285/337 of P12311
- C38 (= C38) mutation to S: No activity.
- T40 (≠ S40) mutation to A: No activity.; mutation to S: Little decrease in activity.
- H43 (= H43) mutation to A: No activity.; mutation to R: Higher level of activity at pH 9.
3m6iA L-arabinitol 4-dehydrogenase (see paper)
26% identity, 94% coverage: 24:378/379 of query aligns to 35:356/358 of 3m6iA
- active site: C49 (= C38), G50 (= G39), S51 (= S40), H54 (= H43), H74 (= H59), E75 (= E60), C104 (= C89), C107 (= C92), C110 (= C95), C118 (= C103), D122 (≠ N107), P160 (≠ V164), A164 (= A168), K352 (= K374)
- binding nicotinamide-adenine-dinucleotide: C49 (= C38), V163 (≠ T167), G185 (= G189), P186 (= P190), I187 (≠ V191), D207 (= D211), R212 (= R216), C255 (= C255), T256 (≠ V256), I278 (= I282), G279 (≠ D283), V280 (≠ I284), R304 (≠ P326)
- binding zinc ion: C49 (= C38), H74 (= H59), C104 (= C89), C107 (= C92), C110 (= C95), C118 (= C103)
Q7SI09 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (see 2 papers)
26% identity, 94% coverage: 24:378/379 of query aligns to 39:360/363 of Q7SI09
- C53 (= C38) binding Zn(2+)
- F59 (≠ I44) mutation F->A,S,Y: No effect.
- H78 (= H59) binding Zn(2+)
- E79 (= E60) binding Zn(2+)
- C108 (= C89) binding Zn(2+)
- C111 (= C92) binding Zn(2+)
- C114 (= C95) binding Zn(2+)
- C122 (= C103) binding Zn(2+)
- E163 (≠ D163) binding Zn(2+)
- PI 190:191 (≠ PV 190:191) binding NAD(+)
- D211 (= D211) binding NAD(+)
- DI 211:212 (≠ DH 211:212) mutation to SR: Alters cofactor specificity from NAD to NADP; when associated with T-348.
- R216 (= R216) binding NAD(+)
- I282 (= I282) binding NAD(+)
- QYR 306:308 (≠ QAP 324:326) binding NAD(+)
- S348 (≠ H366) mutation to T: Alters cofactor specificity from NAD to NADP; when associated with 211-SR-212.
A2QAC0 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) (see 2 papers)
25% identity, 95% coverage: 14:374/379 of query aligns to 31:367/386 of A2QAC0
- M70 (≠ L49) mutation to F: Abolishes enzyme activity.
- DI 213:214 (≠ DH 211:212) mutation to SR: Alters cofactor specificity from NAD to NADP; when associated with T-359.
- Y318 (≠ A325) mutation to F: Increases affinity for D-sorbitol.
- A359 (≠ H366) mutation to T: Alters cofactor specificity from NAD to NADP; when associated with 213-SR-214.
P25406 Alcohol dehydrogenase 1B; Alcohol dehydrogenase I-B; ADH IB; EC 1.1.1.1 from Saara hardwickii (Indian spiny-tailed lizard) (Uromastyx hardwickii) (see paper)
28% identity, 89% coverage: 3:341/379 of query aligns to 12:359/375 of P25406
Sites not aligning to the query:
- 1 modified: N-acetylserine
1rjwA Crystal structure of NAD(+)-dependent alcohol dehydrogenase from bacillus stearothermophilus strain lld-r (see paper)
34% identity, 56% coverage: 1:211/379 of query aligns to 1:195/339 of 1rjwA
- active site: C38 (= C38), H39 (≠ G39), T40 (≠ S40), H43 (= H43), H61 (= H59), E62 (= E60), C92 (= C89), C95 (= C92), C98 (= C95), C106 (= C103), K110 (vs. gap), C148 (≠ L161), T152 (= T167)
- binding trifluoroethanol: T40 (≠ S40), C148 (≠ L161)
- binding zinc ion: C38 (= C38), H61 (= H59), C92 (= C89), C95 (= C92), C98 (= C95), C106 (= C103)
Sites not aligning to the query:
Query Sequence
>WP_075619871.1 NCBI__GCF_001939075.1:WP_075619871.1
MKAVTFQGAKDVKVKEVPDAKLEKKDDIIVRITSTAICGSDLHIYRGALPAKKDYVIGHE
PMGIVEEVGPEVTKVKKGDRVVLPFNVSCGDCYYCNHDLESQCDNSNDNPTVDTGGYFGF
TERYGNYAGGQAEFLRVPYGNFMPFVIPPSCELEDESLLFLSDVLPTAYWSVESSGMKAG
DTVAVLGSGPVGLMAQKFAWMKGAKRVIAVDHLPYRLKHAIKMNNVEAFNFDEYDDMGAH
IKEITNGGVDVVIDCVGMDGKLSAIEKVEQKLKLQGGTLSAIDIGLNSVRKFGTIQLTGV
YGSLYNMFPLGNIFERNVTLKMGQAPVIHYMPLLFDKITKGEFDPTEIITHKVPLDQASK
AYQTFHDHEDESIKFILKP
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory